Literature DB >> 23977832

Two-dimensional fluorescence lifetime correlation spectroscopy. 1. Principle.

Kunihiko Ishii1, Tahei Tahara.   

Abstract

Fluorescence correlation spectroscopy (FCS) is a unique tool for investigating microsecond molecular dynamics of complex molecules in equilibrium. However, application of FCS in the study of molecular dynamics has been limited, owing to the complexity in the extraction of physically meaningful information. In this work, we develop a new method that combines FCS and time-correlated single photon counting (TCPSC) to extract unambiguous information about equilibrium dynamics of complex molecular systems. In this method, which we name two-dimensional fluorescence lifetime correlation spectroscopy (2D FLCS), we analyze the correlation of the fluorescence photon pairs, referring to the fluorescence lifetime. We first obtain the correlations of the photon pairs with respect to the excitation-emission delay times in the form of a two-dimensional (2D) map. Then, the 2D map is converted to the correlations between different species that have distinct fluorescence lifetimes using inverse Laplace transformation. This 2D FLCS is capable of visualizing the equilibration dynamics of complex molecules with microsecond time resolution at the single-molecule level. We performed a kinetic Monte Carlo simulation of a TCPSC-FCS experiment as a proof-of-principle example. The result clearly shows the validity of the proposed method and its high potential in analyzing the photon data of dynamic systems.

Year:  2013        PMID: 23977832     DOI: 10.1021/jp406861u

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  11 in total

1.  Single-molecule FRET methods to study the dynamics of proteins at work.

Authors:  Hisham Mazal; Gilad Haran
Journal:  Curr Opin Biomed Eng       Date:  2019-08-23

2.  Microsecond and millisecond dynamics in the photosynthetic protein LHCSR1 observed by single-molecule correlation spectroscopy.

Authors:  Toru Kondo; Jesse B Gordon; Alberta Pinnola; Luca Dall'Osto; Roberto Bassi; Gabriela S Schlau-Cohen
Journal:  Proc Natl Acad Sci U S A       Date:  2019-05-17       Impact factor: 11.205

3.  Nanosecond-Timescale Dynamics and Conformational Heterogeneity in Human GCK Regulation and Disease.

Authors:  Shawn M Sternisha; A Carl Whittington; Juliana A Martinez Fiesco; Carol Porter; Malcolm M McCray; Timothy Logan; Cristina Olivieri; Gianluigi Veglia; Peter J Steinbach; Brian G Miller
Journal:  Biophys J       Date:  2020-01-14       Impact factor: 4.033

4.  Fast and robust two-dimensional inverse Laplace transformation of single-molecule fluorescence lifetime data.

Authors:  Saurabh Talele; John T King
Journal:  Biophys J       Date:  2021-08-28       Impact factor: 3.699

5.  Identification of distinct pH- and zeaxanthin-dependent quenching in LHCSR3 from Chlamydomonas reinhardtii.

Authors:  Julianne M Troiano; Federico Perozeni; Raymundo Moya; Luca Zuliani; Kwangyrul Baek; EonSeon Jin; Stefano Cazzaniga; Matteo Ballottari; Gabriela S Schlau-Cohen
Journal:  Elife       Date:  2021-01-15       Impact factor: 8.140

6.  Microsecond protein dynamics observed at the single-molecule level.

Authors:  Takuhiro Otosu; Kunihiko Ishii; Tahei Tahara
Journal:  Nat Commun       Date:  2015-07-07       Impact factor: 14.919

Review 7.  Two-Dimensional Fluorescence Lifetime Correlation Spectroscopy: Concepts and Applications.

Authors:  Takuhiro Otosu; Shoichi Yamaguchi
Journal:  Molecules       Date:  2018-11-14       Impact factor: 4.411

8.  Chaperones Skp and SurA dynamically expand unfolded OmpX and synergistically disassemble oligomeric aggregates.

Authors:  Neharika Chamachi; Andreas Hartmann; Mai Quynh Ma; Anna Svirina; Georg Krainer; Michael Schlierf
Journal:  Proc Natl Acad Sci U S A       Date:  2022-03-01       Impact factor: 11.205

9.  Membrane-dependent heterogeneity of LHCII characterized using single-molecule spectroscopy.

Authors:  Premashis Manna; Thomas Davies; Madeline Hoffmann; Matthew P Johnson; Gabriela S Schlau-Cohen
Journal:  Biophys J       Date:  2021-06-30       Impact factor: 3.699

10.  Resolving fluorescent species by their brightness and diffusion using correlated photon-counting histograms.

Authors:  Nathan Scales; Peter S Swain
Journal:  PLoS One       Date:  2019-12-30       Impact factor: 3.240

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