Andrew P Wescott1,2, Joseph P Y Kao1,2, W Jonathan Lederer1,2, Liron Boyman3,4. 1. Center for Biomedical Engineering and Technology, University of Maryland School of Medicine, Baltimore, MD, USA. 2. Department of Physiology, University of Maryland School of Medicine, Baltimore, MD, USA. 3. Center for Biomedical Engineering and Technology, University of Maryland School of Medicine, Baltimore, MD, USA. lboyman@som.umaryland.edu. 4. Department of Physiology, University of Maryland School of Medicine, Baltimore, MD, USA. lboyman@som.umaryland.edu.
Abstract
Regulation of ATP production by mitochondria, critical to multicellular life, is poorly understood. Here we investigate the molecular controls of this process in heart and provide a framework for its Ca2+-dependent regulation. We find that the entry of Ca2+ into the matrix through the mitochondrial calcium uniporter (MCU) in heart has neither an apparent cytosolic Ca2+ threshold nor gating function and guides ATP production by its influence on the inner mitochondrial membrane (IMM) potential, ΔΨm. This regulation occurs by matrix Ca2+-dependent modulation of pyruvate and glutamate dehydrogenase activity and not through any effect of Ca2+ on ATP Synthase or on Electron Transport Chain Complexes II, III or IV. Examining the ΔΨm dependence of ATP production over the range of -60 mV to -170 mV in detail reveals that cardiac ATP synthase has a voltage dependence that distinguishes it fundamentally from the previous standard, the bacterial ATP synthase. Cardiac ATP synthase operates with a different ΔΨm threshold for ATP production than bacterial ATP synthase and reveals a concave-upwards shape without saturation. Skeletal muscle MCU Ca2+ flux, while also having no apparent cytosolic Ca2+ threshold, is substantially different from the cardiac MCU, yet the ATP synthase voltage dependence in skeletal muscle is identical to that in the heart. These results suggest that while the conduction of cytosolic Ca2+ signals through the MCU appears to be tissue-dependent, as shown by earlier work1, the control of ATP synthase by ΔΨm appears to be broadly consistent among tissues but is clearly different from bacteria.
Regulation of ATP production by mitochondria, critical to multicellular life, is poorly understood. Here we investigate the molecular controls of this process in heart and provide a framework for its Ca2+-dependent regulation. We find that the entry of Ca2+ into the matrix through the mitochondrial calcium uniporter (MCU) in heart has neither an apparent cytosolic Ca2+ threshold nor gating function and guides ATP production by its influence on the inner mitochondrial membrane (IMM) potential, ΔΨm. This regulation occurs by matrix Ca2+-dependent modulation of pyruvate and glutamate dehydrogenase activity and not through any effect of Ca2+ on ATP Synthase or on Electron Transport Chain Complexes II, III or IV. Examining the ΔΨm dependence of ATP production over the range of -60 mV to -170 mV in detail reveals that cardiac ATP synthase has a voltage dependence that distinguishes it fundamentally from the previous standard, the bacterial ATP synthase. Cardiac ATP synthase operates with a different ΔΨm threshold for ATP production than bacterial ATP synthase and reveals a concave-upwards shape without saturation. Skeletal muscle MCUCa2+ flux, while also having no apparent cytosolic Ca2+ threshold, is substantially different from the cardiac MCU, yet the ATP synthase voltage dependence in skeletal muscle is identical to that in the heart. These results suggest that while the conduction of cytosolic Ca2+ signals through the MCU appears to be tissue-dependent, as shown by earlier work1, the control of ATP synthase by ΔΨm appears to be broadly consistent among tissues but is clearly different from bacteria.
ATP consumption in heart is the highest of any tissue and, even with the
phosphocreatine regenerating system, the ATP reserve is minimal ― lasting less
than 1 minute if ATP production were to be stopped instantaneously[2,3]. It is
thus not surprising that mitochondria, the primary source of ATP production, play an
important role in cardiovascular physiology and pathophysiology[4]. Mitochondria are similarly important in other
high-energy-consuming tissues such as brain, kidney, liver and skeletal muscle[5,6].
Despite the critical importance of mitochondria in producing ATP, there is little
time-resolved quantitative data on how mitochondria work[7,8]. Here we
provide quantitative information on how cardiac mitochondria generate ATP, how ATP
production is powered by ΔΨm, and how
ΔΨm is regulated by Ca2+ concentration in the
mitochondrial matrix ([Ca2+]m).Fig. 1a–b show surface plots of ATP production measured as functions of
[Ca2+]m and the added concentrations of ADP ([ADP]).
Fluorescence [Ca2+]m and luminescence ATP measurements were
performed together from isolated heart mitochondria and quantitatively calibrated in
each test condition (Extended Data Figs.
1–3). These data show that
elevated [ADP] and [Ca2+]m robustly stimulate ATP production
(Fig. 1a–e), with a half-activation concentration of ~20 μM for [ADP]
(Fig. 1g) and ~600 nM for
[Ca2+]m (Fig.1d–f). ADP and
[Ca2+]m work by different mechanisms. Elevated [ADP] increases
the ADP flux into the mitochondrial matrix, mediated by the adenine nucleotide
translocase (ANT), thus increasing substrate availability for the ATP synthase to
augment ATP production[9,10] (also see Supplemental Discussion 2.1). On the other
hand, increasing the steady-state availability of inorganic phosphate (Pi)
from 1 mM (physiological) to 10 mM (super-physiological) diminished ATP production
(Fig. 1b, 1f and 1g). Fig. 1c shows the absolute value of the difference. These
results are the first determination of the dependence of ATP production on the three key
variables, [Ca2+]m, [ADP] and [Pi], and provide an
important context for additional physiologic investigations.
Figure 1.
[Ca2+]m sensitive ATP production by
mitochondria.
a. The dependence of ATP production (μM/s) on
[Ca2+]m and [ADP]added at 1 mM Pi
(n= 37, 38, 38, 29 for 500, 250, 100, 50 μM ADP
added, respectively). b. Same as (a) but at 10 mM Pi
(n= 28, 27, 30, 42 for 500, 250, 100, 50 μM ADP
added, respectively). c. The difference in ATP production rates
between 1 mM Pi and 10 mM Pi. d. Dependence of ATP production
(μM/s) on ADP at 1 mM Pi when [Ca2+]m is <
200 nM (black circles, n= 3, 3, 3, 5 for 50, 100, 250, 500 μM ADP added,
respectively) or > 2 μM (blue circles, n= 8, 7, 6, 9 for 50, 100,
250, 500 μM ADP added, respectively). Data are fit to a
Michaelis–Menten equation. e. Same as (d) but
at 10 mM Pi when [Ca2+]m is <200 nM (grey circles,
n= 8, 6, 3, 7 for 50, 100, 250, 500 μM ADP added, respectively) or 2
μM (light blue circles, n= 5, 7, 5, 5 for 50, 100, 250, 500 μM ADP
added, respectively). Data are fit to Michaelis–Menten equation.
f. [Ca2+]m at which ATP production rate
is half maximal (K0.5,[Ca]m) for
[ADP]added at both 1 and 10 mM Pi. Each bar shows the
K0.5,[Ca]m constant of each of the eight fit
lines shown as surface plots in a-b
(K0.5,[Ca]m ± s.e. of fit in μM,
fitted sample size is given in a-b, individual data points shown in
a-b). g. [ADP]added at which ATP
production is half maximal (K0.5,ADP) for
[Ca2+]m <100 nM (−) and >2
μM (+) at both 1 and 10 mM Pi. Each bar shows the
K0.5,ADP constant of each of the four fit lines
shown in d-e (K0.5,[Ca]m
± s.e. of fit in μM, fitted sample size is given in
d-e, individual data points shown in a-b).
h-l. ATP production rate at low [Ca2+]m
(<200 nm, black bar) and high [Ca2+]m (>2
μM, blue bar) using the indicated combination of carbon substrates and
metabolic inhibitors (n= 10–20 per group). Abbreviations used in the
diagram: PDH, pyruvate dehydrogenase; TCA, tricarboxylic acid; CI, Complex 1;
CII, Complex 2; CIII, Complex 3; CIV, Complex 4; CV, Complex 5 (i.e. ATP
synthase); Q, ubiquinone; C, cytochrome c. m. 3D reconstruction of
confocal Z-stack images of a cardiomyocyte loaded with the fluorescent indicator
TMRM (tetramethylrhodamine methyl ester perchlorate, 50 nM). n. The
fluorescence of fluorescein-containing poly(vinyl alcohol) (PVA) hydrogel that
embeds the cell shown in (m). o. Diagram showing
boronic acid crosslinker linking cell-surface sugars to the PVA hydrogel.
p. Fluorescence surface plot demonstrating spatiotemporal
changes of ΔΨm. Measurements are done on cardiomyocyte
paced by field-stimulation to contract at 1 or 8 Hz in a bath (extracellular)
solution that contains top; pyruvate (1 mM) and malate (0.5 mM), or bottom;
diAM-succinate (succinic acid diacetoxymethyl ester, 10 μM) and rotenone
(5 μM). q. Average ΔΨm fluorescence
time course using pyruvate + malate (black, n = 13 cells) and diAM-succinate +
rotenone (turquoise, n = 12 cells). r. Quantification of
ΔΨm depolarization expressed as percent change per
minute. s. Sarcomere length measured simultaneously in the
experiments shown in q. The sample size (n) in all panels represents the number
of independent experiments. Data in d-e, h-l, and
r-s are mean ± s.e.m. One-way two-tailed ANOVA with
Bonferroni correction in d-g, and two-sample two-tailed t-test in
h-l and r. * P < 0.05, ** P<0.01,
*** P<0.001.
Extended Data Figure 1.
Mitochondrial ATP production, NADH, voltage, and pH.
a. Time-course of fire-fly Luciferase luminescence
signal measured from 9 wells after addition of ATP to each well. In this
calibration procedure, different amounts of [ATP] are added to each of the 9
wells as indicated to the right of each line ([ATP]added in
μM). The inset shows the measured luminescence versus
[ATP]added. Purple shaded area highlights the “Working
Range” in which the luminescence signal is a linear function of
[ATP]. b. Measurements of [ATP] produced by isolated
mitochondria. The calibration procedure shown in (a) is used to
convert the measured luminescence signal to [ATP]. The inset shows the
measured mitochondrial matrix free Ca2+ concentration
([Ca2+]m) associated with the ATP measurements in
(b). c. ATP production rate based on the
linear fit to measurements in (b) and scaled to units of
μmol per liter cytosol per second (μM s−1,
scaling is based on 80 g mitochondrial protein per liter cardiomyocyte
cytosol, for more details see main methods section and Williams et. al., 2014).
d. The increase in [NADH] at high
[Ca2+]m (>2 μM) relative to [NADH]
at low [Ca2+]m (<200 nM) using the indicated
combination of carbon substrates (P&M, Pyruvate and Malate; G&M,
Glutamate and Malate; PC&M, PalmitoylCarnitine and Malate, n=4 isolated
mitochondria preparations per group, * P < 0.05 by two-sided t-test).
Data are mean ± s.e.m. [Ca2+]m was measured
with Rhod-2. [NADH] measurements were carried out with a luminescence assay
kit (Promega, USA, for additional details see Supplementary Methods section
1.4). e. Measured TMRM fluorescence ratio
(F573/F46) over the maximal fluorescence ratio
from the dataset. Mitochondria are exposed to 2,4-dinitrophenol ([DNP] in
μM) as indicated. f. Measured extra-mitochondrial TMRM
concentration. g. The mitochondrial inner membrane potential
(ΔΨm) in mV is obtained from the measurements
in (f) according to the method by Scaduto RC & Grotyohann
LW 1999. h. ΔΨm and its corresponding
TMRM fluorescence ratio. Linear fit lines are as indicated in the inset. The
calibration results shown in panels e-h were verified
repeatedly on a daily bases with similar results obtained. i.
Excitation and emission spectra of mitochondria loaded with BCECF
(2′,7′-bis(2-carboxyethyl)-5(6)-carboxyfluorescein
acetoxymethyl ester). 15 independents measurements are shown at the
indicated pH levels (1 μM FCCP is used to equilibrate pHm
and the extra-mitochondrial buffer pH) with the similar spectrum shown.
j. Measured fluorescence ratio from BCECF-loaded
mitochondria at the indicated mitochondrial pH values (pHm). The
calibration was verified in two mitochondrial preps with similar results
obtained k. The pHm measurements following exposure
to sodium acetate at the indicated concentrations. Data are mean ±
s.e.m. (Results are from 3 independent experiments in each of the indicated
7 concentrations of sodium acetate).
Extended Data Figure 3.
Measurements of mitochondrial ATP production when the MCU is blocked by
RU360.
a. Measurements of [Ca2+]m in
isolated cardiac mitochondria plotted as a function of the measured free
extramitochondrial [Ca2+] (i.e.,
[Ca2+]extra,free) in the presence of the selective
MCU blocker RU360 (5 μM). Grey circles are measurements done in the
presence of pyruvate (1mM) & malate (0.5 mM). n= 12
independent experiments. Orange circles are measurements done in the
presence of glutamate (1 mM) & malate (0.5 mM). n= 12
independent experiments. [Ca2+]m was measured with
Fura-2 loaded into the mitochondrial matrix via its acetoxymethyl (AM)
ester, [Ca2+]extra,free was measured with Fluo-4 in
the extra mitochondrial buffer. b. Measurements of ATP
production plotted as a function of the measured
[Ca2+]extra,free. The measurements of ATP
production rates are normalized to the measurements at nominally zero
[Ca2+]extra,free. c. ATP production
at the indicated measured [Ca2+]extra,free (from
experiments in a-b). Grey bars (left) are ATP production with
pyruvate & malate. Orange bars (right) are ATP production with glutamate
& malate. Data are mean ± s.e.m. n=3 isolated mitochondria
preparations per group, * P < 0.05 by one-way two tailed ANOVA with
Bonferroni correction).
The above findings (Figs. 1a–1g) demonstrate regulation of ATP production by
[Ca2+]m, but shed no light on the mechanisms. Fig. 1h–l present
experiments designed to identify the nodes of Ca2+ regulation: they probe the
[Ca2+]m sensitivity of ATP production powered by diverse
metabolic substrates. We examined different carbon sources such as carbohydrates and
amino acids that are metabolized through the tricarboxylic acid cycle (TCA cycle). We
also examined lipids, which undergo catabolic steps in the mitochondrial matrix ―
they only enter the TCA cycle after β-oxidation, during which they regenerate
abundant NADH and FADH2 and are broken down to acetyl-CoA and succinyl-CoA.
We have identified specific carbon substrates that enable the
[Ca2+]m-sensitive ATP production and other that do not (Fig. 1j–l). The extensive mitochondrial literature makes no such differentiation between
mitochondrial substrates, and regards mitochondrial ATP production as
Ca2+-dependent in general (see Supplemental Discussion 2.2–2.3). Our findings show that the
entry of glutamate and pyruvate into the TCA cycle is regulated by
[Ca2+]m, and it is through this regulation that increasing
[Ca2+]m augments ATP production. Glutamate and pyruvate are
the metabolic products of amino acids and carbohydrates. Our findings thus identify
[Ca2+]m as key in regulating mitochondrial utilization of
carbohydrates and amino acids. These findings are consistent with predictions made by
earlier work with purified mitochondrial dehydrogenases[11,12]. Our
results, however, supported by NADH measurements (Extended
Data Figs. 1d), contradict other published predictions. Our results indicate
that neither b-oxidation (of lipids) nor complexes II, III, IV or V (ATP synthase) are
significantly regulated by [Ca2+]m despite arguments to the
contrary[13,14] (see Supplemental Discussion 2.2–2.3).Sensitivity to [Ca2+]m enables ATP production to ramp up
with elevated cellular workload. To test the physiological impact of the
[Ca2+]m sensitivity on ATP production we examined
ΔΨm in cardiac myocytes under conditions where they are
electrically and mechanically active (see Supplementary Video. 1). We provided
specific carbon substrates that enable [Ca2+]m-sensitive ATP
production (pyruvate), and also substrates that support high-rate ATP production that is
insensitive to [Ca2+]m (i.e., membrane-permeant diAM-succinate in
combination with rotenone to block ETC Complex I, see Fig.
1k). We first examined the effect of pyruvate on changes in
ΔΨm when a single cardiac cell is integrated into an
optically clear but mechanically resistive poly(vinyl alcohol) (PVA) hydrogel (Fig. 1m–o)[15]. The cell was
mechanically coupled to the hydrogel by attaching its surface carbohydrates (glycans) to
the hydrogel through a 4-armed PEG-boronic acid crosslinker (Fig. 1o; chemical synthesis in Methods section and Extended Data Fig.
4). Attachment to the PVA gel significantly increased the mechanical load on
the cell. The cell stimulation frequency was increased from 1 to 8 Hz. Notably, despite
increased ATP consumption at 8 Hz, there was no change in ΔΨm
when metabolic substrates that impart Ca2+-sensitivity on ATP production were
present (pyruvate). This suggests that when ΔΨm was being
maintained by NADH production through Ca2+-sensitive metabolism, the electron
transport chain (ETC) could keep ΔΨm hyperpolarized (also see
Extended Data Fig. 1d). In stark contrast,
ΔΨm depolarized during elevated workload when we supplied
substrates that support ATP production that is not boosted by
[Ca2+]m (diAM-succinate + rotenone). With these substrates
present, upon return to low workload conditions, the rate of
ΔΨm depolarization subsides (Fig. 1q–r). These findings
indicate that at elevated workload only Ca2+-dependent ATP production is
sustainable and does not result in a decline of ΔΨm.
Extended Data Figure 4.
Synthesis of 4-armed PEG-boronic acid.
Abbreviations used: HBTU,
1-[bis(dimethylamino)methylene]-1H-benzotriazolium
hexafluorophosphate 3-oxide; DIPEA, diisopropylethylamine; DMF,
N,N-dimethylformamide. The detailed description of the
synthesis procedure is in the methods
section.
While these findings (Figs. 1m–1s) suggest that [Ca2+]m plays
a major physiological role in regulating ΔΨm, they shed no
light on the quantitative relationship between the three critical components of ATP
production — ADP (the substrate), Ca2+ (the regulator), and
ΔΨm (the energy source). These relationships are
investigated under conditions where they can be controlled or measured quantitatively
using isolated cardiac mitochondria. Our findings are shown in the surface plot in Fig. 2a. The value of ΔΨm
mapped in the surface plot represents the points of balance between ETC proton efflux
and proton influx via ATP synthase and any other pathway such as the ANT. ATP synthase
consumes energy stored in ΔΨm by coupling proton influx to the
conversion of ADP to ATP[16]. ANT
consumes energy stored in ΔΨm to exchange ADP with ATP. In the
absence of extra-mitochondrial ADP (and hence in the absence of mitochondrial ADP), ATP
synthase does not produce ATP and does not consume energy (i.e., there is no proton
influx). Under this condition, ΔΨm is stable and energized at
about −170 mV. However, when extra-mitochondrial [ADP] is elevated to 500
μM, ATP production is strongly stimulated. Under the same condition, if
[Ca2+]m is very low (< 200 nM), then the ATP production
leads to significant depolarization of ΔΨm to about −120
mV. However, with an elevated [Ca2+]m (~3 μM) to
stimulate NADH production, the same 500 μM [ADP] increases ATP production with a
more energetic ΔΨm of -145 mV (Fig. 2a–b). From these data,
higher [ADP] augments ATP production but causes depolarization of
ΔΨm, with half-maximal depolarization occurring at [ADP]
≈ 12 μM (Fig. 2c). This
depolarization is significantly counteracted by an increase in
[Ca2+]m, with a half-maximal activation at
[Ca2+]m ≈ 500 nM (Fig.
2d). Thus, our findings demonstrate that the
[Ca2+]m-sensitive processes that support the utilization of energy
in carbon sources to regenerate NADH[13,14,17] stimulate higher proton efflux by the ETC and produce a more
hyperpolarized ΔΨm. We find that this effect of
[Ca2+]m on ΔΨm develops gradually
(seconds) and does not follow fast changes in [Ca2+]m (see Extended Data Fig. 5). Importantly, over the full
range of the [Ca2+]m- and ADP-regulated ATP production as mapped
in Fig. 1a and Fig.
2a, there is no significant change in pHm, as shown in Fig. 2e–g. Under these same conditions there is an approximately 30-fold change of
[Ca2+]m, a 20-fold change of [ADP], a 1.5-fold change in
ΔΨm, leading to a 3-fold change of ATP production. These
observations suggest that although proton movement across the inner membrane enables the
ATP synthase to work, ΔΨm itself is the critical regulator of
ATP production. Taken together, Fig. 2 shows the
importance of [Ca2+]m in enhancing NADH generation, which is
critical in keeping ΔΨm hyperpolarized without material
influence on pHm.
Figure 2.
[Ca2+]m control of
ΔΨm.
a. Steady-state ΔΨm is plotted as
a function of [Ca2+]m and [ADP]added
(n= 22, 18, 25, 20, 21, 27 for 0, 25, 50, 100, 250, 500
μM [ADP]added, respectively). b. Steady-state
ΔΨm is plotted as a function of
[ADP]added when [Ca2+]m is < 200 nM
(black circles, n= 24, 42, 16, 20, 14, 12 for 0, 25, 50, 100, 250, 500 μM
[ADP]added, respectively or is > 2 μM (blue
circles, n= 15, 6, 11, 5, 6, 10 for 0, 25, 50, 100, 250, 500 μM
[ADP]added, respectively) or in the presence of 15 μM
Oligomycin A (red circles, n= 12, 18, 17, 18, 18, 14 for 0, 25, 50, 100, 250,
500 μM [ADP]added, respectively). Data are fit to a
Michaelis–Menten equation. c. [ADP]added at which
ΔΨm depolarization is half-maximal for
[Ca2+]m <200 nm (−) and >2
μM (+). Each bar shows the K0.5, ADP constant
of each of the two fit lines shown in b
(K0.5, ADP ± s.e. of fit in μM,
fitted sample size is given in b, individual data points shown in
a). d. [Ca2+]m at which
ΔΨm depolarization is half-maximal for
[ADP]added of 50, 100, 250 and 500 μM. Each bar shows the
K0.5, Cam constants of each of the four fits
shown as surface plot in a (K0.5, Cam
± s.e. of fit in μM, fitted sample size is given in
a, individual data points shown in a).
e. The time-course of pHm (measured with the
fluorescent indicator BCECF - Methods and
Extended Data Fig. 1) when
[Ca2+]m is <200 nM (black circles, n= 13), or
> 2 μM (blue circles, n= 23) in the absence of ADP.
f. Same as (e) but in the presence of 500
μM ADP (black circles, n= 9, blue circles, n= 22). g.
Quantification of pHm in e-f (n= 13, 9, 23, 22). The
sample size (n) in all panels represents the number of independent experiments.
Data in b, and e-g are mean ± s.e.m. One-way
two-tailed ANOVA with Bonferroni correction in b, d, g and
two-sample two-tailed t-test in c. * P < 0.05, **
P<0.01, *** P<0.001.
Extended Data Figure 5.
ΔΨm kinetics during mitochondrial ATP
production.
a. Time-dependent stopped-flow measurement of
ΔΨm (upper panel) and of the corresponding
[Ca2+]m (lower panel). In this protocol (#1),
mitochondria were incubated with increasing extra-mitochondrial free
Ca2+ and at t = 0, 500 μM [ADP] was added to the
mitochondrial mix. Time-dependent depolarization of
ΔΨm is shown as is the near steady-state of
[Ca2+]m. Black line:
[Ca2+]m= 50 nM (n=8); turquoise:
[Ca2+]m= 480 nM (n=3); light blue:
[Ca2+]m= 750 nM (n=6); grey-blue:
[Ca2+]m= 1.2 μM (n=8); navy blue:
[Ca2+]m= 1.7 μM (n=4). b. Same
as (a) but in this protocol (#2), [Ca2+]m
and [ADP] (500 μM) were increased simultaneously at t = 0
(salmon-colored line, n=7). The injected Ca2+ was set so that the
[Ca2+]m achieved a level between 1.5 and 2
μM at 20 s. c. Same as (b) but in this
protocol (#3), [ADP] (500 μM) rises 10 seconds before
[Ca2+]m was increased at t =0 (grey line, n=6).
The injected Ca2+ was set so that the
[Ca2+]m achieved a level between 1.5 and 2
μM at 20 s, gray line. In panels a-c the sample size (n)
represent the number of independent experiments. d. The
magnitude of ΔΨm depolarization in experiments
a-c. The sample size is the same as in panels
a-c. (* and # denotes statistical comparisonto
black and beige data, respectively). e. Exponential rate
constant of ΔΨm depolarization in experiments
a-b. The sample size is the same as in panels
a-b. In d-e data are mean ± s.e.m.* P
< 0.05, ** P<0.01, *** P<0.001 by one-way two-tailed
ANOVA with Bonferroni correction.
Next, we investigate how physiological activity leads to changes of
[Ca2+]m. First, we examine the movement of cytosolic
Ca2+ into the mitochondrial matrix. [Ca2+]m
increases when Ca2+ enters the mitochondria through the MCU channel in the
inner mitochondrial membrane, the only known route of mitochondrial Ca2+
influx[1,18-22]. By this route, as [Ca2+]i increases to trigger
contraction in heart, it also enters the matrix through MCU and thereby elevates
[Ca2+]m which, as we saw in Fig.1, boosts ATP production. Measurements of MCU-mediated Ca2+
influx into the cardiac mitochondrial matrix under physiological conditions are shown in
Figs. 3a–d. Measuring Ca2+ influx quantitatively at high temporal
resolution is challenging at physiological [Ca2+]i because MCUs
are sparse (15–65 per cardiac mitochondrion[1]) and have low single-channel conductance (~0.1 fS at 500
nM [Ca2+]i and ΔΨm = −160 mV, see
Methods and Williams et. al.,
2013). Nevertheless, we were able to make these biophysical measurements for the first
time using stopped-flow fluorometry, where Ru360-inhibitable mitochondrial
Ca2+ influx was quantified with millisecond resolution (Extended Data Fig. 6). Fluo-4 or fluo-4FF was used to measure
extramitochondrial (i.e., cytosolic) [Ca2+]i, while
[Ca2+]m and ΔΨm were measured with
fura-2 and TMRM, respectively; all measurements were performed under identical
conditions (see Methods). Fig. 3a shows MCU-mediated Ca2+ influx as a
function of [Ca2+]i while Fig.
3b shows the relative MCU conductance as a function of
[Ca2+]i (see Methods).
These measurements are used to obtain the number of open MCU channels as a function of
[Ca2+]i (For more details see Supplemental Discussion section 2.4) Our
data provide an unambiguous result — the number of open MCU channels remains
essentially unchanged over the physiological range of [Ca2+]i in
cardiac mitochondria, as shown in Fig. 3c.
Furthermore, our data show a surprisingly simple result: As the availability of the
conducting ion increases so does its flux, and as ΔΨm becomes
less negative, MCU-mediated Ca2+ flux decreases, following the
electrochemical driving force for Ca2+ entry into the mitochondrial matrix
(see Fig. 3d). The result is surprising because
other investigators have reported that the MCU has a [Ca2+]i
“threshold”[23,24] of ~1 μM for conducting
Ca2+, below which no Ca2+ flux is seen. In contrast, we see no
threshold, a finding which suggests that a threshold may not be a common feature of all
tissues (Supplemental Discussion
section 2.5). Furthermore, the [Ca2+]i-gating functions
of the MCU[23,24] that regulate the number of open MCU channels are not observed
by us in cardiac mitochondria under the conditions of these experiments. The putative
purpose of the gating/threshold combination is to limit excessive mitochondrial
Ca2+ loading[23,24]. However, our quantitative
measurements suggest that this can be achieved by the low number of MCU channels in
heart. Furthermore, the behavior of cardiac myocyte MCUs shown here suggests that
[Ca2+]m should track [Ca2+]i in heart
without excessive weight being given to elevated [Ca2+]i
transients.
Figure 3.
[Ca2+]m dynamics and MCU Ca2+
conductance.
a. Stopped-flow measurement of the MCU-dependent
Ca2+ influx (Jmcu) scaled to a liter of cytosol (see
Methods and ref[7]). Jmcu (μM
·s−1) is plotted as a function of measured
[Ca2+]i (n= 63 independent experiments, each with
[Ca2+]i, [Ca2+]m and
ΔΨm measured). Inset shows zoomed-in region between
0 and 3 μM [Ca2+]i. Linear least-squares fit to the
filled circles is shown (slope = 1.2.). Stopped-flow data are shown in Extended Data Fig. 6. b. MCU
conductance (G) for each of 63 experiments shown in (a) normalized
to the minimal conductance (Gmin) of each dataset (G/Gmin)
plotted as a function of [Ca2+]i where G =
JmcuC*10−6/(ΔΨm*10−3-(RT/2F)*ln([Ca2+]i/[Ca2+]m),
(see Methods). Inset shows zoomed-in region
between 0 and 3 μM [Ca2+]i. Linear least-squares
fit line to the filled circles is shown (slope = 6.1). c. Number of
open MCUs per mitochondrion (NPo) plotted as a function of
[Ca2+]i. Taken from (b) after dividing by
the number of mitochondria per liter cytosol (see Methods) and dividing by the [Ca2+]i-dependent
unitary conductance of MCU[7,18]. Linear least-squares fit to
the filled circles is shown (slope = 0.116, intercept = 7.48). d.
MCU Ca2+ influx (Jmcu, μM
·s−1) plotted as a function of
ΔΨm. [Ca2+]i and
ΔΨm were measured as in (a) but using
a multi-well plate reader. ΔΨm was set by using a
K+ gradient and the K+ ionophore valinomycin (see
Methods and Fig. 4). [Ca2+]i was set to 15
μM (n= 4, 7, 4 independent experiments for
ΔΨm = −155, −122, −92 mV
groups, respectively). MCU blocker Ru360 (1 μM) reduced JMCU
to near zero (n= 6 independent experiments). Data are mean ± s.e.m.
e. Deconvolved Airyscan confocal image showing the fluorescence
of the mitochondrially-targeted Ca2+-sensor MityCam expressed in a
cardiomyocyte. Note distinct MityCam localization in individual mitochondria.
f. Confocal line-scan images from a cardiomyocyte expressing
MityCam; top panels show the fluorescence of Rhod-2 (tripotassium salt, loaded
via the patch-clamp pipette); lower panels show MityCam fluorescence. To
stimulate [Ca2+]i transients the membrane potential is
stepped repeatedly from a holding level of −80 mV to 0 mV every 2
seconds. Isoproterenol (500 nM) is applied at the times indicated. Note that
Ca2+ binding reduces the fluorescence of
MityCam. g. The time-course of changes in
[Ca2+]i and [Ca2+]m from the
respective fluorescence measurements shown in panel f. The experiments shown in
panels e-j were repeated independently with similar results (n=9
cells).h. Time-averaged [Ca2+]m vs.
time-averaged [Ca2+]i (n= 9 cells). Data are mean ±
s.e.m. i-j. Fast Fourier transform showing the frequency
composition of [Ca2+]i and [Ca2+]m
signals (n= 9 cells).
Extended Data Figure 6.
Stopped-flow measurements of MCU Ca2+ flux and its driving
force.
a and e. Representative stopped-flow time-dependent
measurements of extra-mitochondrial free Ca2+ (i.e.,
[Ca2+]extra,free). Mitochondria in uptake assay
buffer (uAB) with low [Ca2+]extra,free (<100
nM) are mixed with uAB buffer with added [Ca2+] 1 ms before
fluorescence measurements begin. The levels of added [Ca2+] are
set so that at the beginning of the measurements the [Ca2+] added
will be as indicated in the inset. In (a)
[Ca2+]extra,free is measured with Fluo-4 in the
uAB and in (e) with Fluo-4FF. b and f. The
corresponding time-dependent measurements of matrix free Ca2+
(i.e., [Ca2+]m). Insets showing the corresponding
time-dependent measurements of ΔΨm. c and
g. The corresponding time-dependent measurements of total
extra-mitochondrial Ca2+
([Ca2+]extra,Total). The
[Ca2+]extra,Total is obtained from the Fluo-4 or
Fluo-4FF signals (for more details see the methods section). d and h. MCU Ca2+
influx (Jmcu) is the first derivative of the
[Ca2+]extra,Total. The Jmcu is scaled
to units of μmol per liter cytosol per second (μM
s−1, scaling is based on 80 g mitochondrial protein
per liter cardiomyocyte cytosol, for more details see main methods section and Williams et.
al., 2014). The shown stopped flow experiments were repeated
independently 63 times with similar results at each
[Ca2+]extra,free as indicated in Fig 3a.
Part two of our examination of the movement of cytosolic Ca2+ into
the mitochondrial matrix focuses on simultaneous measurements of
[Ca2+]i and [Ca2+]m under physiological
conditions in patch-clamped ventricular myocytes. The physiological context of cytosolic
and mitochondrial Ca2+ is shown in Fig.
3e–j in myocytes patch-clamped
and stimulated by 100-ms depolarizations at 0.5 Hz. [Ca2+]m was
measured with a mitochondrially-targeted fluorescent Ca2+ sensor, MityCam,
(characterized in Extended Data Fig. 7), while
Rhod-2 salt loaded into the cytosol via the patch pipette reported
[Ca2+]i. The calibrated confocal fluorescence images and
signals are shown in Fig. 3e–g. These data show that in the quiescent state,
[Ca2+]i and [Ca2+]m are stable and
[Ca2+]m is 50–100 nM higher then
[Ca2+]i (Fig.
3g–h). Every
depolarization-triggered heartbeat evokes a [Ca2+]i transient
(Fig. 3g and i). With repeated depolarizations, the [Ca2+]i
transient peaks become larger (as sarcoplasmic reticulum Ca2+ content
increases with stimulation), while the diastolic [Ca2+]i and
[Ca2+]m both rise slowly (Fig.
3g, j). These findings demonstrate that
rhythmic elevations of [Ca2+]i do not cause synchronized large
transients of [Ca2+]m (Fig.
3i–j). Instead, a series of
cytosolic Ca2+ transients causes a gradual beat-dependent elevation of
[Ca2+]m. Thus, in a physiological context, a single heartbeat
cannot materially change [Ca2+]m. Rather, a series of heartbeats
and their pattern control [Ca2+]m and ATP production.
Extended Data Figure 7.
Characterization of MityCam; a mitochondrially targeted
Ca2+-sensitive fluorescent-protein probe expressed in heart
muscle cells.
a. MityCam fluorescence versus
[Ca2+]m. Note that Ca2+ binding
decreases MityCam fluorescence. Measurements are in
saponin-permeabilized cardiomyocytes; [Ca2+]m is set
using the Ca2+ ionophore ionomycin (2 μM). The
extracellular (bath) solution contains Rhod-2 (tripotassium salt,
cell-impermeant) to measure the bath [Ca2+], a proton ionophore
carbonyl cyanide m-chlorophenyl hydrazone (CCCP, 500 nM) to set the
mitochondrial pH, rotenone (400 nM) to block the ETC and the production of
ROS, and oligomycin (5 mM) to block reverse-mode consumption of ATP by the
ATP synthase, pH 7.8. Fit curve is a single-site binding model
(n = 30 cells). b. Top: Confocal
line-image from an intact cardiomyocyte expressing MityCam. Bottom: The
time-course of changes in [Ca2+]m from the confocal
fluorescence measurements. Caffeine (10 mM) was applied for 10 seconds via a
local micro-perfusion system to rapidly trigger Ca2+ release from
the sarcoplasmic reticulum at the indicated times (highlighted with gray
shading). The experiment was repeated independently with n=10 cells with
similar results. c. The average time-course of changes in
[Ca2+]m following caffeine applications.
d. Confocal line-image from an intact cardiomyocyte
expressing MityCam in a bath solution devoid of Ca2+ (chelated by
1 mM EGTA) and treated with thapsigargin (1 μM) for 10 minutes prior
to imaging to deplete the sarcoplasmic reticulum of Ca2+. Top
panel shows MityCam fluorescence; middle panel shows the fluorescence of
sulforhodamine (sulforhodamine is included in the micro-perfusion solution
to indicate the exact duration of 10 mM caffeine application). Lower panel
shows the time-course of changes in [Ca2+]m from the
confocal fluorescence measurements. Note that throughout the entire time
course of the experiment the extracellular solution is devoid of
Ca2+ and also contains 1 μM thapsigargin. The
experiment was repeated independently with n=11 cells with similar results.
e. Confocal images of cardiac mitochondria isolated from
MityCam expressing cardiomyocytes. f. Measurements of
[Ca2+]m from isolated single mitochondria
expressing MityCam. Top panel (i) shows MityCam fluorescence; lower panel
(ii) shows sulforhodamine fluorescence, which indicates the duration of
micro-perfusion of 100 μM Ca2+ (see bars above the top
panel). Mitochondria isolated from MityCam-expressing cardiomyocytes are
adhered to a glass coverslip for confocal microscopy measurements. Rapid
step (2–3 ms rise time) of [Ca2+] from 0 (1 mM EGTA) to
100 μM is achieved via a micro-perfusion system. Sulforhodamine is
included in the solution applied via the micro-perfusion system to indicate
when a mitochondrion is exposed to the solution containing 100 μM
Ca2+. The experiment in e-f were repeated
independently with n=18 mitochondria with similar results. g.
the average time-course of changes in [Ca2+]m
following the step increase of Ca2+ from 0 to 100 μM
(black line). h. Same as (g) but for comparison to
another Ca2+ sensitive fluorescent indicator, MityCam-expressing
mitochondria are also loaded with the fluorescent Ca2+ indicator
Rhod-2 via its acetoxymethyl (AM) ester form (Rhod-2 AM). To accelerate the
rate of [Ca2+]m rise [Ca2+] is raised to 1
mM, all solutions also contain ionomycin (5 μM), FCCP (5 μM),
oligomycin (1 μM), pH = 7.8. Green trace for MityCam
(n=12 mitochondria) and red for Rhod-2
(n=9 mitochondria). The time at which 1 μM
[Ca2+]m is measured is indicated by arrows, this
time point is obtained by converting the shown fit lines to units of
μM [Ca2+]m. For additional details see Boyman
et al., 2014.
The clear role of ΔΨm in regulating ATP production, as
shown in Figs. 1–2, is examined quantitatively in Fig. 4. Isolated mitochondria were used in these experiments without
high-energy substrate, and were depleted of [Ca2+]m for the
initial experiments to minimize the [Ca2+]m -dependent
contributions. ΔΨm was controlled independently using
valinomycin (a K+ ionophore[25]) in combination with the K+ gradient across the inner
mitochondrial membrane; ΔΨm was measured and calibrated with
TMRM. With all other factors held constant, ATP production was measured as a function of
ΔΨm (see Methods). The
resulting findings were unexpected. The curve is concave-upward and shows ATP production
accelerating as ΔΨm is increasingly hyperpolarized. To examine
further the role of [Ca2+]m, the experiment was repeated at high
[Ca2+]m and in the presence of high-energy substrate –
with all other conditions held constant. Fig. 4a
shows that the relationship was virtually identical in high and low
[Ca2+]m – confirming our earlier findings that
[Ca2+]m does not directly regulate the ATP synthase (Fig. 1k–l).
Figure 4.
ΔΨm control of ATP production.
a. The dependence of ATP production (μM/s) on
ΔΨm in the absence of carbon substrate and at
[Ca2+]m < 200 nM (green circles,
n= 77 independent experiments), or with Pyruvate and Malate
at [Ca2+]m < 200 nM (black circles,
n= 72 independent experiments), or with Pyruvate and Malate
at [Ca2+]m > 2 μM (blue circles,
n= 65 independent experiments).
ΔΨm was set by using a fixed K+ gradient
and the K+ ionophore valinomycin (see Methods). The green line is an empirical fit to the data and the red
line corresponds to expected ATP production based on linear changes in driving
force (ΔGdrive), where ATP production rate =
k • ΔGdrive and
the kinetic coefficient (k) is assumed to be constant (see
Supplementary Information
section 1.1 for more details). b. Proposed model for
voltage-energized Ca2+-sensitive ATP production. In this
physiological feedback mechanism, mitochondrial ATP production is tuned to
cellular ATP consumption by cellular Ca2+ signals and ADP
availability. Both [Ca2+]i and [ADP]i rise
during an increase in workload but have opposing effects on
ΔΨm. A rise in cytosolic [ADP] increases ADP
availability to ATP synthase, which couples ATP production to influx of
H+ into the mitochondrial matrix. A rise in
[Ca2+]i increases [Ca2+]m to
stimulate the production of redox-coupled metabolites that provide energy for
the electron transport chain (ETC) to pump protons (H+) out of the
mitochondrial matrix. The dynamic balance of H+ influx by ATP
synthase and H+ efflux by the ETC sets ΔΨm,
which in the presence of [Ca2+]m will be hyperpolarized,
thus, energizing ATP production by ATP synthase.
The IMM voltage-dependence of ATP production by ATP synthase (Complex V) in
cardiac mitochondria reveals how protons in the intermembrane space use
ΔΨm to power the synthase. Up to now, the known voltage
dependence of bacterial ATP synthase has been used as the model system
for predicting the behavior of the mammalianATP synthase[25-28]. The bacterial ATP synthase produces 0 ATP at 0 mV, and ATP production
rises sigmoidally, saturating at −120 mV, with half-saturation at −70
mV[25-28]. Our data in Fig.
4a is the first report of the voltage-dependence of the mammalianATP
synthase. The shape of the curve and its quantitative characteristics should provide
clues into the inner workings of the mammalianATP synthase. The shape of the curve is a
surprise ― it is concave-upwards over the range of ΔΨm
examined and does not suggest saturation. Additionally, in sharp contrast with the
bacterial ATP synthase, which reaches 37% of its maximal rate at −65 mV[25], the mammalian enzyme produces
essentially no ATP until an apparent “threshold” voltage of -65 mV is
reached. Thermodynamically, the −65 mV threshold suggests that when
ΔΨm is more positive than about −65 mV, there is
insufficient energy when protons are bound to the synthase to enable ATP to be
synthesized. Furthermore, Fig. 4a also shows the
increase in ATP production from −70 to −120 mV. Over this voltage range,
the rates of ATP production are consistent with the need for 3 protons transported
across the IMM by ATP synthase for every ATP molecule synthesized from ADP (red line in
Fig. 4a). This follows a “standard
model” of harnessing the energy of protons moving through the voltage field
across the inner membrane to produce ATP[28]. On the other hand, at potentials more negative than −120
mV, the measured rates of ATP production exceed the red line. The slope of the data over
the range −130 to −170 rises to approximately four times that predicted by
the red line. This finding is thus completely unexpected and has not been seen before.
Mechanistically, we do not know why ATP production increases so quickly with
ΔΨm. We propose that the number of protons that move across
the voltage field of the IMM via a single ATP synthase cycle can increase as
ΔΨm hyperpolarizes negative to −120 mV. In which
case, this high rate of ATP production at more hyperpolarized IMM voltages is due to an
increase in the stoichiometry of the ATP synthase (more protons moved per ATP produced),
which we call “adaptive stoichiometry”. A second possibility is a
nonlinear voltage-dependent increase in the “rotation” of the C-ring of
ATP synthase with unchanged stoichiometry, which may be termed “adaptive
kinetics”. While one or more of these hypothesized voltage-sensitive mechanisms
may apply, we do not yet have experimental techniques that enable us to determine which.
Nevertheless, it is clear from the data that the voltage-dependence shown in Fig. 4a differs radically from the measured
voltage-dependence of the bacterial ATP synthase. This feature may represent an
improvement of metabolic adaptation in mammalian systems. It enables a higher rate of
ATP production when it is needed and when the energy is available in the form of
ΔΨm. Additional discussion of several likely important
features of the mammalianATP synthase is presented in the Supplemental Discussion section 2.6 and in
Supplemental Information section
1.1.Our examination of ATP production and its regulation in the heart is diagrammed
in Fig. 4b. We found that mitochondrial production
of ATP is controlled by ΔΨm, which is sensitive to [ADP] and to
[Ca2+]m. We propose that the ΔΨm
dependence of ATP production that we show here in cardiac mitochondria is a general
feature of mammalian mitochondria. In support of this view, we carried out similar
experiments with skeletal muscle mitochondria, and found the same
ΔΨm dependence of ATP production (see Extended Data Fig. 8). Nevertheless, these and other and
tissue-specific mitochondrial features need further study. For example, in virtually all
tissues the basal and dynamic ATP consumption rates are likely to be different[2,3].
Furthermore, the dynamic [Ca2+]i signals are also generally
cell-type- and tissue-specific[29,30]. Moreover, we and others show that MCU
properties vary significantly in different eukaryotic species[19] and tissues[1] (see Extended Data Fig. 8
that compares our measurements of cardiac MCU to skeletal muscle MCU). Taken together,
our findings and the developed quantitative tools lay the foundation to reshape our
thinking and approach to energy utilization under physiological and pathophysiological
conditions and in mitochondrial diseases.
Extended Data Figure 8.
MCU conductance and voltage dependence of ATP production in heart and
skeletal muscle.
a. Measurement of the MCU-dependent Ca2+
influx (Jmcu) (nmole mg−1
s−1) in cardiac mitochondria (green circles, from Fig. 3), skeletal muscle (black circles),
and skeletal muscle with Ru360 (5 μM) (red circles) is plotted as a
function of measured [Ca2+]i (n = 63, n = 87, and n =
12 independent experiments, respectively, each with
[Ca2+]i, [Ca2+]m and
ΔΨm measured). Linear least-squares fit to the
heart mitochondria data is shown (slope = 0.015). b. MCU
conductance (G) for each measurement shown in (a) normalized to the minimal
conductance (Gmin) of the cardiac dataset (G/Gmin)
plotted as a function of [Ca2+]i. Linear least-squares
fit line to the heart mitochondria data is shown (slope = 6.1).
c. Relative number of open MCUs per mitochondrion plotted
as a function of [Ca2+]i. Taken from (b) after
dividing by the [Ca2+]i-dependent unitary conductance
of MCU and normalized to the minimal number of open MCUs of the cardiac
dataset. Linear least-squares fit to the heart mitochondria data is shown
(slope = 0.051, intercept = 3.3). For skeletal muscle data under
[Ca2+]i of 1.5 μM the measurements were
done using stopped flow as described in Extended Data Fig 5. Jmcu at
[Ca2+]i above 1.5 μM was collected using a
multi-well plate reader with ΔΨm set using a
K+ gradient and the K+ ionophore valinomycin.
Skeletal muscle data is fit to a modified Hill equation with a
K0.5 of 7.9 μM and a Hill coefficient
of 2.95. d. The dependence of ATP production on
ΔΨm in the absence of carbon substrates and at
[Ca2+]m < 200 nM. The measurements of ATP
production rates are normalized to the minimal production rate of each data
set. Measurements from heart mitochondria are shown in green circles
(n= 77, replotted from Fig. 4a), the measurements from skeletal muscle mitochondria are
in shown in black circles (n= 45 independent experiments).
ΔΨm was set by using a fixed K+
gradient and the K+ ionophore valinomycin (see Methods).
METHODS
Mitochondria isolation.
6–10-week-old Sprague-Dawley male rats (250–300 gr, from
ENVIGO, USA, stain code # 002) were anesthetized using Isofluorane (10 minutes)
and administered heparin IP (720 U per Kg, 5 minutes). A thoracotomy and fast
excision of the heart was performed, with removal of the atria. The ventricles
were minced in ice cold isolation buffer (IB) containing (in mM): KCl 100, MOPS
50, MgSO4 5, EGTA 2, NaPyruvate 10, K2HPO4 10.
The minced tissue was washed repeatedly with IB until clear of blood. The
remainder of the preparation was conducted in a cold room (4 °C). 20 mL
of IB containing tissue was transferred to a Potter-Elvehjem grinder and
homogenized at high speed for 2 seconds followed by 4 repetitive homogenizations
with a 1-micron clearance pestle on low. The homogenate was centrifuged for 8
min at 600g after which the supernatant was transferred to a new centrifuge
tube. The pellet was resuspended with 10 mL IB and centrifuged for 8 min at
600g. The second supernatant was pooled with the first and centrifuged again for
8 min at 600g. The final supernatant was transferred to a clean centrifuge tube
and spun at 3200g for 8 min. The resulting supernatant was discarded and the
pellet is the mitochondria sample. The mitochondria were then resuspended in
resuspension buffer base solution (RB) consisting of (in mM): KCl 100, MOPS 50,
K2HPO4 1 or 10. The RB1 was RB supplemented with
NaPyruvate (10 mM), EGTA (10 or 40 μM), and with the acetoxymethyl (AM)
ester forms of either a calcium indicator (Rhod-2 AM (3 μM) or Fura-2 AM
(5 μM)) or the pH indicator BCECF AM (10 μM). Mitochondria were
loaded with the respective dye for 30 min after which they were pelleted at
3200g for 8 min. The pellet was then resuspended in RB2 which is RB supplemented
with NaPyruvate (1 mM) and depending on the experiment; either EGTA (40
μM) or 10 μM Fluo-4 was used. Mitochondria in RB2 are pelleted at
3200g for 8 min. A third and final resuspension and pelleting was done using RB3
consisting of RB and either EGTA (40 μM) or 10 μM Fluo-4. The
concentration of mitochondria in mg/mL was quantified by Lowry assay with a
typical rat heart yielding ~15 mg mitochondrial protein. Mitochondria
isolated from this preparation exhibited typical respirometry outputs (Qubit
MitoCell 37 °C - State 3: 178.4 ± 10.6 nmol/mg/min, State 4 +
Oligomycin A: 11.6 ± 1.02 nmol/mg/min, RCR 12.3 ± 1.46, Substrate
1 mM Pyruvate and 0.5 mM Malate) and (Seahorse XFe96 Analyzer 37 °C -
State 3: 110.2 ± 11.5 nmol/mg/min, State 4 + Oligomycin A: 11.6 ±
2.6 nmol/mg/min, RCR 9.4 ± 1.6, Substrate 10 mM Glutamate and 5 mM
Malate). Skeletal muscle mitochondria were isolated from the gastrocnemius
muscle using the protocol described above but with the following modification.
The harvested muscle tissue was minced in ice cold isolation buffer (IB)
containing 5 mM of EGTA and no pyruvate. Mitochondria isolated from this
preparation exhibited typical respirometry outputs (Seahorse XFe96 Analyzer 37
°C - State 3: 87 ± 7.4 nmol/mg/min, State 4 + Oligomycin A: 9.2
± 2.9 nmol/mg/min, RCR 9.5 ± 1.2, Substrate 10 mM Glutamate and 5
mM Malate). All procedures and protocols involving animal use were approved by
the Institutional Animal Care and Use Committee of the University of Maryland
School of Medicine.
Isolation of adult cardiomyocyte.
Isolated ventricular myocytes were obtained from adult male
Sprague-Dawley rats (250–300 g, from ENVIGO, USA, stain code # 002). Rats
were deeply anesthetized by inhalation of vaporized isoflurane and heparinized
(720 U per Kg). Ten minutes after heparin was injected, the heart was rapidly
excised and rinsed with ice cold 500 μM EGTA isolation buffer containing
130 mM NaCl, 5.4 mM KCl, 0.5 mM MgCl2, 0.33 mM NaH2PO4, 10
mM D-glucose, 10 mM Taurine, 25 mM HEPES, and 0.01 unit/mL insulin (pH 7.4)
(adjusted with NaOH). The aorta was quickly cannulated for Langendorff
perfusion. The heart coronary arteries were perfused at 37 °C for 2 min
with EGTA isolation buffer and then perfused for 7 min with isolation buffer
supplemented with 1 mg/mL collagenase (type II; Worthington Bio- chemical, USA),
0.06 mg/mL protease (XIV), 0.06 mg/mL Trypsin, and 0.3 mM CaCl2. The
ventricles were cut down, minced, and kept in the same buffer for additional 6
minutes at 36° C. The myocardium was dispersed to form a cell suspension,
which was then filtered through a Nylon mash filter (300 μm). The
filtrate was spun at 180 g and the cell containing pellet was resuspended in
isolation buffer supplemented with 2 mg/mL BSA. Ca2+ is gradually
added at 4 increments of 0.4 mM every 12 minutes. Cells were allowed to pellet
by sedimentation, resuspended in NT solution, and were used within 4 hours of
isolation. All procedures and protocols involving animal use were approved by
the Institutional Animal Care and Use Committee of the University of Maryland
School of Medicine.
Measuring the dissociation constants of Ca2+ indicators.
Fluorescence titration curves with Ca2+ were done to measure
the [Ca2+] dissociation constants (Kd) of
the indicators used (see Extended Data Fig.
2). The Kd of Fluo-4, Fluo-4FF, and
Rhod-2 are measured in the relevant experimental buffers using the method by
Eberhard M & Erne P[31] as
shown in Extended Data Fig. 2
a–c. The
Kd of Fura-2 and Rhod-2 loaded via their
acetoxymethyl (AM) form into the matrix of isolated mitochondria was measured
using the Ca2+ ionophore Ionomycin to equilibrate the free
mitochondrial Ca2+([Ca2+]m) with the free extra
mitochondrial Ca2+ ([Ca2+]extra, free), (see
Extended Data Fig. 2 d).
Extended Data Figure 2.
Calibration of fluorescence measurements with Ca2+
indicators.
a. Fluo-4 Ca2+ titration curve. Shown is the
fraction of Ca2+-bound Fluo-4 bound at the indicated added
[Ca2+]. Each point is a triplicate average. Titration curves
are carried out in the indicated buffers. b. Fluo-4FF
Ca2+ titration curve. Shown is the fraction of
Ca2+-bound Fluo-4FF at the indicated added [Ca2+].
Each point is a triplicate average. c. Rhod-2 Ca2+
titration curve. Shown is the fraction of Ca2+-bound Rhod-2 at
the indicated added [Ca2+]. Each point is a triplicate average.
Titration is done in the absence and presence of PVP (polyvinylpyrrolidone)
in the assay buffer. d. Ca2+ titration curve for
Fura-2AM- or Rhod-2AM-loaded mitochondria. Shown is the fraction of
Ca2+-bound Fura-2 or Rhod-2 at the indicated free
Ca2+ concentration in the mitochondrial matrix
([Ca2+]m). Each point is a triplicate average. 1
μM FCCP and 1 μM of the Ca2+ ionophore ionomycin
are used to equilibrate [Ca2+]m with the
extra-mitochondrial free [Ca2+] (i.e.,
[Ca2+]extra, free). The
[Ca2+]extra, free is measured with Fluo-5N.
Equations fit to the data for panels a-d are detailed in the
main methods section.
Measurements of mitochondrial ATP production &
[Ca2+]m.
Measurements of mitochondrial ATP production rate and
[Ca2+]m were carried out using a BMG LABTECH
CLARIOstar plate reader. Rhod-2 AM loaded mitochondria (0.1 mg per mL) are mixed
in ATP production assay buffer (AB) consisting of (in mM): KGluconate 130, KCl
5, K2HPO4 1 or 10, MgCl2 1, HEPES 10, EGTA 0.04, BSA 0.5 mg/mL,
D-Luciferin (Sigma) 0.005, Luciferase (Roche) 0.001 mg/mL. A luminescence
standard curve was performed daily over a range of 100 nM to 1 mM ATP with
Oligomycin A (15 μM) treated mitochondria, see Extended Data Fig. 1 a–c. The mitochondria were incubated for 2 minutes prior
to the start of the assay with Ca2+ (0–50 μM added) and
metabolic substrates. Assays were initiated by injection of 100 μL of ADP
(50–500 μM) and luciferin/luciferase in AB to bring the final
volume to 200 μL. Luminescence signal is recorded for 20 seconds with 1
second integration. In the absence of ADP only ~10 nM ATP is present in
the system. An automated sequence was used to assess each well first for
luminescence then subsequently for fluorescence, see Extended Data Fig. 1 a–c for representative traces and analysis. ATP
production rates are scaled to a liter of cardiomyocyte cytosol (μM
s−1, scaling is based on 80 gram mitochondrial protein per
liter cardiomyocyte cytosol)[7].
[Ca2+]m was measured via Rhod-2 fluorescence
(excitation: 554 ± 4 nm, emission: 607 ± 24 nm) with a
FMax and FMin obtained daily (FMin at 2 mM
EGTA, FMax at 2 mM Ca2+). The quantitative
[Ca2+]m values were obtained according to the
following equation (1):
Were Kd,R2m = 1.74 μM,
obtained as described above, also see Extended
Data Fig. 2 d. Critical for each isolated mitochondria test was the
purification of ADPstocks. Briefly; Na ADP (Sigma) or K ADP (Sigma) were
dissolved in a reaction buffer containing (in mM): Na ADP or K ADP 500, Glucose
10, Tris 50, MgCl2 5, and 50 U/mL Hexokinase, pH 7.4. The reaction
was given 1 hour at 30 °C after which the solution was filtered using
filtered centrifugal tubes with a molecular cut-off of 3,000 Dalton (Amicon
Ultra, Milipore, Ireland). The concentration of the ADP stock was re-assessed by
measuring absorbance at 260 nm and using an extinction coefficient of 15,400
M−1cm−1 according to the
Beer–Lambert law.
Measurements of ΔΨm &
[Ca2+]m.
Measurements of ΔΨm and
[Ca2+]m were carried out using either a BMG LABTECH
CLARIOstar plate reader or Stopped-Flow instrument (SF-300×, KinTek,
USA). In these experiments, Fura-2 AM loaded mitochondria (0.25 mg per mL) were
mixed in ATP production assay buffer (AB) without BSA and supplemented with 0.5
μM TMRM (2 μM TMRM per 1 mg per mL mitochondrial protein). The
CLARIOstar was used for experiments testing ΔΨm
depolarization over a range of both Ca2+ (0–50 μM
added) and ADP (0–500 μM) using Pyruvate (1 mM) and Malate (0.5
mM) for substrate. After 2 minutes of incubation with substrate and
Ca2+, assays were initiated by injection of 100 μL of ADP
to bring the final volume to 200 μL. TMRM (excitation: 546 ± 4 nM
and 573 ± 5 nm, emission: 619 ± 15 nm) and Fura-2 (excitation: 335
± 6 nM and 380 ± 6 nm, emission: 490 ± 15 nm) fluorescence
were measured within the same well for 20 seconds. Stopped flow measurements
were done using the same buffers and 3 distinct protocols. Protocol 1 -
mitochondria were pre-incubated for 2 minutes with Ca2+ then
stimulated with 500 μM ADP. Protocol 2 - mitochondria with
[Ca2+]m of less than 50 nM were simultaneously
stimulated with 500 μM ADP and high Ca2+. Protocol 3 -
mitochondria with [Ca2+]m of less than 50 nM were
pre-mixed with 500 μM ADP, followed by mixing with high Ca2+
while keeping constant 500 μM ADP. All 3 protocols were executed for 20
seconds. TMRM (excited with 546 nm and 573 nm, 593–643 nm emission) and
Fura-2 (excited with 340 nm and 380 nm, 491–501 nm emission) signals were
measured in parallel for each injection set. The [Ca2+]m
was obtained according to the following equation (2): where, Kd,F2m = 0.26 μM, was
obtained as described above (see Extended Data
Fig. 2 d). The β (F380,min/F380,max) was
measured daily (typically 2.5–2.8). Fura-2 RMax (340 nm/380
nm) and RMin were obtained daily for both Stopped-Flow and
plate-reader assays. TMRM signal was calibrated using the ratiometric Scaduto
& Grotyohann method[32] as
shown in Extended Data Fig. 1
e–h. The protonophore
2,4-dinitrophenol (DNP) was used to depolarize ΔΨm to
different levels to generate the standard curves of TMRM calibration as shown in
Extended Data Fig. 1 e–h.
Measurements of pHm & [Ca2+]m.
Measurements of pHm and [Ca2+]m were carried out
using a BMG LABTECH CLARIOstar plate reader. In these experiments, Rhod-2 AM and
BCECF AM co-loaded mitochondria (0.25 mg per mL) were mixed in AB. The
mitochondria were incubated for 2 minutes prior to the start of the assay with
Ca2+ (0–50 μM added) and Pyruvate (1 mM) and Malate
(0.5 mM). Assays were initiated by injection of 100 μL of ADP (0 or 500
μM) in AB to bring the final volume to 200 μL. BCECF (excitation:
430±5 nm and 500±5 nm, emission: 540±10 nm) and Rhod-2
signals were recorded for 20 seconds. FMax and FMin was
obtained daily for each indicator (BCECF: FMin pH = 4.5,
FMax pH= 9). The pKa of BCECF-AM in isolated mitochondria was
determined to be 7.26 using mitochondria treated with 1 μM FCCP and
allowed to equilibrate with the extra-mitochondrial pH using an array of
different pH buffers (see Extended Data Fig. 1
i–j for excitation and
emission spectra). Acid-loading experiments using iso-osmotic solutions of Na
Acetate are done to ensure BCECF-AM remained within the mitochondria, see Extended Data Fig. 1 k.
Measurements of mitochondrial Ca2+ influx.
Measurements of mitochondrial Ca2+ influx were carried-out
using Stopped-Flow instrument (SF-300×, KinTek, USA). For physiological
extra-mitochondrial free Ca2+ ([Ca2+]extra,free
< 4 μM) experiments, Fura-2 AM loaded mitochondria (4 mg per ml)
in uptake assay buffer (uAB) were rapidly mixed by the Stopped-Flow with equal
volume of uAB supplemented with Ca2+. Thereby, a step-wise increase
of [Ca2+]extra,free occurs within 1 ms from about 50 nM to
as high as 3 μM. The uAB consisted of (in mM): KCl 130 (Trace Select,
Sigma Aldrich), HEPES 20, Pyruvic acid 10, Malic acid 5,
K2HPO4 1,MgCl2 1, and
Fluo-4 0.003 (Pentapotassium Salt, Thermo Fisher), pH 7.2 with KOH. Na+ was
added to the uAB or to the
isolation buffer in which the mitochondria were suspended and kept (i.e., RB).
The uAB is made with analytical grade deionized water (OmniSolv® LC-MS,
Sigma Aldrich) and contained less than 50 nM of residual [Ca2+].
Under these experimental conditions, Fluo-4 is the single significant buffer of
extra-mitochondrial Ca2+ (See Extended
Data Figs. 2 and 6). Therefore,
Fluo-4 fluorescence can be used for measurements of
[Ca2+]extra,free and the total extra-mitochondrial
Ca2+ ([Ca2+]extra,Total) both in units of
μM using the following equation
(3): where FFluo-4,Min is the fluorescence intensity of
Fluo-4 in the absence of calcium (measured with 2 mM of EGTA in the uAB),
FFluo-4,Max is the fluorescence of the calcium saturated Fluo-4
(measured with 2 mM [Ca2+] in the uAB). The Ca2+
dissociation constant of Fluo-4 (Kd,Fluo4) is taken
as 0.72 μM (See Extended Data Fig.
2). Fluo-4 binds to Ca2+ with 1-to-1 stoichiometry allowing
the calculation of [Fluo-4:Ca2+] in units of μM using the
following equation (4):
The sum of [Ca2+]extra,free and the
concentration of Ca2+ bound to Fluo-4 ([Fluo-4:Ca2+])
yield the [Ca2+]extra,Total using the following equation (5): The first derivative of the time-dependent measured
[Ca2+]extra,Total is the mitochondrial Ca2+
influx. In these experiments, mitochondrial Ca2+ influx is completely
blocked by 1 μM of Ru360, and is therefore identified as MCU flux
(Jmcu) and scaled to a liter of cardiomyocyte cytosol (μM
s−1 scaling is based on 80 gram mitochondrial protein per
liter cardiomyocyte cytosol)[7].
To measure [Ca2+]m mitochondria were loaded with Fura-2 AM
(calibration described above) and loaded with TMRM to measure
ΔΨm in mV (calibration described above). The total
MCUCa2+ conductance
(G) was obtained from the
measurements of Jmcu, [Ca2+]i,
[Ca2+]m, and ΔΨm according to
the following equation (6):
where Vi is the myoplasm volume 18 pL and
is the Nernst reversal potential for
Ca2+. The number of open MCU channels per mitochondrion are
obtained from the measurements of Jmcu,
[Ca2+]i, [Ca2+]m, and
ΔΨm according to the following equation (7): where gmcu is single channel MCU conductance
(gmcu, max = 3.25 pS, Km. mcu = 19 mM
[Ca2+]i[7,18,33]). For experiments where
[Ca2+]extra,free is stepped to values between
4–12 μM, Fluo-4FF (Kd,Fluo4FF = 21.6
μM, see Extended Data Fig. 2) was
used instead of Fluo-4. These experiments were carried-out with a lower
concentration of mitochondria for 5 seconds (1 mg per ml post mix) with uAB
supplemented with 10 μM of EGTA. Since EGTA is saturated with
Ca2+ when the [Ca2+]extra,free is greater
than 3.5 μM, these experiments were analyzed in the same manner as the
experiments with Fluo-4. Fluo-4 and Fluo-4FF were excited at 485 nm,
520–542 emission. Fura-2 were excited with 340 nM and 380nm,
491–501 emission. TMRM was excited at 546 nM and 573 nm, 593–643
emission.
Valinomycin ΔΨm clamp: mitochondrial ATP production
& mitochondrial Ca2+ influx.
ΔΨm clamp experiments were carried out using a
BMG LABTECH CLARIOstar plate reader. The ΔΨm clamp was
achieved using valinomycin and a K+ gradient established between the
mitochondria and the extra-mitochondrial solution. The extra-mitochondrial
solution is varied from 0 to 70 mM while the mitochondrial matrix contained the
same amount of K+ at the beginning of each experiment (loaded to a
steady-state level of K+ the during the ~3 hour isolation
procedure in buffers with 100 mM K+). Two primary buffers were used
(in mM): 1) K+ Free Buffer - Gluconic Acid 130, Tetramethyl Ammonium
Hydroxide 130, NaH2PO4 1, MgCl2 1, HEPES 20,
and EGTA 0.04, pH 7.2 with HCl. 2) High K+ Buffer - KGluconate 130,
KCl 5, NaH2PO4 1, MgCl2 1, HEPES 20, and EGTA 0.04 pH, 7.2
with KOH. Buffers were supplemented with D-Luciferin (Sigma) 0.005, Luciferase
(Roche) 0.001 mg/mL and 2 μM TMRM per 1 mg per mL mitochondrial protein.
Valinomycin was used at a final concentration of 1 μM. For ATP production
experiments, a 0.5 μL of 100 mg per mL mitochondria stock was added to a
well and re-suspended with a desired amount of high K+ buffer. Three
groups were assessed: 1) no substrate and [Ca2+]m <
200 nM, 2) 1 mM pyruvate and 0.5 mM malate with [Ca2+]m
< 200 nM, and 3) 1 mM pyruvate and 0.5 mM malate with
[Ca2+]m > 2 μM. One injector was then
used to add a desired amount of K+ free buffer bringing the volume of
the well to 190 μL. An initial TMRM and Fura2 measurement was recorded
for 30 s allowing the mitochondria to establish a steady-state
ΔΨm. ATP production was initiated with an injection
of 10 uL 10 mM ADP (final [ADP] 500 μM) and 2 seconds mixing.
Luminescence was measured for 15 seconds with 1 second integration (calibrated
daily). A final TMRM measurement was recorded for 15 seconds to ensure no change
in ΔΨm over the course of the experiment. For
mitochondrial Ca2+ influx vs ΔΨm; the assay
was conducted (in the absence of NaH2PO4 and only 10
μM EGTA) with parallel measurement of TMRM and Ca2+ influx
using Fluo-4FF (as described above). Ca2+ influx experiments were
conducted at a [Ca2+]extra,free of 15–17
μM.
Encapsulation of cardiomyocytes in a resistive hydrogel and measurements of
ΔΨm and sarcomere length.
The 14% Poly (vinyl alcohol) (PVA) hydrogel was prepared daily; 14 gr
PVA was dissolved in 100 mL NT solution by stirring at 90 °C, spun down
at 200 G to remove air, and kept at 25 °C. Equal volumes of isolated
cardiomyocyte suspension and PVA hydrogel were mixed on the glass bottom of a
plastic imaging chamber (Lab-Tek™ Chambered No 1 Coverglass) and
supplemented with cell-to-gel linker to a final concentration of 7.5% linker
(i.e., 4-armed PEG-boronic acid, see next section for synthesis details and
Extended Data Fig. 4). Prior to mixing
of cardiomyocytes with the hydrogel, the cells were incubated for 20 minutes in
NT solution (36 °C) supplemented with 50 nM TMRM. This NT solution
contained Pyruvate (1 mM) and Malate (0.5 mM), or diAM-Succinate (Succinic acid
diacetoxymethyl ester, 10 μM) and rotenone (5 μM), or Succinate (1
mM) and rotenone (5 μM). Incubations and subsequent experiments were done
in solutions of the same composition. The hydrogel was given 4 minutes to
cross-link after which the plastic imaging chamber was connected to electric
stimulation wires and placed inside a microscope stage-top incubator (INU TIZW,
TOKAI HIT, Japan). The system was given another 10 minutes of incubation at 36
°C. Confocal measurements of ΔΨm (with TMRM) and
simultaneous video-based myocyte sarcomere length measurements were then
performed (see supplementary
video). Line-scan confocal imaging was carried out, scanning every 10
ms along the traverse axis of a single cardiomyocyte with the 561 laser line
(Zeiss 880 Airyscan, Germany). Sarcomere length measurements from a live video
image at a frame rate of 300 Hz were carried out using 900B:VSL system (Aurora
Scientific, Canada). Field electrical stimulation (40 Volt/cm) to trigger
contraction at either 1 Hz or 8 Hz was done using MyoPacer (ION optix, USA).
Synthesis of 4-armed PEG-boronic acid
With stirring, “4-ArmPEG-NH2” (nominal MW
5,000, Biochempeg Scientific; 1 g, ~2.0 × 10−4
mol) was dissolved in dry N,N-dimethylformamide (DMF, dried
over CaH2; 3 mL). Diisopropylethylamine (DIPEA; 0.550 mL, 3.16
× 10−3 mol) and 4-carboxyphenylboronic acid (0.262 g,
1.58 × 103 mol) were added sequentially to the stirred
solution. Thereafter,
1-[bis(dimethylamino)methylene]-1H-benzotriazolium
hexafluorophosphate 3-oxide (HBTU; 0.599 g, 1.58 × 103 mol)
was added and stirring of the reaction mixture was continued under argon. As the
reaction progressed, the viscosity of the mixture increased. To achieve steady
stirring required incremental additions of dry DMF totaling 20 mL. The reaction
mixture was stirred for 20 hr after reagent addition was complete. Thereafter,
the mixture was added gradually to vigorously stirred anhydrous ethyl ether (400
mL), whereupon a solid was deposited on the walls of the flask. After stirring
for another 20 min, the clear ether solution was decanted and discarded. The
deposited solid was rinsed with anhydrous ether (2 × 50 mL). The flask
containing the solid residue was purged with a gentle stream of nitrogen to
drive off residual ether. The solid residue was dissolved in water (38 mL) to
give a slightly turbid, light yellow solution, which was filtered to remove fine
particulates. The filtrate was rapidly frozen in liquid N2 and
lyophilized to yield a yellow gel. The gel was dissolved in water (8 mL),
transferred into dialysis tubing (Float-A Lyser G2, MWCO 100 – 500 Da;
Spectrum Laboratories), and dialyzed at room temperature against water (2 L, 18
MΩ·cm). The water was changed three times; each change was made
after 24 hr of dialysis. The content of the dialysis tubing was transferred into
a flask, flash-frozen in liquid N2, and lyophilized to yield a
light-yellow solid (1.282 g, ~92% yield). The product was stored under
argon at −20 °C until use. The 400 MHz 1H-NMR spectrum
of the 4-armed PEG-boronic acid, recorded in
DMSO-d6, is shown in Supplementary Figure 1. The
spectrum shows the expected resonances corresponding to the phenylboronbic acid
moieties at the termini of the PEG arms, at (δ) 8.50
(CONH, broad triplet), 8.18 (BOH,
singlet), and 7.82 (CHCH, doublet of
doublets). Also observed is the expected broad resonance at 3.50, corresponding
to the numerous ethylene linkages in the PEG arms.
Synthesis of succinic acid bis(acetoxymethyl) ester (“diAM
succinate”)
Succinic acid bis(acetoxymethyl) ester (structure shown in Supplementary Figure 2)
was synthesized by alkylation of the dicarboxylate formed in
situ with bromomethyl acetate[34,35]. In brief,
succinic acid was first treated with 2 equivalents of tetra-n
butylammonium hydroxide (~40% solution in methanol); volatile solvent was
removed by rotary evaporation, and the residue was dried overnight under vacuum.
The residue was dissolved in dry DMSO; to this solution were added 2 equivalents
of diisopropylethylaimine and 4 equivalents of bromomethyl acetate. The reaction
was allowed to proceed at 70 °C under inert gas for 5 h. The DMSO was
removed under vacuum and the residue was taken up in 2 M KHSO4 and
extracted with ethyl acetate. The extract was dried
(Na2SO4), filtered, and reduced by rotary evaporation
to a residue, which was purified by flash chromatography on silica gel (35%
ethyl acetate in hexane as eluant) to yield the diAM ester as a white solid. The
400 MHz 1H-NMR spectrum of diAM succinate, acquired in
CDCl3, is shown in Supplementary Figure 2; the
spectrum shows the three expected singlet resonances at (δ) 5.75
(OCH2O), 2.71
(CH2CH2), and 2.12
(CH3CO). High-resolution mass spectrometry (ESI+
mode) showed a base peak at 263.07703, corresponding to [M+H]+,
C10H15O8, which requires 263.076695.
Cardiomyocyte [Ca2+]m and [Ca2+]i
Measurements.
Cardiomyocytes were perfused throughout experiments with a normal
Tyrode’s (NT) bath solution containing (in mM): KCl 5, HEPES 5, glucose
5.5, MgCl2 0.5, NaCl 140, NaH2PO4 0.33,
CaCl2 1.8, and Cytochalasin-D 0.08, adjusted to pH 7.4 with NaOH.
A whole-cell voltage-clamp protocol was used for electric triggering of
[Ca2+]i transients (EPC10, HEKA Elektronik, Germany).
The membrane potential of a patched cardiomyocyte was stepped from a holding
potential of −80 mV to 0 mV for 100 ms every two seconds (0.5 Hz).
Microelectrode pipettes (Series Resistance 1.7–2.2 MΩ) were filled
with an intracellular solution containing (in mM): KCl 20, K aspartate 100,
tetraethylammonium chloride 20, HEPES 10, MgCl2 4.5, di-sodium ATP 4,
di-sodium creatine phosphate 1, Rhod-2, Tripotassium Salt, 0.05, pH 7.2. To
simultaneously measure [Ca2+]m and
[Ca2+]i, confocal line-scan imaging was carried-out
along the transverse axes of a patch-clamped cardiomyoytes.
[Ca2+]m was measured using a mitochondrial targeted
Ca2+-sensitive fluorescent protein-probe MityCam[36] 48 hours after adenoviral
transduction at 600 MOI (excited by the 488 nm Aragon laser line, emission
505–530 nm), [Ca2+]i was measured with the
Ca2+-sensitive fluorescent indicator Rhod-2 (Tripotassium salt)
dialyzed into the cytosol via the patch pipette (excited by the 543 nm
Helium-neon laser line, emission 570–650 nm). For calibration of the
fluorescence signals, at the end of each trial the patched cardiomyocyte was
perfused sequentially with two calibration solution applied via a local
micro-perfusion. The first solution was a NT solution devoid of Ca2+
(chelated with 5 mM EGTA) and supplemented with the Ca2+ ionophore,
Ionomycin (2 μM). The second was a NT solution with 10 mM Ca2+
supplemented with Ionomycin (2 μM). For more details about the
calibration please see Boyman et. al., 2014[37]. [Ca2+]i in μM is obtained
from the measured Rhod-2 fluorescence (FRhod) according to the
following equation (8):
where FRhod,Min is the fluorescence intensity of
Rhod-2 in the absence of Ca2+, FRhod,Max is the
fluorescence of the Ca2+ saturated Rhod-2. The Ca2+
dissociation constant of Rhod-2 (Kd,R2) is taken as
2.5 μM (See Extended Data Fig.
2c).[Ca2+]m in μM is obtained from the measured
MityCam fluorescence (FMityCam) according to the following using the
following equation (9):
where FMityCam,Max is the fluorescence intensity of
MityCam in the absence of Ca2+, FMityCam,Min is the
fluorescence of the Ca2+ saturated MityCam. The Ca2+
dissociation constant of MityCam (Kd,MityCam) is
taken as 0.2 μM (See Extended Data Fig.
7a).
Luminescence measurements of NADH.
Rhod-2 AM loaded mitochondria (2 mg per mL) were mixed in assay buffer
(AB) consisting of (in mM): KGluconate 130, KCl 5, K2HPO4
1 or 10, MgCl2 1, HEPES 10, EGTA 0.04, BSA 0.5 mg/mL. The
mitochondria were incubated for 2 minutes prior to the start of the assay with
nominally free- Ca2+ AB or with AB supplanted with Ca2+
(to raise [Ca2+]m to > 2 μM) and metabolic
substrates (either 1 mM pyruvate + 0.5 mM malate, or 1 mM glutamate + 0.5 mM
malate, or 0.1 mM palmitoylcarnitine + 2.5 mM malate). The
[Ca2+]m was measured, and mitochondria were mixed with
500 μM ADP for one minute before flash frozen by dipping the mitochondria
samples in liquid nitrogen. The subsequent procedures and NADH measurements were
carried out with a luminescence assay kit according to the manufacturer protocol
(Promega, USA). All luminescence and fluorescence measurements were carried out
with a BMG LABTECH CLARIOstar plate reader.
Statistics.
All results are presented as mean ± s.e.m. All experiments were
repeated independently with at least three separate sample preparations. All
experiments require fresh heart tissue, thus statistical analysis was carried
out in parallel with experiments to determine when further repetition was no
longer required. Statistical analysis was performed using either OriginPro 2018
or Matlab R2016a statistical package all with α = 0.05. Where
appropriate, column analyses were performed using an unpaired, two-tailed t-test
(for two groups) or one-way ANOVA with Bonferroni correction (for groups of
three or more). Data fitting convergence was achieved with a minimal termination
tolerance of 10−6. P values less than 0.05 (95% confidence
interval) were considered significant. All data displayed a normal distribution
and variance was similar between groups for each evaluation. Detailed
statistical information is included as Supplementary Table linked to the
online version of this article.
Reporting Summary.
Further information on research design is available in the Nature
Research Reporting Summary linked to this article.
Data availability.
The data that support the findings of this study are available from the
corresponding author upon reasonable request.
Mitochondrial ATP production, NADH, voltage, and pH.
a. Time-course of fire-fly Luciferase luminescence
signal measured from 9 wells after addition of ATP to each well. In this
calibration procedure, different amounts of [ATP] are added to each of the 9
wells as indicated to the right of each line ([ATP]added in
μM). The inset shows the measured luminescence versus
[ATP]added. Purple shaded area highlights the “Working
Range” in which the luminescence signal is a linear function of
[ATP]. b. Measurements of [ATP] produced by isolated
mitochondria. The calibration procedure shown in (a) is used to
convert the measured luminescence signal to [ATP]. The inset shows the
measured mitochondrial matrix free Ca2+ concentration
([Ca2+]m) associated with the ATP measurements in
(b). c. ATP production rate based on the
linear fit to measurements in (b) and scaled to units of
μmol per liter cytosol per second (μM s−1,
scaling is based on 80 g mitochondrial protein per liter cardiomyocyte
cytosol, for more details see main methods section and Williams et. al., 2014).
d. The increase in [NADH] at high
[Ca2+]m (>2 μM) relative to [NADH]
at low [Ca2+]m (<200 nM) using the indicated
combination of carbon substrates (P&M, Pyruvate and Malate; G&M,
Glutamate and Malate; PC&M, PalmitoylCarnitine and Malate, n=4 isolated
mitochondria preparations per group, * P < 0.05 by two-sided t-test).
Data are mean ± s.e.m. [Ca2+]m was measured
with Rhod-2. [NADH] measurements were carried out with a luminescence assay
kit (Promega, USA, for additional details see Supplementary Methods section
1.4). e. Measured TMRM fluorescence ratio
(F573/F46) over the maximal fluorescence ratio
from the dataset. Mitochondria are exposed to 2,4-dinitrophenol ([DNP] in
μM) as indicated. f. Measured extra-mitochondrial TMRM
concentration. g. The mitochondrial inner membrane potential
(ΔΨm) in mV is obtained from the measurements
in (f) according to the method by Scaduto RC & Grotyohann
LW 1999. h. ΔΨm and its corresponding
TMRM fluorescence ratio. Linear fit lines are as indicated in the inset. The
calibration results shown in panels e-h were verified
repeatedly on a daily bases with similar results obtained. i.
Excitation and emission spectra of mitochondria loaded with BCECF
(2′,7′-bis(2-carboxyethyl)-5(6)-carboxyfluorescein
acetoxymethyl ester). 15 independents measurements are shown at the
indicated pH levels (1 μM FCCP is used to equilibrate pHm
and the extra-mitochondrial buffer pH) with the similar spectrum shown.
j. Measured fluorescence ratio from BCECF-loaded
mitochondria at the indicated mitochondrial pH values (pHm). The
calibration was verified in two mitochondrial preps with similar results
obtained k. The pHm measurements following exposure
to sodium acetate at the indicated concentrations. Data are mean ±
s.e.m. (Results are from 3 independent experiments in each of the indicated
7 concentrations of sodium acetate).
Calibration of fluorescence measurements with Ca2+
indicators.
a. Fluo-4Ca2+ titration curve. Shown is the
fraction of Ca2+-bound Fluo-4 bound at the indicated added
[Ca2+]. Each point is a triplicate average. Titration curves
are carried out in the indicated buffers. b. Fluo-4FFCa2+ titration curve. Shown is the fraction of
Ca2+-bound Fluo-4FF at the indicated added [Ca2+].
Each point is a triplicate average. c. Rhod-2Ca2+
titration curve. Shown is the fraction of Ca2+-bound Rhod-2 at
the indicated added [Ca2+]. Each point is a triplicate average.
Titration is done in the absence and presence of PVP (polyvinylpyrrolidone)
in the assay buffer. d. Ca2+ titration curve for
Fura-2AM- or Rhod-2AM-loaded mitochondria. Shown is the fraction of
Ca2+-bound Fura-2 or Rhod-2 at the indicated free
Ca2+ concentration in the mitochondrial matrix
([Ca2+]m). Each point is a triplicate average. 1
μM FCCP and 1 μM of the Ca2+ ionophore ionomycin
are used to equilibrate [Ca2+]m with the
extra-mitochondrial free [Ca2+] (i.e.,
[Ca2+]extra, free). The
[Ca2+]extra, free is measured with Fluo-5N.
Equations fit to the data for panels a-d are detailed in the
main methods section.
Measurements of mitochondrial ATP production when the MCU is blocked by
RU360.
a. Measurements of [Ca2+]m in
isolated cardiac mitochondria plotted as a function of the measured free
extramitochondrial [Ca2+] (i.e.,
[Ca2+]extra,free) in the presence of the selective
MCU blocker RU360 (5 μM). Grey circles are measurements done in the
presence of pyruvate (1mM) & malate (0.5 mM). n= 12
independent experiments. Orange circles are measurements done in the
presence of glutamate (1 mM) & malate (0.5 mM). n= 12
independent experiments. [Ca2+]m was measured with
Fura-2 loaded into the mitochondrial matrix via its acetoxymethyl (AM)
ester, [Ca2+]extra,free was measured with Fluo-4 in
the extra mitochondrial buffer. b. Measurements of ATP
production plotted as a function of the measured
[Ca2+]extra,free. The measurements of ATP
production rates are normalized to the measurements at nominally zero
[Ca2+]extra,free. c. ATP production
at the indicated measured [Ca2+]extra,free (from
experiments in a-b). Grey bars (left) are ATP production with
pyruvate & malate. Orange bars (right) are ATP production with glutamate
& malate. Data are mean ± s.e.m. n=3 isolated mitochondria
preparations per group, * P < 0.05 by one-way two tailed ANOVA with
Bonferroni correction).
Synthesis of 4-armed PEG-boronic acid.
Abbreviations used: HBTU,
1-[bis(dimethylamino)methylene]-1H-benzotriazolium
hexafluorophosphate 3-oxide; DIPEA, diisopropylethylamine; DMF,
N,N-dimethylformamide. The detailed description of the
synthesis procedure is in the methods
section.
ΔΨm kinetics during mitochondrial ATP
production.
a. Time-dependent stopped-flow measurement of
ΔΨm (upper panel) and of the corresponding
[Ca2+]m (lower panel). In this protocol (#1),
mitochondria were incubated with increasing extra-mitochondrial free
Ca2+ and at t = 0, 500 μM [ADP] was added to the
mitochondrial mix. Time-dependent depolarization of
ΔΨm is shown as is the near steady-state of
[Ca2+]m. Black line:
[Ca2+]m= 50 nM (n=8); turquoise:
[Ca2+]m= 480 nM (n=3); light blue:
[Ca2+]m= 750 nM (n=6); grey-blue:
[Ca2+]m= 1.2 μM (n=8); navy blue:
[Ca2+]m= 1.7 μM (n=4). b. Same
as (a) but in this protocol (#2), [Ca2+]m
and [ADP] (500 μM) were increased simultaneously at t = 0
(salmon-colored line, n=7). The injected Ca2+ was set so that the
[Ca2+]m achieved a level between 1.5 and 2
μM at 20 s. c. Same as (b) but in this
protocol (#3), [ADP] (500 μM) rises 10 seconds before
[Ca2+]m was increased at t =0 (grey line, n=6).
The injected Ca2+ was set so that the
[Ca2+]m achieved a level between 1.5 and 2
μM at 20 s, gray line. In panels a-c the sample size (n)
represent the number of independent experiments. d. The
magnitude of ΔΨm depolarization in experiments
a-c. The sample size is the same as in panels
a-c. (* and # denotes statistical comparisonto
black and beige data, respectively). e. Exponential rate
constant of ΔΨm depolarization in experiments
a-b. The sample size is the same as in panels
a-b. In d-e data are mean ± s.e.m.* P
< 0.05, ** P<0.01, *** P<0.001 by one-way two-tailed
ANOVA with Bonferroni correction.
Stopped-flow measurements of MCU Ca2+ flux and its driving
force.
a and e. Representative stopped-flow time-dependent
measurements of extra-mitochondrial free Ca2+ (i.e.,
[Ca2+]extra,free). Mitochondria in uptake assay
buffer (uAB) with low [Ca2+]extra,free (<100
nM) are mixed with uAB buffer with added [Ca2+] 1 ms before
fluorescence measurements begin. The levels of added [Ca2+] are
set so that at the beginning of the measurements the [Ca2+] added
will be as indicated in the inset. In (a)
[Ca2+]extra,free is measured with Fluo-4 in the
uAB and in (e) with Fluo-4FF. b and f. The
corresponding time-dependent measurements of matrix free Ca2+
(i.e., [Ca2+]m). Insets showing the corresponding
time-dependent measurements of ΔΨm. c and
g. The corresponding time-dependent measurements of total
extra-mitochondrial Ca2+
([Ca2+]extra,Total). The
[Ca2+]extra,Total is obtained from the Fluo-4 or
Fluo-4FF signals (for more details see the methods section). d and h. MCUCa2+
influx (Jmcu) is the first derivative of the
[Ca2+]extra,Total. The Jmcu is scaled
to units of μmol per liter cytosol per second (μM
s−1, scaling is based on 80 g mitochondrial protein
per liter cardiomyocyte cytosol, for more details see main methods section and Williams et.
al., 2014). The shown stopped flow experiments were repeated
independently 63 times with similar results at each
[Ca2+]extra,free as indicated in Fig 3a.
Characterization of MityCam; a mitochondrially targeted
Ca2+-sensitive fluorescent-protein probe expressed in heart
muscle cells.
a. MityCam fluorescence versus
[Ca2+]m. Note that Ca2+ binding
decreases MityCam fluorescence. Measurements are in
saponin-permeabilized cardiomyocytes; [Ca2+]m is set
using the Ca2+ ionophore ionomycin (2 μM). The
extracellular (bath) solution contains Rhod-2 (tripotassium salt,
cell-impermeant) to measure the bath [Ca2+], a proton ionophore
carbonyl cyanide m-chlorophenyl hydrazone (CCCP, 500 nM) to set the
mitochondrial pH, rotenone (400 nM) to block the ETC and the production of
ROS, and oligomycin (5 mM) to block reverse-mode consumption of ATP by the
ATP synthase, pH 7.8. Fit curve is a single-site binding model
(n = 30 cells). b. Top: Confocal
line-image from an intact cardiomyocyte expressing MityCam. Bottom: The
time-course of changes in [Ca2+]m from the confocal
fluorescence measurements. Caffeine (10 mM) was applied for 10 seconds via a
local micro-perfusion system to rapidly trigger Ca2+ release from
the sarcoplasmic reticulum at the indicated times (highlighted with gray
shading). The experiment was repeated independently with n=10 cells with
similar results. c. The average time-course of changes in
[Ca2+]m following caffeine applications.
d. Confocal line-image from an intact cardiomyocyte
expressing MityCam in a bath solution devoid of Ca2+ (chelated by
1 mM EGTA) and treated with thapsigargin (1 μM) for 10 minutes prior
to imaging to deplete the sarcoplasmic reticulum of Ca2+. Top
panel shows MityCam fluorescence; middle panel shows the fluorescence of
sulforhodamine (sulforhodamine is included in the micro-perfusion solution
to indicate the exact duration of 10 mM caffeine application). Lower panel
shows the time-course of changes in [Ca2+]m from the
confocal fluorescence measurements. Note that throughout the entire time
course of the experiment the extracellular solution is devoid of
Ca2+ and also contains 1 μM thapsigargin. The
experiment was repeated independently with n=11 cells with similar results.
e. Confocal images of cardiac mitochondria isolated from
MityCam expressing cardiomyocytes. f. Measurements of
[Ca2+]m from isolated single mitochondria
expressing MityCam. Top panel (i) shows MityCam fluorescence; lower panel
(ii) shows sulforhodamine fluorescence, which indicates the duration of
micro-perfusion of 100 μM Ca2+ (see bars above the top
panel). Mitochondria isolated from MityCam-expressing cardiomyocytes are
adhered to a glass coverslip for confocal microscopy measurements. Rapid
step (2–3 ms rise time) of [Ca2+] from 0 (1 mM EGTA) to
100 μM is achieved via a micro-perfusion system. Sulforhodamine is
included in the solution applied via the micro-perfusion system to indicate
when a mitochondrion is exposed to the solution containing 100 μM
Ca2+. The experiment in e-f were repeated
independently with n=18 mitochondria with similar results. g.
the average time-course of changes in [Ca2+]m
following the step increase of Ca2+ from 0 to 100 μM
(black line). h. Same as (g) but for comparison to
another Ca2+ sensitive fluorescent indicator, MityCam-expressing
mitochondria are also loaded with the fluorescent Ca2+ indicator
Rhod-2 via its acetoxymethyl (AM) ester form (Rhod-2 AM). To accelerate the
rate of [Ca2+]m rise [Ca2+] is raised to 1
mM, all solutions also contain ionomycin (5 μM), FCCP (5 μM),
oligomycin (1 μM), pH = 7.8. Green trace for MityCam
(n=12 mitochondria) and red for Rhod-2
(n=9 mitochondria). The time at which 1 μM
[Ca2+]m is measured is indicated by arrows, this
time point is obtained by converting the shown fit lines to units of
μM [Ca2+]m. For additional details see Boyman
et al., 2014.
MCU conductance and voltage dependence of ATP production in heart and
skeletal muscle.
a. Measurement of the MCU-dependent Ca2+
influx (Jmcu) (nmole mg−1
s−1) in cardiac mitochondria (green circles, from Fig. 3), skeletal muscle (black circles),
and skeletal muscle with Ru360 (5 μM) (red circles) is plotted as a
function of measured [Ca2+]i (n = 63, n = 87, and n =
12 independent experiments, respectively, each with
[Ca2+]i, [Ca2+]m and
ΔΨm measured). Linear least-squares fit to the
heart mitochondria data is shown (slope = 0.015). b. MCU
conductance (G) for each measurement shown in (a) normalized to the minimal
conductance (Gmin) of the cardiac dataset (G/Gmin)
plotted as a function of [Ca2+]i. Linear least-squares
fit line to the heart mitochondria data is shown (slope = 6.1).
c. Relative number of open MCUs per mitochondrion plotted
as a function of [Ca2+]i. Taken from (b) after
dividing by the [Ca2+]i-dependent unitary conductance
of MCU and normalized to the minimal number of open MCUs of the cardiac
dataset. Linear least-squares fit to the heart mitochondria data is shown
(slope = 0.051, intercept = 3.3). For skeletal muscle data under
[Ca2+]i of 1.5 μM the measurements were
done using stopped flow as described in Extended Data Fig 5. Jmcu at
[Ca2+]i above 1.5 μM was collected using a
multi-well plate reader with ΔΨm set using a
K+ gradient and the K+ ionophore valinomycin.
Skeletal muscle data is fit to a modified Hill equation with a
K0.5 of 7.9 μM and a Hill coefficient
of 2.95. d. The dependence of ATP production on
ΔΨm in the absence of carbon substrates and at
[Ca2+]m < 200 nM. The measurements of ATP
production rates are normalized to the minimal production rate of each data
set. Measurements from heart mitochondria are shown in green circles
(n= 77, replotted from Fig. 4a), the measurements from skeletal muscle mitochondria are
in shown in black circles (n= 45 independent experiments).
ΔΨm was set by using a fixed K+
gradient and the K+ ionophore valinomycin (see Methods).
Authors: Federico Cividini; Brian T Scott; Jorge Suarez; Darren E Casteel; Sven Heinz; Anzhi Dai; Tanja Diemer; Jorge A Suarez; Christopher W Benner; Majid Ghassemian; Wolfgang H Dillmann Journal: Diabetes Date: 2020-12-10 Impact factor: 9.461