Literature DB >> 35252623

Programmable and Chemically Fueled DNA Coacervates by Transient Liquid-Liquid Phase Separation.

Jie Deng1,2,3,4, Andreas Walther1,2,3,4.   

Abstract

Multivalency-driven liquid-liquid phase separation (LLPS) is essential in biomolecular condensates to facilitate spatiotemporal regulation of biological functions. Providing programmable model systems would help to better understand the LLPS processes in biology, and furnish new types of compartmentalized synthetic reaction crucibles that exploit biological principles. Herein, we demonstrate a concept for programming LLPS using transient multivalency between ATP-driven sequence-defined functionalized nucleic acid polymers (SfNAPs), which serve as simple models for membrane-less organelles. The ATP-driven SfNAPs are transiently formed by an enzymatic reaction network (ERN) of concurrent ATP-powered DNA ligation and DNA restriction. The lifetimes can be programmed by the ATP concentration, which manifests on the LLPS length scale in tunable lifetimes for the all-DNA coacervates. Critically, the prominent programmability of the DNA-based building blocks allows to encode distinct molecular recognitions for multiple multivalent systems, enabling sorted LLPS and thus multicomponent DNA coacervates, reminiscent of the diverse membraneless organelles in biological systems. The ATP-driven coacervates are capable for multivalent trapping of micron-scale colloids and biomolecules to generate functions as emphasized for rate enhancements in enzymatic cascades. This work supports ATP-driven multivalent coacervation as a valuable mechanism for dynamic multicomponent and function biomolecular condensate mimics and for autonomous materials design in general.

Entities:  

Keywords:  coacervates; liquid-liquid phase separation; multivalency; protocells; synthetic biology

Year:  2020        PMID: 35252623      PMCID: PMC7612463          DOI: 10.1016/j.chempr.2020.09.022

Source DB:  PubMed          Journal:  Chem            Impact factor:   22.804


  60 in total

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Authors:  Lise Schoonen; Jan C M van Hest
Journal:  Adv Mater       Date:  2015-10-28       Impact factor: 30.849

2.  Active liquid-like behavior of nucleoli determines their size and shape in Xenopus laevis oocytes.

Authors:  Clifford P Brangwynne; Timothy J Mitchison; Anthony A Hyman
Journal:  Proc Natl Acad Sci U S A       Date:  2011-02-28       Impact factor: 11.205

Review 3.  Dynamic Synthetic Cells Based on Liquid-Liquid Phase Separation.

Authors:  Nicolas Martin
Journal:  Chembiochem       Date:  2019-08-01       Impact factor: 3.164

4.  Peptide-nucleotide microdroplets as a step towards a membrane-free protocell model.

Authors:  Shogo Koga; David S Williams; Adam W Perriman; Stephen Mann
Journal:  Nat Chem       Date:  2011-08-07       Impact factor: 24.427

Review 5.  Viewpoint: From Responsive to Adaptive and Interactive Materials and Materials Systems: A Roadmap.

Authors:  Andreas Walther
Journal:  Adv Mater       Date:  2019-11-25       Impact factor: 30.849

6.  Function and Regulation of Phase-Separated Biological Condensates.

Authors:  Xiao-Han Li; Pavithra L Chavali; Rita Pancsa; Sreenivas Chavali; M Madan Babu
Journal:  Biochemistry       Date:  2018-02-12       Impact factor: 3.162

7.  Phase transitions in the assembly of multivalent signalling proteins.

Authors:  Pilong Li; Sudeep Banjade; Hui-Chun Cheng; Soyeon Kim; Baoyu Chen; Liang Guo; Marc Llaguno; Javoris V Hollingsworth; David S King; Salman F Banani; Paul S Russo; Qiu-Xing Jiang; B Tracy Nixon; Michael K Rosen
Journal:  Nature       Date:  2012-03-07       Impact factor: 49.962

8.  Phase transition of a disordered nuage protein generates environmentally responsive membraneless organelles.

Authors:  Timothy J Nott; Evangelia Petsalaki; Patrick Farber; Dylan Jervis; Eden Fussner; Anne Plochowietz; Timothy D Craggs; David P Bazett-Jones; Tony Pawson; Julie D Forman-Kay; Andrew J Baldwin
Journal:  Mol Cell       Date:  2015-03-05       Impact factor: 17.970

Review 9.  Biomolecular condensates: organizers of cellular biochemistry.

Authors:  Salman F Banani; Hyun O Lee; Anthony A Hyman; Michael K Rosen
Journal:  Nat Rev Mol Cell Biol       Date:  2017-02-22       Impact factor: 94.444

10.  Template-directed RNA polymerization and enhanced ribozyme catalysis inside membraneless compartments formed by coacervates.

Authors:  Raghav R Poudyal; Rebecca M Guth-Metzler; Andrew J Veenis; Erica A Frankel; Christine D Keating; Philip C Bevilacqua
Journal:  Nat Commun       Date:  2019-01-30       Impact factor: 14.919

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  8 in total

Review 1.  Dissipative DNA nanotechnology.

Authors:  Erica Del Grosso; Elisa Franco; Leonard J Prins; Francesco Ricci
Journal:  Nat Chem       Date:  2022-06-06       Impact factor: 24.274

2.  Signal-processing and adaptive prototissue formation in metabolic DNA protocells.

Authors:  Avik Samanta; Maximilian Hörner; Wei Liu; Wilfried Weber; Andreas Walther
Journal:  Nat Commun       Date:  2022-07-08       Impact factor: 17.694

3.  Fuel-driven macromolecular coacervation in complex coacervate core micelles.

Authors:  Reece W Lewis; Benjamin Klemm; Mariano Macchione; Rienk Eelkema
Journal:  Chem Sci       Date:  2022-03-31       Impact factor: 9.969

4.  Fuel-Driven Transient DNA Strand Displacement Circuitry with Self-Resetting Function.

Authors:  Jie Deng; Andreas Walther
Journal:  J Am Chem Soc       Date:  2020-12-02       Impact factor: 15.419

5.  Dissipative Organization of DNA Oligomers for Transient Catalytic Function.

Authors:  Jie Deng; Wei Liu; Mo Sun; Andreas Walther
Journal:  Angew Chem Int Ed Engl       Date:  2022-01-24       Impact factor: 16.823

6.  Spatiotemporal control of signal-driven enzymatic reaction in artificial cell-like polymersomes.

Authors:  Hanjin Seo; Hyomin Lee
Journal:  Nat Commun       Date:  2022-09-02       Impact factor: 17.694

7.  In situ Synthesis of Supramolecular Polymers: Finding the Right Conditions when Combining Covalent and Non-Covalent Synthesis.

Authors:  Tobias Schnitzer; S A H Jansen; Mathijs F J Mabesoone; Ghislaine Vantomme; E W Meijer
Journal:  Angew Chem Int Ed Engl       Date:  2022-07-14       Impact factor: 16.823

8.  Morphology control in crystalline nanoparticle-polymer aggregates.

Authors:  Tong Bian; Rafal Klajn
Journal:  Ann N Y Acad Sci       Date:  2021-08-24       Impact factor: 6.499

  8 in total

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