| Literature DB >> 32008082 |
Jens Rose Fogh1,2, Anne-Marie Jacobsen2, Tam T T N Nguyen1, Kasper D Rand1, Line Rørbæk Olsen3.
Abstract
As quantitative analysis of biotherapeutics in cerebrospinal fluid (CSF) with LC-MS becomes increasingly widespread, there is a need for method developments towards higher sensitivity. By using artificial CSF (aCSF) in the development phase, the consumption of costly and sparsely available CSF can be limited. The aCSF compositions tested here were made from various dilutions of bovine serum albumin (BSA) or rat plasma to mimic the total protein concentration found in CSF. Focusing on monoclonal antibodies, the aCSF was spiked with human immunoglobulin (hIgG) and prepared with the bottom-up analysis technique using LC-MS. Assuming that the composition of the aCSF would affect the digest, the response from aCSF matrices was compared with CSF from rat, monkey, and dog in terms of estimated sample concentration and matrix effects. The samples were spiked with hIgG in the range of 10 to 1000 ng/mL and volumes of 10 μL were transferred to sample preparation. The results indicate that BSA dilutions from 300 to 2000 μg/mL and rat plasma dilutions of 0.5-2% provide the most accurate concentration estimates when compared with rat CSF. 1000 μg/mL BSA did not produce significantly different concentration estimates for 500 ng/mL samples when compared with CSF from rat, monkey, and dog, and can therefore be used as aCSF for several different species.Entities:
Keywords: Bioanalysis; Cerebrospinal fluid (CSF); Liquid chromatography-mass spectrometry (LC-MS); Monoclonal antibodies (mAbs); Surrogate matrix
Mesh:
Substances:
Year: 2020 PMID: 32008082 PMCID: PMC7026242 DOI: 10.1007/s00216-020-02403-3
Source DB: PubMed Journal: Anal Bioanal Chem ISSN: 1618-2642 Impact factor: 4.142
Typical composition of human plasma and CSF [26, 29–31]
| CSF | Plasma | |
|---|---|---|
Proteins (μg/mL) -Albumin -Globulins -Transferrin -Fibrinogen | 300–700 192 50 14 0.6 | 60,000–70,000 42,150 22,700 2600 2800 |
| Lipids (μg/mL) | 10–20 | 50,000 |
| Na+ (mmol/L) | 140–145 | 135–147 |
| Cl− (mmol/L) | 115–120 | 95–105 |
| Glucose (μg/mL) | 600 | 900 |
| pH | 7.31 | 7.41 |
A list of surrogate matrices used in other studies. Perfusion fluid is a term used for describing commercially available substitutes for CSF with similar ionic composition and no protein content
| Author or publication | aCSF type | Application |
|---|---|---|
| Lame et al. [ | 5% rat plasma in perfusion fluid | Amyloid peptide quantitation |
| Dillen et al. [ | 0.15% bovine serum albumin in perfusion fluid | Amyloid peptide quantitation |
| Hooshfar et al. [ | 0.5–17% rat plasma and perfusion fluid | Small-molecule drug quantitation |
| Barthélemy et al. [ | 0.5% rat serum | Tau protein quantitation |
| Oe et al. [ | 0.15% human serum albumin in perfusion fluid | Amyloid peptide quantitation |
| Oeckl et al. [ | 340–1000 μg/mL human serum albumin in perfusion fluid | Quantitation of synuclein species |
| Goda et al. [ | Perfusion liquid [ | Small-molecule drug quantitation |
Sample preparation as modified from the protocol found in the ProteinWorks kit
| Step | Experimental | Purpose |
|---|---|---|
| Preparation | 40 μL digestion buffer with 300 ng/mL SILu™Mab ISTD and 20 μg/mL BSA is added to each tube followed by 10 μL sample | Addition of internal standard and reduction of non-specific binding |
| Denaturation | Sample and internal standard is denatured for 10 min at 80 °C. | Unfolding of the protein |
| Reduction | Addition of 10 μL reduction agent and heating for 20 min at 60 °C | Reduction of the cysteine bonds to make the protein accessible to digestion |
| Alkylation | Addition of 15 μL alkylation agent and covered from light for 30 min at room temperature | Alkylation of the thiol groups to prevent cysteine bonds from reforming |
| Digestion | Addition of 15 μL trypsin and heating for 2 h at 45 °C | Cleavage of the protein to generate signature peptides |
| Quench | Addition of 5 μL digestion inactivation agent and heating for 15 min at 45 °C followed by 20 min centrifugation at 1800 RCF at 4 °C | Decreasing the pH to quench the enzymatic activity of trypsin |
Time points and compositions for the UPLC gradient used for all experiments. 0.1% formic acid was added to both mobile phases
| Time (min) | A (H2O) (%) | B (ACN) (%) |
|---|---|---|
| 0 | 98 | 2 |
| 2 | 98 | 2 |
| 8 | 70 | 30 |
| 8.5 | 10 | 90 |
| 9.5 | 10 | 90 |
| 10 | 98 | 2 |
| 12 | 98 | 2 |
Signature peptides with their respective settings as used in SRM for the quantitation of hIgG. Position is referring to the SILu™Lite hIgG sequence at the constant region of the heavy chain (HC). The ISTD equivalents can be found in the ESM
| Peptide | Amino acid position | Precursor ( | Fragments ( | Dwell time (ms) | Collision energy (eV) | Cone voltage (V) |
|---|---|---|---|---|---|---|
| ALPAPIEK | 331–338 HC | 419.76 | 654.38 486.29 | 59 59 | 11 20 | 20 20 |
| DTLMISR | 253–259 HC | 418.22 | 506.28 | 59 | 17 | 20 |
| GPSVFPLAPSSK | 126–137 HC | 593.83 | 699.40 | 80 | 21 | 40 |
| VVSVLTVLHQDWLNGK | 306–321 HC | 603.34 | 805.44 | 68 | 20 | 20 |
| TTPPVLDSDGSFFLYSK* | 397–413 HC | 937.46 | 836.42 | 16 | 20 | 20 |
*Only used when comparing different species because of low interference from endogenous peptides
Key data for the calibration curves generated and used to estimate sample concentrations. SIL versions of the same peptides were used as internal standard for all experiments
| Peptide | Fragment ( | Calibration curve range (ng/mL) | Weighting | Linear fit ( | Slope |
|---|---|---|---|---|---|
| ALPAPIEK | 654.38 486.29 | 1–1000 1–1000 | 1/ 1/ | 0.9996 0.9999 | 0.00152 0.00148 |
| DTLMISR | 506.28 | 10–1000 | 1/ | 0.9992 | 0.00204 |
| GPSVFPLAPSSK | 699.40 | 50–1000 | 1/ | 0.9974 | 0.00144 |
| VVSVLTVLHQDWLNGK | 805.45 | 50–1000 | 1/ | 0.9997 | 0.00153 |
| TTPPVLDSDGSFFLYSK | 836.42 | 10–1000 | 1/ | 0.9990 | 0.00128 |
Fig. 1Comparison of the response from internal standard in 6 different matrices. The mean response from at least 4 replicates of 5 different fragments is normalized to the results from internal standard in rat CSF. Mean values significantly different from those obtained in the CSF matrix are marked with one asterisk for p < 0.01 and three asterisks for p < 0.0001
Various aCSF compositions spiked with hIgG (n = 4) to determine the effect on the response. The estimation is performed using a calibration curve in 1000 μg/mL BSA. Concentrations estimates of hIgG are based on the ALPAPIEK 419–654 peptide fragment with 20 μL injections. The total protein amount is derived from theoretical values
| Matrix | Total protein in matrix (pr. 10 μL) | QC conc (ng/mL) | Mean cal. conc (ng/mL) | % CV | Mean accuracy (%) |
|---|---|---|---|---|---|
| Rat CSF | 3–7 μg | 10 50 100 500 1000 | 10.0 56.5 127.2 493.9 1103.0 | 9.0 4.6 6.6 4.3 2.6 | 100 113 127 98 110 |
| 20 μg/mL BSA | 0.2 μg | 10 100 1000 | 7.0 73.4 786.6 | 8.6 5.1 8.3 | 70 73 79 |
| 300 μg/mL BSA | 3 μg | 10 100 1000 | 8.2 82.0 865.2 | 9.0 1.7 5.9 | 82 82 87 |
| 600 μg/mL BSA | 6 μg | 10 100 1000 | 10.5 96.5 945.7 | 12.6 4.8 8.5 | 105 96 95 |
| 1000 μg/mL BSA | 10 μg | 10 100 1000 | 8.6 94.1 957.6 | 9.5 3.4 5.0 | 86 94 96% |
| 1400 μg/mL BSA | 14 μg | 10 100 1000 | 9.3 83.6 996.8 | 8.1 2.4 8.8 | 93 84 100 |
| 2000 μg/mL BSA | 20 μg | 10 100 1000 | 9.4 98.8 1036.4 | 15.1 3.8 6.1 | 94 99 104 |
| 10000 μg/mL BSA | 100 μg | 10 100 1000 | 9.8 88.3 1057.6 | 14.80 5.32 3.30 | 98 88 106 |
| 0.5% rat plasma | 3 μg | 10 100 1000 | 8.2 86.5 979.3 | 8.8 11.8 5.3 | 82 87 98 |
| 2% rat plasma | 12 μg | 10 100 1000 | 12.7 102.8 1096.8 | 6.3 4.4 5.4 | 127 103 110 |
Fig. 2Mean and standard deviation for hIgG spiked in 500 ng/mL and 1000 ng/mL in aCSF (1000 μg/mL BSA) and CSF from three species: rat, dog (beagle), and cynomolgus monkey (Cyno) (n = 4). The estimated concentrations were based on fragments of the GPSVFPLAPSSK and TTPPVLDSDGSFFLYSK peptides in a 1000 μg/mL BSA matrix calibration curve. Dotted lines mark the mean and ± 20% variation for the aCSF estimates