| Literature DB >> 31908401 |
Lei Xu1,2, Tingting Zhao1,2, Gangxiang Yuan3, Shengping Hou3, Wenxin Zeng1,2, Feilan Chen1,2.
Abstract
Purpose: The PRKCQ and REL genes are said to be associated with multiple autoimmune diseases. This study investigated the association between these genes and Vogt-Koyanagi-Harada (VKH) syndrome in Han Chinese.Entities:
Mesh:
Substances:
Year: 2019 PMID: 31908401 PMCID: PMC6925663
Source DB: PubMed Journal: Mol Vis ISSN: 1090-0535 Impact factor: 2.367
Clinical characteristics of the investigated VKH patients used for the first- and second-stage studies.
| Age at onset (years | 38.74±13.44 | | 41.96±14.21 | |
| Males | 327 | 54.50 | 148 | 57.1 |
| Females | 273 | 45.50 | 111 | 42.9 |
| Headache | 244 | 40.67 | 120 | 46.33 |
| Alopecia | 240 | 40.00 | 94 | 36.29 |
| Poliosis | 232 | 38.67 | 100 | 38.61 |
| Vitiligo | 106 | 17.67 | 48 | 18.53 |
| Tinnitus | 274 | 45.67 | 126 | 48.65 |
| Neck stiffness | 70 | 11.67 | 34 | 13.13 |
| Dysacusia | 188 | 31.33 | 101 | 38.40 |
| Scalp hypersensitivity | 94 | 15.67 | 40 | 15.44 |
Primers and restriction enzymes used for RFLP analysis of the PRKCQ and REL genes.
| rs4750316 | 5′-GGAAGAGCTGATAAGGGAAATGTC-3′
5′-TCCAGAAGGGCCAGAACACTA-3′ | ||
| | rs11258747 | 5′-GGGTCAATCTCCTTCCGTTCA-3′
5′-TGCTCTGCTCCCTTTCAGCTCTT −3′ | |
| | rs947474 | 5′-ACCAGTTATGAAGGGTGACAAAGA-3′
5′- GATCAAATACCAACTGCGTTGACT-3′ | |
| rs842647 | 5′-TGCTTGTCTCTGATTCTCTGGGTC-3′
5′-CTGGGCGACAAGTGTGAAACTC-3′ | ||
| | rs702873 | 5′-CAAAGCATCCTTCTTACTGGGTGT-3′
5′-AAGGCATTAGGAAGATTAGTGGTGTC-3′ | |
| rs13031237 | 5′-GAGTTGTTATGAGAGTAAAAGGCTGC-3′ 5′-AAGTACACAAGTTCTGCCTAGGGTAA-3′ |
RFLP-restriction fragment length polymorphism.
Frequencies of alleles and genotypes of PRKCQ and REL polymorphisms in VKH patients and controls in the first-stage study.
| rs4750316 | GG | 554 (92.33) | 842 (84.2) | | | Reference |
| | GC | 44 (7.33) | 153 (15.3) | 2.50e-6 | 6.00e-5 | 0.44 (0.31–0.62) |
| | CC | 2 (0.34) | 5 (0.5) | 0.55 | NS | 0.61 (0.12–3.14) |
| | G | 1152 (96.00) | 1837(91.85) | | | Reference |
| | C | 48 (4.00) | 163 (8.15) | 4.66e-6 | 1.12e-4 | 0.47 (0.34–0.65) |
| rs11258747 | GG | 549 (91.50) | 867 (86.7) | | | Reference |
| | GT | 49 (8.20) | 131 (13.1) | 0.0026 | NS | 0.59 (0.42–0.83) |
| | TT | 2 (0.30) | 2 (0.2) | 0.65 | NS | 1.58 (0.22–11.24) |
| | G | 1147 (95.60) | 1865 (93.30) | | | Reference |
| | T | 53 (4.40) | 135 (6.8) | 0.0066 | NS | 0.64 (0.46–0.88) |
| rs947474 | AA | 379(63.17) | 686 (68.60) | | | Reference |
| | AG | 204 (34.00) | 287 (28.70) | 0.024 | NS | 1.29 (1.03–1.60) |
| | GG | 17 (2.83) | 27 (2.70) | 0.68 | NS | 1.14 (0.61–2.12) |
| | A | 962 (80.17) | 1659 (82.95) | | | Reference |
| | G | 238 (19.83) | 341 (17.05) | 0.048 | NS | 1.20 (1.00–1.45) |
| rs842647 | GG | 456 (76.00) | 759 (75.90) | | | Reference |
| | GA | 135 (22.50) | 222 (22.20) | 0.92 | NS | 1.01 (0.79–1.29) |
| | AA | 9 (1.50) | 19 (1.90) | 0.56 | NS | 0.79 (0.35–1.76) |
| | G | 1047 (87.25) | 1740 (87.00) | | | Reference |
| | A | 153 (12.75) | 260 (13.00) | 0.84 | NS | 0.98 (0.79–1.21) |
| rs702873 | GG | 418 (69.67) | 732 (73.20) | | | Reference |
| | AG | 165 (27.50) | 241 (24.10) | 0.12 | NS | 1.20 (0.95–1.51) |
| | AA | 17 (2.83) | 27 (2.70) | 0.76 | NS | 1.10 (0.59–2.05) |
| | G | 1001 (83.42) | 1705 (85.25) | | | Reference |
| | A | 199 (16.58) | 295 (14.75) | 0.17 | NS | 1.15 (0.94–1.40) |
| rs13031237 | GG | 570 (95.00) | 962 (96.20) | | | Reference |
| | GT | 27 (4.50) | 38 (3.80) | 0.48 | NS | 1.20 (0.72–1.99) |
| | TT | 3 (0.50) | 0 (0) | 0.025 | NS | 2.69 (2.52–2.87) |
| | G | 1167 (97.25) | 1962 (98.10) | | | Reference |
| T | 33 (2.75) | 38 (1.90) | 0.11 | NS | 1.46 (0.91–2.34) |
Pc-Bonferroni-corrected p value; CI-confidence interval; OR-odds ratio; NS-not significant; SNP-single nucleotide polymorphism.
Frequencies of alleles and genotypes PRKCQ polymorphisms in patients and controls in the second stage and combined results
| rs4750316 | GG | 246 (94.98) | 451
(83.21) | | | | Reference |
| | GC | 12
(4.63) | 88
(16.24) | 3.23e-6 (OR=0.25, 95% CI= 0.13–0.47) | 7.75e-5 | 2.45e-10 | (OR=0.37, 95% CI= 0.28–0.51) |
| | CC | 1
(0.39) | 3
(0.55) | 0.67 (OR=0.61, 95% CI= 0.063–5.91) | NS | 0.47 | (OR=0.61, 95% CI= 0.16–2.30) |
| | G | 504 (97.30) | 990
(91.32) | | | | Reference |
| C | 14 (2.70) | 94 (8.67) | 8.32e-6 (OR=0.29, 95% CI= 0.16–0.52) | 0.0002 | 8.79e-10 | (OR=0.41, 95% CI= 0.31–0.55) | |
Pc-Bonferroni-corrected p value; CI-confidence interval; OR-odds ratio; NS-not significant; SNP-single nucleotide polymorphism.
Frequencies of alleles and genotypes of rs4750316/PRKCQ polymorphisms in patients with clinical findings and controls
| G | | 704 (96.70) | 2827 (91.66) | | | Reference |
| C | | 24 (3.30) | 257 (8.33) | 2.90e-6 | 6.96e-5 | 0.38 (0.25–0.57) |
| | | | | |||
| G | | 643 (96.26) | 2827 (91.67) | | | Reference |
| C | | 25 (3.74) | 257 (8.33) | 4.50e-5 | 0.0011 | 0.43 (0.28–0.65) |
| | | | | |||
| G | | 640 (96.39) | 2827 (91.67) | | | Reference |
| C | | 24 (3.61) | 257 (8.33) | 2.81e-5 | 6.74 e-4 | 0.41 (0.27–0.63) |
| | | | | |||
| G | | 769 (96.13) | 2827 (91.67) | | | Reference |
| C | | 31 (3.87) | 257 (8.33) | 1.80e-5 | 4.32e-4 | 0.44 (0.30–0.65) |
| | | | | |||
| G | | 554 (95.85) | 2827 (91.67) | | | Reference |
| C | 24 (4.15) | 257 (8.33) | 0.00053 | 0.013 | 0.48 (0.31–0.73) |
Pc-Bonferroni-corrected p value; CI-confidence interval; OR-odds ratio; NS-not significant.