Literature DB >> 25656525

Asymmetric bifurcated halogen bonds.

Martin Novák1, Cina Foroutan-Nejad, Radek Marek.   

Abstract

Halogen bonding (XB) is being extensively explored for its potential use in advanced materials and drug design. Despite significant progress in describing this interaction by theoretical and experimental methods, the chemical nature remains somewhat elusive, and it seems to vary with the selected system. In this work we present a detailed DFT analysis of three-center asymmetric halogen bond (XB) formed between dihalogen molecules and variously 4-substituted 1,2-dimethoxybenzene. The energy decomposition, orbital, and electron density analyses suggest that the contribution of electrostatic stabilization is comparable with that of non-electrostatic factors. Both terms increase parallel with increasing negative charge of the electron donor molecule in our model systems. Depending on the orientation of the dihalogen molecules, this bifurcated interaction may be classified as 'σ-hole - lone pair' or 'σ-hole - π' halogen bonds. Arrangement of the XB investigated here deviates significantly from a recent IUPAC definition of XB and, in analogy to the hydrogen bonding, the term bifurcated halogen bond (BXB) seems to be appropriate for this type of interaction.

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Year:  2015        PMID: 25656525     DOI: 10.1039/c4cp05532b

Source DB:  PubMed          Journal:  Phys Chem Chem Phys        ISSN: 1463-9076            Impact factor:   3.676


  6 in total

1.  Parametrization of halogen bonds in the CHARMM general force field: Improved treatment of ligand-protein interactions.

Authors:  Ignacio Soteras Gutiérrez; Fang-Yu Lin; Kenno Vanommeslaeghe; Justin A Lemkul; Kira A Armacost; Charles L Brooks; Alexander D MacKerell
Journal:  Bioorg Med Chem       Date:  2016-06-18       Impact factor: 3.641

2.  Strong Tetrel Bonds: Theoretical Aspects and Experimental Evidence.

Authors:  Mehdi D Esrafili; Parisasadat Mousavian
Journal:  Molecules       Date:  2018-10-15       Impact factor: 4.411

Review 3.  Could Quantum Mechanical Properties Be Reflected on Classical Molecular Dynamics? The Case of Halogenated Organic Compounds of Biological Interest.

Authors:  Lucas de Azevedo Santos; Ingrid G Prandi; Teodorico C Ramalho
Journal:  Front Chem       Date:  2019-12-13       Impact factor: 5.221

Review 4.  Charge Displacement Analysis-A Tool to Theoretically Characterize the Charge Transfer Contribution of Halogen Bonds.

Authors:  Gianluca Ciancaleoni; Francesca Nunzi; Leonardo Belpassi
Journal:  Molecules       Date:  2020-01-11       Impact factor: 4.411

5.  Potent DNA gyrase inhibitors bind asymmetrically to their target using symmetrical bifurcated halogen bonds.

Authors:  Anja Kolarič; Thomas Germe; Martina Hrast; Clare E M Stevenson; David M Lawson; Nicolas P Burton; Judit Vörös; Anthony Maxwell; Nikola Minovski; Marko Anderluh
Journal:  Nat Commun       Date:  2021-01-08       Impact factor: 14.919

6.  An ETS-NOCV-based computational strategies for the characterization of concerted transition states involving CO2.

Authors:  Diego Sorbelli; Paola Belanzoni; Leonardo Belpassi; Ji-Woong Lee; Gianluca Ciancaleoni
Journal:  J Comput Chem       Date:  2022-02-23       Impact factor: 3.672

  6 in total

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