Literature DB >> 31895547

Pathway Complexity in Fuel-Driven DNA Nanostructures with Autonomous Reconfiguration of Multiple Dynamic Steady States.

Jie Deng1,2,3,4, Andreas Walther1,2,3,4.   

Abstract

We introduce pathway complexity on a multicomponent systems level in chemically fueled transient DNA polymerization systems, achieving autonomous evolution over multiple structural dynamic steady states from monomers to dimers, oligomers of dimers, and randomized polymer structures before being ultimately degraded back to monomers once the fuel is consumed. The enabling key principle is to design monomer species having kinetically selected molecular recognition in the structure-forming step and which are reconfigured in an enzymatic reaction network. This nonequilibrium systems chemistry approach to pathway complexity provides new conceptual insights into fuel-driven automatons and autonomous materials design.

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Year:  2020        PMID: 31895547      PMCID: PMC7612462          DOI: 10.1021/jacs.9b11598

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  33 in total

1.  Binding of nucleotides by T4 DNA ligase and T4 RNA ligase: optical absorbance and fluorescence studies.

Authors:  A V Cherepanov; S de Vries
Journal:  Biophys J       Date:  2001-12       Impact factor: 4.033

2.  Biocatalytic Feedback-Driven Temporal Programming of Self-Regulating Peptide Hydrogels.

Authors:  Thomas Heuser; Elisabeth Weyandt; Andreas Walther
Journal:  Angew Chem Int Ed Engl       Date:  2015-08-06       Impact factor: 15.336

Review 3.  Motor proteins at work for nanotechnology.

Authors:  Martin G L van den Heuvel; Cees Dekker
Journal:  Science       Date:  2007-07-20       Impact factor: 47.728

4.  Scaling up digital circuit computation with DNA strand displacement cascades.

Authors:  Lulu Qian; Erik Winfree
Journal:  Science       Date:  2011-06-03       Impact factor: 47.728

5.  Dissipative self-assembly of vesicular nanoreactors.

Authors:  Subhabrata Maiti; Ilaria Fortunati; Camilla Ferrante; Paolo Scrimin; Leonard J Prins
Journal:  Nat Chem       Date:  2016-05-02       Impact factor: 24.427

6.  Fuel-Selective Transient Activation of Nanosystems for Signal Generation.

Authors:  Flavio Della Sala; Subhabrata Maiti; Andrea Bonanni; Paolo Scrimin; Leonard J Prins
Journal:  Angew Chem Int Ed Engl       Date:  2018-01-12       Impact factor: 15.336

7.  Dynamic instability of microtubule growth.

Authors:  T Mitchison; M Kirschner
Journal:  Nature       Date:  1984 Nov 15-21       Impact factor: 49.962

8.  Periodically Self-Pulsating Microcapsule as Programmed Microseparator via ATP-Regulated Energy Dissipation.

Authors:  Xiang Hao; Liang Chen; Wei Sang; Qiang Yan
Journal:  Adv Sci (Weinh)       Date:  2018-01-04       Impact factor: 16.806

Review 9.  Fueling the Cell Division Cycle.

Authors:  María Salazar-Roa; Marcos Malumbres
Journal:  Trends Cell Biol       Date:  2016-10-13       Impact factor: 20.808

10.  Biomimetic temporal self-assembly via fuel-driven controlled supramolecular polymerization.

Authors:  Ananya Mishra; Divya B Korlepara; Mohit Kumar; Ankit Jain; Narendra Jonnalagadda; Karteek K Bejagam; Sundaram Balasubramanian; Subi J George
Journal:  Nat Commun       Date:  2018-03-30       Impact factor: 14.919

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  14 in total

Review 1.  Synthesis and characterization of chemically fueled supramolecular materials driven by carbodiimide-based fuels.

Authors:  Fabian Schnitter; Alexander M Bergmann; Benjamin Winkeljann; Jennifer Rodon Fores; Oliver Lieleg; Job Boekhoven
Journal:  Nat Protoc       Date:  2021-06-30       Impact factor: 13.491

2.  Programmable and Chemically Fueled DNA Coacervates by Transient Liquid-Liquid Phase Separation.

Authors:  Jie Deng; Andreas Walther
Journal:  Chem       Date:  2020-10-21       Impact factor: 22.804

Review 3.  Dissipative DNA nanotechnology.

Authors:  Erica Del Grosso; Elisa Franco; Leonard J Prins; Francesco Ricci
Journal:  Nat Chem       Date:  2022-06-06       Impact factor: 24.274

4.  Scalable One-Pot-Liquid-Phase Oligonucleotide Synthesis for Model Network Hydrogels.

Authors:  Guido Creusen; Cecilia Oluwadunsin Akintayo; Katja Schumann; Andreas Walther
Journal:  J Am Chem Soc       Date:  2020-09-16       Impact factor: 15.419

5.  Fuel-Driven Transient DNA Strand Displacement Circuitry with Self-Resetting Function.

Authors:  Jie Deng; Andreas Walther
Journal:  J Am Chem Soc       Date:  2020-12-02       Impact factor: 15.419

6.  Dissipative biocatalytic cascades and gated transient biocatalytic cascades driven by nucleic acid networks.

Authors:  Yu Ouyang; Pu Zhang; Itamar Willner
Journal:  Sci Adv       Date:  2022-05-06       Impact factor: 14.957

7.  Four-Dimensional Deoxyribonucleic Acid-Gold Nanoparticle Assemblies.

Authors:  Ming Luo; Mingjun Xuan; Shuaidong Huo; Jilin Fan; Gurudas Chakraborty; Yixi Wang; Hui Zhao; Andreas Herrmann; Lifei Zheng
Journal:  Angew Chem Int Ed Engl       Date:  2020-07-28       Impact factor: 15.336

8.  Spontaneous Reorganization of DNA-Based Polymers in Higher Ordered Structures Fueled by RNA.

Authors:  Serena Gentile; Erica Del Grosso; Passa E Pungchai; Elisa Franco; Leonard J Prins; Francesco Ricci
Journal:  J Am Chem Soc       Date:  2021-11-29       Impact factor: 15.419

9.  Molecular communication relays for dynamic cross-regulation of self-sorting fibrillar self-assemblies.

Authors:  Saskia Groeer; Katja Schumann; Sebastian Loescher; Andreas Walther
Journal:  Sci Adv       Date:  2021-11-24       Impact factor: 14.136

10.  ATP-powered molecular recognition to engineer transient multivalency and self-sorting 4D hierarchical systems.

Authors:  Jie Deng; Andreas Walther
Journal:  Nat Commun       Date:  2020-07-21       Impact factor: 14.919

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