Literature DB >> 31980854

An RNA Ring was Not the Progenitor of the tRNA Molecule.

Massimo Di Giulio1,2.   

Abstract

I analyzed the model that suggests that an RNA ring might have been the progenitor of the tRNA molecule (Demongeot and Moreira in J Theor Biol 249:314-324, 2007; Demongeot and Seligmann in J Mol Evol 1-23, 2019a; Demongeot and Norris in Life 9(2):51, 2019). In particular, I analyze three ways in which this precursor, especially in its RNA hairpin form, could have evolved into the complete tRNA molecule. These three modalities are based on multiple duplication events, and therefore, appear to be less parsimonious than that which assumes that this molecule originated through one duplication of a single hairpin structure. The conclusion is, therefore, that the latter model appears to be preferable with respect to that of the RNA ring, also because there are many independent observations and some of a historical nature that would corroborate it in an extraordinary way.

Entities:  

Keywords:  Evolution by gene duplication; RNA hairpin; RNA ring; tRNA origin

Mesh:

Substances:

Year:  2020        PMID: 31980854     DOI: 10.1007/s00239-020-09927-3

Source DB:  PubMed          Journal:  J Mol Evol        ISSN: 0022-2844            Impact factor:   2.395


  29 in total

1.  The non-monophyletic origin of the tRNA molecule.

Authors:  M Di Giulio
Journal:  J Theor Biol       Date:  1999-04-07       Impact factor: 2.691

2.  The origin of the tRNA molecule: implications for the origin of protein synthesis.

Authors:  Massimo Di Giulio
Journal:  J Theor Biol       Date:  2004-01-07       Impact factor: 2.691

Review 3.  The origin of the tRNA molecule: Independent data favor a specific model of its evolution.

Authors:  Massimo Di Giulio
Journal:  Biochimie       Date:  2012-01-28       Impact factor: 4.079

4.  The origin of the 5S ribosomal RNA molecule could have been caused by a single inverse duplication: strong evidence from its sequences.

Authors:  Sergio Branciamore; Massimo Di Giulio
Journal:  J Mol Evol       Date:  2012-04-11       Impact factor: 2.395

5.  The non-monophyletic origin of the tRNA molecule and the origin of genes only after the evolutionary stage of the last universal common ancestor (LUCA).

Authors:  Massimo Di Giulio
Journal:  J Theor Biol       Date:  2005-11-11       Impact factor: 2.691

6.  Statistical evidence for remnants of the primordial code in the acceptor stem of prokaryotic transfer RNA.

Authors:  W Möller; G M Janssen
Journal:  J Mol Evol       Date:  1992-06       Impact factor: 2.395

7.  On the origin of the transfer RNA molecule.

Authors:  M Di Giulio
Journal:  J Theor Biol       Date:  1992-11-21       Impact factor: 2.691

8.  Origin of the genetic code: a testable hypothesis based on tRNA structure, sequence, and kinetic proofreading.

Authors:  J J Hopfield
Journal:  Proc Natl Acad Sci U S A       Date:  1978-09       Impact factor: 11.205

9.  Nanoarchaeum equitans creates functional tRNAs from separate genes for their 5'- and 3'-halves.

Authors:  Lennart Randau; Richard Münch; Michael J Hohn; Dieter Jahn; Dieter Söll
Journal:  Nature       Date:  2005-02-03       Impact factor: 49.962

Review 10.  An integrated, structure- and energy-based view of the genetic code.

Authors:  Henri Grosjean; Eric Westhof
Journal:  Nucleic Acids Res       Date:  2016-07-22       Impact factor: 16.971

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