| Literature DB >> 31940866 |
Gianluca Ciancaleoni1, Francesca Nunzi2,3, Leonardo Belpassi3.
Abstract
Theoretical bondiEntities:
Keywords: bond analysis; halogen bond; non-covalent interactions
Year: 2020 PMID: 31940866 PMCID: PMC7024339 DOI: 10.3390/molecules25020300
Source DB: PubMed Journal: Molecules ISSN: 1420-3049 Impact factor: 4.411
Figure 1Contour plots of the electron density difference between XeAuF molecules and the Xe and AuF fragments. The positive contour levels (red) range from 0.005 to 0.2 e/bohr3 with a step of 0.005, while the negative ones (black) range from −0.005 to −0.2 e/bohr3 with a step of 0.005. In the bottom part the integrated charge displacement function Δq (see text) is reported as a function of the internuclear distance. The 3D isodensity plot of the electronic charge due to the intermolecular interaction (cutoff = ± 0.005 e/bohr−3, with negative/positive values in blue/red).
Figure 2(a) Potential energy curves (interaction potential V vs. Ar-I2 distance R) for the selected ground state Ar-I2 complexes in the three configurations [solid lines, CCSD(T)/AV5Z level of theory; dashed lines, curves from semi-empirical model]. (b) CD curves of the ground state Ng-I2 complexes in the linear configuration - dots represent the atomic nuclei position on the z axis and vertical lines mark the isodensity boundaries. The inset shows the 3D isodensity plots of the electron density change, accompanying bond formation (∆ρ = 8∙10−6 me/bohr3, negative/positive values in yellow/silver). (adapted from Reference 17).
Figure 3Charge displacement (CD) curves for the vertex configuration of the O2-CCl4 system in the collinear (a) and perpendicular (b) orientations of the O-O bond and for the Ar-CCl4 system (c). (d) CD curves for the O2-CCl4 system in the collinear (red) and perpendicular (blue) orientations and that obtained as weighted average in the ratio 1:2 (curve with dashed line), according to their degeneracy, are compared with the CD curve of the Ar-CCl4 system. The insets show the 3D isodensity plots of the electronic charge due to the intermolecular interaction (cutoff = ±0.05 me/bohr3, with negative/positive values in red/blue). (from Reference 56, Copyright © 2020, American Chemical Society, with permission.).
Figure 43D isodensity plots (cut-off = ±0.15 me/bohr3, negative/positive values in red/violet) and correspondent CD curves of the electron density change due to the intermolecular interaction for the CF4-H2O (a) and CCl4-H2O systems at the global minimum optimized geometries (b,c). Dots correspond to the projection of the nuclei positions on the z axis. The axis origin is at the tetrahedral carbon. The vertical dashed lines mark the isodensity boundary between the fragments. (Reproduced from Reference 57 with permission from the Centre National de la Recherche Scientifique (CNRS) and The Royal Society of Chemistry).
Figure 5(a) Charge Displacement function for I3−. The black dots represent the z coordinate of the atoms. The light blue vertical line identifies the boundary between the two fragments. Overprint: contour map of the change of electronic density upon formation of the complex I3− from I2 and I−. The direction of the charge flow is red → blue. Density value at the isosurfaces: ±2.5 me/bohr3; (b) Dependence of charge transfer (CT) on α (dX1–X2/dX2–X3) for trihalide systems. The black line is the best linear fit (CT = 0.73 – 0.34α, r2 = 0.9694). (Reproduced from Reference 61 Copyright © 2020, John Wiley and Sons, with permission.).
Figure 6(a) 3D contour map of the change of electronic density upon formation of the adduct HMTA/NBS (1:1). Blue (red) isosurfaces identify regions in which the electron density increases (decreases). Density value at the isosurfaces: ± 2 me/bohr3. (b) CD functions for HMTA/NBS adducts with different stoichiometry. The black dots represent the z coordinate (or the range of coordinates) of the atoms. The light blue vertical band identifies the range of the inter-fragment boundaries. (Reproduced from Reference 64 with permission from The Royal Society of Chemistry).
NOCV-CD bond analysis results for an organometallic system (charge transfers, CTk, in electrons).
| Fragments | CT0 | CT1 | CT2 | CT3 | CTtot,back |
|---|---|---|---|---|---|
| [( | 0.359 | −0.049 | −0.030 | −0.013 | −0.092 |
| [ | 0.346 | 0.024 | −0.021 | −0.016 | −0.037 |
| [( | 0.372 | −0.040 | −0.030 | −0.010 | −0.080 |
| [( | 0.344 | 0.020 | −0.021 | −0.015 | −0.036 |
| [ICF2CF3]…[Au( | −0.039 | 0.005 | - | - | - |
| [( | 0.375 | −0.044 | −0.027 | −0.010 | −0.081 |
| [ | 0.373 | 0.033 | −0.018 | −0.014 | −0.032 |
| [ | −0.106 | 0.024 | - | - | - |
Figure 7(a) Isodensity surfaces (±1.2 me/bohr3) for the deformation maps relative to the Δρk (k = 0 and 1) contributions of the [(SeU)Au(NAC)]+…[NIS] bond. The charge flux is red → blue; (b) CD functions (CDk, k = 0 and 1) for the [(SeU)Au(NAC)]+…[NIS] bond. Black dots indicate the z position of the atomic nuclei. A yellow vertical band indicates the boundary between the fragments. (Reproduced from Reference 37 with permission from the PCCP Owner Societies.).