| Literature DB >> 31936202 |
Karolina Skonieczna-Żydecka1, Dominika Jamioł-Milc1, Krzysztof Borecki1, Ewa Stachowska1, Paulina Zabielska2, Magdalena Kamińska3, Beata Karakiewicz2.
Abstract
Iron deficiency have been found to be linked to sleep disorders. Both genetic and environmental factors are risk factors for skewed iron metabolism, thus sleep disruptions in autism spectrum disorders (ASD). The aim of our study was to assess the prevalence of single nucleotide polymorphisms (SNPs) within transferrin gene (TF) rs1049296 C>T, rs3811647 G>A, transferrin receptor gene (TFR) rs7385804 A>C, and hepcidin antimicrobial peptide gene (HAMP) rs10421768 A>G in Polish individuals with ASD and their impact on sleep pattern. There were 61 Caucasian participants with ASD and 57 non-ASD controls enrolled. Genotypes were determined by real-time PCR using TaqMan SNP assays. The Athens Insomnia Scale (AIS) was used to identify sleep disruptions. There were 32 cases (57.14%) with insomnia identified. In the ASD group, the defined counts of genotypes were as follows: TF rs1049296, C/C n = 41 and C/T n = 20; TF rs3811647, G/G n = 22, G/A n = 34, and A/A n = 5; TFR rs7385804, A/A n = 22, A/C n = 29, and C/C n = 10; and HAMP rs10421768, A/A n = 34, A/G n = 23, and G/G n = 4. There were no homozygous carriers of the TF rs1049296 C>T minor allele in the ASD group. All analyzed SNPs were not found to be linked to insomnia. The investigated polymorphisms are not predictors of sleep disorders in the analyzed cohort of individuals with ASD.Entities:
Keywords: autism spectrum disorders; insomnia; polymorphism
Mesh:
Substances:
Year: 2020 PMID: 31936202 PMCID: PMC7014185 DOI: 10.3390/ijerph17020400
Source DB: PubMed Journal: Int J Environ Res Public Health ISSN: 1660-4601 Impact factor: 3.390
Genotype and allele distributions of the TF, TFR and HAMP SNPs in individuals with ASD, without ASD, with ASD and insomnia and with ASD without insomnia.
| Polymorphism | ASD ( | Non-ASD ( | χ2 (df) | OR (95% CI) | ASD + Insomnia ( | ASD + Non-Insomnia ( | χ2 (df) | OR (95% CI) | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Genotype, | ||||||||||||||||||
| T/T | 0 | (0.00) | 1 | (1.75) | 0 | (0.00) | 0 | (0.00) | ||||||||||
| C/T | 20 | (32.79) | 13 | (22.81) | NA | NA | – | – | 10 | (31.25) | 8 | (33.33) | NA | NA | – | – | ||
| C/C | 41 | (67.21) | 43 | (75.44) | 22 | (68.75) | 16 | (66.67) | ||||||||||
| Allele, | ||||||||||||||||||
| T | 20 | (16.39) | 15 | (13.16) | – | – | 0.5832 | 1.29 | (0.61–2.69) | 10 | (15.62) | 8 | (16.67) | – | – | >0.9999 | 0.93 | (0.36–2.63) |
| C | 102 | (83.61) | 99 | (86.84) | – | – | – | 1.00 | 54 | (84.38) | 40 | (83.33) | – | – | – | 1.00 | ||
| Genotype, | ||||||||||||||||||
| A/A | 5 | (8.20) | 6 | (10.53) | 3 | (9.37) | 2 | (8.33) | ||||||||||
| G/A | 34 | (55.74) | 26 | (45.61) | 0.5447 | 1.2150 (2) | – | – | 17 | (53.13) | 14 | (58.34) | 0.9275 | 0.1505 (2) | – | – | ||
| G/G | 22 | (36.06) | 25 | (43.86) | 12 | (37.50) | 8 | (33.33) | ||||||||||
| Allele, | ||||||||||||||||||
| A | 44 | (36.07) | 38 | (33.33) | – | – | 0.6834 | 1.13 | (0.67–1.92) | 23 | (35.94) | 18 | (37.50) | – | – | >0.9999 | 0.94 | (0.43–2.09) |
| G | 78 | (63.93) | 76 | (66.67) | – | – | – | 1.00 | 41 | (64.06) | 30 | (62.50) | – | – | – | 1.00 | ||
| Genotype, | ||||||||||||||||||
| C/C | 10 | (16.39) | 16 | (28.07) | 7 | (21.87) | 3 | (12.50) | ||||||||||
| A/C | 29 | (47.54) | 25 | (43.86) | 0.2871 | 2.4960 (2) | – | – | 13 | (40.63) | 12 | (50.00) | 0.6234 | 0.9450 (2) | – | – | ||
| A/A | 22 | (36.07) | 16 | (28.07) | 12 | (37.50) | 9 | (37.50) | ||||||||||
| Allele, | ||||||||||||||||||
| C | 49 | (40.16) | 57 | (50.00) | – | – | 0.1502 | 0.67 | (0.40–1.12) | 27 | (42.19) | 18 | (37.50) | – | – | 0.6983 | 1.22 | (0.57–2.68) |
| A | 73 | (59.84) | 57 | (50.00) | – | – | – | 1.00 | 37 | (57.81) | 30 | (62.50) | – | – | – | 1.00 | ||
| Genotype, | ||||||||||||||||||
| G/G | 4 | (6.56) | 1 | (1.75) | 3 | (9.37) | 1 | (4.17) | ||||||||||
| A/G | 23 | (37.70) | 17 | (29.82) | 0.2334 | 2.9100 (2) | – | – | 10 | (31.25) | 8 | (33.33) | 0.7553 | 0.5614 (2) | – | – | ||
| A/A | 34 | (55.74) | 39 | (68.43) | 19 | (59.38) | 15 | (62.50) | ||||||||||
| Allele, | ||||||||||||||||||
| G | 31 | (25.41) | 19 | (16.67) | – | – | 0.1126 | 1.70 | (0.92–3.18) | 16 | (25.00) | 10 | (20.83) | – | – | 0.6567 | 1.27 | (0.51–3.21) |
| A | 91 | (74.59) | 95 | (83.33) | – | – | – | 1.00 | 48 | (75.00) | 38 | (79.17) | – | – | – | 1.00 | ||
χ2, chi-square value; 95% CI, 95% confidence interval; ASD, Autism spectrum disorder; df, degrees of freedom; OR, odds ratio; p (1), p value in two-sided chi-square test; p (2), p value in two-sided Fisher’s exact test.
Analysis of the TF, TFR and HAMP SNPs association with ASD and insomnia (AIS ≥ 6) using genetic inheritance models in individuals with ASD and insomnia (AIS ≥ 6).
| Polymorphism | ASD ( | Non-ASD ( |
| OR (95% CI) | ASD + Insomnia ( | ASD + Non-Insomnia ( |
| OR (95% CI) | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Genetic model | ||||||||||||||
| Co-dominant | ||||||||||||||
| T/T | 0 | (0.00) | 1 | (2.27) | >0.9999 | 0.00 | (0.00–9.66) | 0 | (0.00) | 0 | (0.00) | NA | NA | |
| C/C | 41 | (100.00) | 43 | (97.73) | – | 1.00 | 22 | (100.00) | 16 | 100.00) | – | – | ||
| C/T | 20 | (32.79) | 13 | (23.21) | 0.3057 | 1.61 | (0.69–3.75) | 10 | (31.25) | 8 | (33.33) | >0.9999 | 0.91 | (0.28–2.59) |
| C/C | 41 | (67.21) | 43 | (76.79) | – | 1.00 | 22 | (68.75) | 16 | (66.67) | – | 1.00 | ||
| Dominant | ||||||||||||||
| T/T+C/T | 20 | (32.79) | 14 | (24.56) | 0.4164 | 1.50 | (0.65–3.35) | 10 | (31.25) | 8 | (33.33) | >0.9999 | 0.91 | (0.28–2.59) |
| C/C | 41 | (67.21) | 43 | (75.44) | – | 1.00 | 22 | (68.75) | 16 | (66.67) | – | 1.00 | ||
| Recessive | ||||||||||||||
| T/T | 0 | (0.00) | 1 | (1.75) | 0.4831 | 0 | (0.00–8.41) | 0 | (0.00) | 0 | (0.00) | NA | NA | |
| C/T+C/C | 61 | (100.00) | 56 | (98.25) | – | 1.00 | 32 | (100.00) | 24 | (100.00) | – | – | ||
| Over-dominant | ||||||||||||||
| C/T | 20 | (32.79) | 13 | (22.81) | 0.3050 | 1.65 | (0.71–3.83) | 10 | (31.25) | 8 | (33.33) | >0.9999 | 0.91 | (0.28–2.59) |
| T/T+C/C | 41 | (67.21) | 44 | (77.19) | – | 1.00 | 22 | (68.75) | 16 | (66.67) | – | 1.00 | ||
| Genetic model | ||||||||||||||
| Co-dominant | ||||||||||||||
| A/A | 5 | (18.52) | 6 | (19.35) | >0.9999 | 0.95 | (0.27–3.26) | 3 | (20.00) | 2 | (20.00) | >0.9999 | 1.00 | (0.17–6.62) |
| G/G | 22 | (81.48) | 25 | (80.65) | – | 1.00 | 12 | (80.00) | 8 | (80.00) | – | 1.00 | ||
| G/A | 34 | (60.71) | 26 | (50.98) | 0.3354 | 1.49 | (0.70–3.25) | 17 | (58.62) | 14 | (63.64) | 0.7780 | 0.81 | (0.28–2.61) |
| G/G | 22 | (39.29) | 25 | (49.02) | – | 1.00 | 12 | (41.38) | 8 | (36.36) | – | 1.00 | ||
| Dominant | ||||||||||||||
| A/A+G/A | 39 | (63.93) | 32 | (56.14) | 0.4532 | 1.39 | (0.68–2.86) | 20 | (62.50) | 16 | (66.67) | 0.7853 | 0.83 | (0.30–2.51) |
| G/G | 22 | (36.07) | 25 | (43.86) | – | 1.00 | 12 | (37.50) | 8 | (33.33) | – | 1.00 | ||
| Recessive | ||||||||||||||
| A/A | 5 | (8.20) | 6 | (10.53) | 0.7570 | 0.76 | (0.24–2.83) | 3 | (9.37) | 2 | (8.33) | >0.9999 | 1.14 | (0.22–6.82) |
| G/A+G/G | 56 | (91.80) | 51 | (89.47) | – | 1.00 | 29 | (90.63) | 22 | (91.67) | – | 1.00 | ||
| Over-dominant | ||||||||||||||
| G/A | 34 | (55.74) | 26 | (45.61) | 0.3570 | 1.5 | (0.71–3.02) | 17 | (53.13) | 14 | (58.33) | 0.7889 | 0.81 | (0.28–2.26) |
| A/A+G/G | 27 | (44.26) | 31 | (54.39) | – | 1.00 | 15 | (46.87) | 10 | (41.67) | – | 1.00 | ||
| Genetic model | ||||||||||||||
| Co-dominant | ||||||||||||||
| C/C | 10 | (31.25) | 16 | (50.00) | 0.2028 | 0.46 | (0.17–1.29) | 7 | (36.84) | 3 | (25.00) | 0.6972 | 1.75 | (0.38–7.46) |
| A/A | 22 | (68.75) | 16 | (50.00) | – | 1.00 | 12 | (63.16) | 9 | (75.00) | 1.00 | |||
| A/C | 29 | (56.86) | 25 | (60.98) | 0.8316 | 0.84 | (0.36–1.90) | 13 | (52.00) | 12 | (57.14) | 0.7736 | 0.81 | (0.27–2.82) |
| A/A | 22 | (43.14) | 16 | (39.02) | – | 1.00 | 12 | (48.00) | 9 | (42.86) | – | 1.00 | ||
| Dominant | ||||||||||||||
| C/C+A/C | 39 | (63.93) | 41 | (71.93) | 0.4314 | 0.69 | (0.33–1.51) | 20 | (62.50) | 15 | (62.50) | >0.9999 | 1.00 | (0.32–2.96) |
| A/A | 22 | (36.07) | 16 | (28.07) | – | 1.00 | 12 | (37.50) | 9 | (37.50) | – | 1.00 | ||
| Recessive | ||||||||||||||
| C/C | 10 | (16.39) | 16 | (28.07) | 0.1819 | 0.50 | (0.20–1.23) | 7 | (21.87) | 3 | (12.50) | 0.4892 | 1.96 | (0.43–7.57) |
| A/C+A/A | 51 | (83.61) | 41 | (71.93) | – | 1.00 | 25 | (78.13) | 21 | (87.50) | – | 1.00 | ||
| Over-dominant | ||||||||||||||
| A/C | 29 | (47.54) | 25 | (43.86) | 0.7150 | 1.16 | (0.55–2.32) | 13 | (40.62) | 12 | (50.00) | 0.5899 | 0.68 | (0.24–1.93) |
| C/C+A/A | 32 | (52.46) | 32 | (56.14) | – | 1.00 | 19 | (59.38) | 12 | (50.00) | – | 1.00 | ||
| Genetic model | ||||||||||||||
| Co-dominant | ||||||||||||||
| G/G | 4 | (10.53) | 1 | (2.50) | 0.1948 | 4.59 | (0.69–57.36) | 3 | (13.64) | 1 | (6.25) | 0.6245 | 2.37 | (0.32–32.56) |
| A/A | 34 | (89.47) | 39 | (97.50) | – | 1.00 | 19 | (86.36) | 15 | (93.75) | – | 1.00 | ||
| A/G | 23 | (40.35) | 17 | (30.36) | 0.3265 | 1.55 | (0.72–3.26) | 10 | (34.48) | 8 | (34.78) | >0.9999 | 0.99 | (0.29–2.88) |
| A/A | 34 | (59.65) | 39 | (69.64) | – | 1.00 | 19 | (65.52) | 15 | (65.22) | – | 1.00 | ||
| Dominant | ||||||||||||||
| G/G+A/G | 27 | (44.26) | 18 | (31.58) | 0.1863 | 1.72 | (0.84–3.71) | 13 | (40.62) | 9 | (37.50) | >0.9999 | 1.14 | (0.39–3.56) |
| A/A | 34 | (55.74) | 39 | (68.42) | – | 1.00 | 19 | (59.38) | 15 | (62.50) | – | 1.00 | ||
| Recessive | ||||||||||||||
| G/G | 4 | (6.56) | 1 | (1.75) | 0.3657 | 3.93 | (0.61–48.83) | 3 | (9.37) | 1 | (4.17) | 0.6273 | 2.38 | (0.33–32.08) |
| A/G+A/A | 57 | (93.44) | 56 | (98.25) | – | 1.00 | 29 | (90.63) | 23 | (95.83) | – | 1.00 | ||
| Over-dominant | ||||||||||||||
| A/G | 23 | (37.70) | 17 | (29.82) | 0.4377 | 1.42 | (0.67–3.17) | 10 | (31.25) | 8 | (33.33) | >0.9999 | 0.91 | (0.28–2.59) |
| G/G+A/A | 38 | (62.30) | 40 | (70.18) | – | 1.00 | 22 | (68.75) | 16 | (66.67) | – | 1.00 | ||
χ2, chi-square value; 95% CI, 95% confidence interval; ASD, Autism spectrum disorder; df, degrees of freedom; OR, odds ratio; p, p value in two-sided Fisher’s exact test.