| Literature DB >> 31906188 |
Mario Henrique Paziani1,2, Ludmilla Tonani Carvalho1, Marcia de Souza Carvalho Melhem3,4, Margarete Teresa Gottardo de Almeida5, Maria Emilia Nadaletto Bonifácio da Silva1, Roberto Martinez6, Cledir Santos2, Marcia Regina von Zeska Kress1.
Abstract
The aim of this study was to compare the performance of matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-TOF MS), phenotypic and molecular methods for the identification of Fusarium species complexes isolated from clinical cases in the State of Sao Paulo (Brazil) between the years 2001 and 2017. Sequencing of ITS region of ribosomal DNA and elongation factor 1 alpha gene (ET1α) were used as reference method in the analysis of a total of 108 Fusarium spp. clinical strains isolated from human hosts with superficial and systemic infections. Agreement between MALDI-TOF-MS and molecular data was observed for 97 out of 108 clinical isolates (89.8%), whereas five (4.6%) and six (5.5%) clinical isolates were misidentified and were not identified by MALDI-TOF MS, respectively. ITS region sequences and MALDI-TOF MS mass spectra identified and grouped correctly most of Fusarium clinical isolates at species complex level. This investigation highlights the potential of MALDI-TOF MS technique as a fast and cost-efficient alternative for clinical Fusarium identification. However, MALDI-TOF MS requires a more accurate and larger database. This work is the first comprehensive report for Fusarium population, based on phenotypic analyses, proteomic profile by MALDI-TOF and phylogenetic analyses of Fusarium species complexes isolated from clinical cases in the State of Sao Paulo, Brazil.Entities:
Keywords: Fusarium species; Fusarium species complex; MALDI-TOF MS; fusariosis; molecular identification
Year: 2019 PMID: 31906188 PMCID: PMC7022604 DOI: 10.3390/microorganisms8010066
Source DB: PubMed Journal: Microorganisms ISSN: 2076-2607
Molecular method (ITS and EF-1α sequencing) and MALDI-TOF MS identification of the 108 Fusarium spp. clinical isolates
| Method | FSSC | % | FOSC | % | FFSC | % | FDSC | % | No ID | % | Total | % |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Molecular | 97 | 89.8 | 9 | 8.3 | 1 | 0.9 | 1 | 0.9 | 0 | 0 | 108 | 100.0 |
| MALDI TOF MS | 93 | 86.1 | 7 | 6.5 | 1 | 0.9 | 1 | 0.9 | 6 | 5.6 | 108 | 100.0 |
FSSC: Fusarium solani species complex; FOSC: F. oxysporum species complex; FFSC: F. fujikuroi species complex; FDSC: F. dimerum species complex; No ID: no identification.
Figure 1Graphical summary of molecular (ITS and EF-1α) and matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-TOF MS) identification of Fusarium species complexes clinical isolates (n = 108). (A) ITS sequencing identification. (B) Fusarium species of FSSC (sequencing of EF-1α). (C) MALDI-TOF MS identification. FSSC: Fusarium solani species complex; FOSC: F. oxysporum species complex; FFSC: F. fujikuroi species complex; FDSC: F. dimerum species complex.
Figure 2Dendrogram based on concatenated sequences of ITS and EF-1α from 108 Fusarium spp. clinical isolates. In the tree nodes are the percentage of the bootstrap. Scale bar indicates nucleotide substitutions per site. FSSC: Fusarium solani species complex; FOSC: F. oxysporum species complex; FFSC: F. fujikuroi species complex; FDSC: F. dimerum species complex. Outgroup: Cylindrocarpon cylindroides strain CBS 324.61.
Figure 3Main MALDI-TOF mass spectra profiles for Fusarium species complexes. (A) FSSC strain spectrum (F. keratoplasticum—ATCC 36031); (B) FOSC strain spectrum (F. oxysporum—ATCC 48112); (C–G) FSSC clinical isolates spectra; (H–J) FOSC clinical isolates spectra; (K) FFSC clinical isolate spectrum; (L) FDSC clinical isolate spectrum. At the right of the panel is indicated the ID of each strain and/or clinical isolate. Spectra are presented in the range from 2000 to 10,000 Da, where the main mass peaks are observed.
Figure 4Phenotypic dendrogram based on MALDI-TOF MS spectra, obtained in the range from 2000 to 20,000, for Fusarium species complexes. Dendrogram of spectral similarity were obtained by agglomerative clustering algorithm with the software MALDI Biotyper Compass 4.1. C to G—mass spectra profiles of FSSC clinical isolates and control strain.