Literature DB >> 14637058

The origin of the tRNA molecule: implications for the origin of protein synthesis.

Massimo Di Giulio1.   

Abstract

A model for tRNA molecule origin is discussed. The model postulates that this molecule originated simply by direct duplication (and subsequent evolution) of a gene coding for an RNA hairpin structure, which can thus be hypothesized as the evolutionary precursor of the tRNA molecule. The main properties are defined for these hairpin structures and it is suggested that these structures might have housed, near their 3' end, anticodons that were transferred to the loop of the tRNA anticodon during duplication of the hairpin structures. Moreover, the main characteristics are given for the evolutionary intermediary formed by direct duplication of the hairpin structure, i.e. the double hairpin. The evolutionary stages envisaged by this model for tRNA origin seem to naturally imply some evolutionary transitions through which the origin of protein synthesis passed. Finally, some strong historical evidence is provided to corroborate the model.

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Year:  2004        PMID: 14637058     DOI: 10.1016/j.jtbi.2003.07.001

Source DB:  PubMed          Journal:  J Theor Biol        ISSN: 0022-5193            Impact factor:   2.691


  35 in total

1.  The origin of the 5S ribosomal RNA molecule could have been caused by a single inverse duplication: strong evidence from its sequences.

Authors:  Sergio Branciamore; Massimo Di Giulio
Journal:  J Mol Evol       Date:  2012-04-11       Impact factor: 2.395

2.  The transition from noncoded to coded protein synthesis: did coding mRNAs arise from stability-enhancing binding partners to tRNA?

Authors:  Harold Stephen Bernhardt; Warren Perry Tate
Journal:  Biol Direct       Date:  2010-04-09       Impact factor: 4.540

3.  Stable tRNA-based phylogenies using only 76 nucleotides.

Authors:  Jeremy Widmann; J Kirk Harris; Catherine Lozupone; Alexey Wolfson; Rob Knight
Journal:  RNA       Date:  2010-06-17       Impact factor: 4.942

4.  The last universal common ancestor (LUCA) and the ancestors of archaea and bacteria were progenotes.

Authors:  Massimo Di Giulio
Journal:  J Mol Evol       Date:  2010-11-16       Impact factor: 2.395

5.  tRNA acceptor-stem and anticodon bases embed separate features of amino acid chemistry.

Authors:  Charles W Carter; Richard Wolfenden
Journal:  RNA Biol       Date:  2015-11-23       Impact factor: 4.652

6.  Self-association of adenine-dependent hairpin ribozymes.

Authors:  Yan-Li Li; Marie-Christine Maurel; Christine Ebel; Jacques Vergne; Vitaliy Pipich; Giuseppe Zaccai
Journal:  Eur Biophys J       Date:  2007-09-25       Impact factor: 1.733

7.  Evolutionary patterns of non-coding RNAs.

Authors:  Athanasius F Bompfünewerer; Christoph Flamm; Claudia Fried; Guido Fritzsch; Ivo L Hofacker; Jörg Lehmann; Kristin Missal; Axel Mosig; Bettina Müller; Sonja J Prohaska; Bärbel M R Stadler; Peter F Stadler; Andrea Tanzer; Stefan Washietl; Christina Witwer
Journal:  Theory Biosci       Date:  2005-04       Impact factor: 1.919

8.  A comparison among the models proposed to explain the origin of the tRNA molecule: A synthesis.

Authors:  Massimo Di Giulio
Journal:  J Mol Evol       Date:  2009-06-02       Impact factor: 2.395

Review 9.  The protein invasion: a broad review on the origin of the translational system.

Authors:  David W Morgens
Journal:  J Mol Evol       Date:  2013-10-22       Impact factor: 2.395

10.  Formal proof that the split genes of tRNAs of Nanoarchaeum equitans are an ancestral character.

Authors:  Massimo Di Giulio
Journal:  J Mol Evol       Date:  2009-09-17       Impact factor: 2.395

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