| Literature DB >> 31891238 |
Dirk J A Smit1, Danielle Cath2,3, Nuno R Zilhão4,5, Hill F Ip5, Damiaan Denys1, Anouk den Braber5,6, Eco J C de Geus5, Karin J H Verweij1, Jouke-Jan Hottenga5, Dorret I Boomsma5.
Abstract
We investigated whether obsessive-compulsive (OC) symptoms from a population-based sample could be analyzed to detect genetic variants influencing obsessive-compulsive disorder (OCD). We performed a genome-wide association studies (GWAS) on the obsession (rumination and impulsions) and compulsion (checking, washing, and ordering/precision) subscales of an abbreviated version of the Padua Inventory (N = 8,267 with genome-wide genotyping and phenotyping). The compulsion subscale showed a substantial and significant positive genetic correlation with an OCD case-control GWAS (r G = 0.61, p = .017) previously published by the Psychiatric Genomics Consortium (PGC-OCD). The obsession subscale and the total Padua score showed no significant genetic correlations (r G = -0.02 and r G = 0.42, respectively). A meta-analysis of the compulsive symptoms GWAS with the PGC-OCD revealed no genome-wide significant Single-Nucleotide Polymorphisms (SNPs combined N = 17,992, indicating that the power is still low for individual SNP effects). A gene-based association analysis, however, yielded two novel genes (WDR7 and ADCK1). The top 250 genes in the gene-based test also showed a significant increase in enrichment for psychiatric and brain-expressed genes. S-Predixcan testing showed that for genes expressed in hippocampus, amygdala, and caudate nucleus significance increased in the meta-analysis with compulsive symptoms compared to the original PGC-OCD GWAS. Thus, the inclusion of dimensional symptom data in genome-wide association on clinical case-control GWAS of OCD may be useful to find genes for OCD if the data are based on quantitative indices of compulsive behavior. SNP-level power increases were limited, but aggregate, gene-level analyses showed increased enrichment for brain-expressed genes related to psychiatric disorders, and increased association with gene expression in brain tissues with known emotional, reward processing, memory, and fear-formation functions.Entities:
Keywords: OCD; Padua Inventory-revised; gene expression; genome-wide association study (GWAS); obsessive-compulsive symptoms
Year: 2019 PMID: 31891238 PMCID: PMC7317414 DOI: 10.1002/ajmg.b.32777
Source DB: PubMed Journal: Am J Med Genet B Neuropsychiatr Genet ISSN: 1552-4841 Impact factor: 3.568
SNP‐based heritability of the Padua Inventory full‐scale score GWAS, the compulsions and obsessions subscales, and their genetic correlation with the PGC‐OCD GWAS
| Heritability | Genetic correlation with PGC‐OCD | |||||
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| Compulsions | 0.116 | 0.062 | 0.61 | 0.255 | 2.378 | .017 |
| Obsessions | 0.058 | 0.065 | −0.02 | 0.322 | −0.068 | .946 |
| Full scale | 0.102 | 0.060 | 0.42 | 0.254 | 1.672 | .095 |
Notes: SNP‐based heritabilities and genetic correlations were estimated using LD‐score regression.
Figure 1Q–Q plot of observed SNP p‐values against expected p‐values under the null. Black is the original PGC‐OCD GWAS, blue is the meta‐analysis of PGC‐OCD with compulsions. Dashed line is FDR q = 0.05 [Color figure can be viewed at wileyonlinelibrary.com]
Figure 2Q–Q plot of observed against expected p‐values under the null of the MAGMA gene‐based test. Dashed line is FDR q = 0.05. The meta‐analysis OCD + compulsion symptoms (blue) resulted in four significant discoveries, KIT, GRID2, WDR7, and ADCK1. The latter two are novel findings compared to the original PGC‐OCD GWAS (black) [Color figure can be viewed at wileyonlinelibrary.com]
Figure 3Enrichment results for the PGC‐OCD (black) and the OCD + compulsion symptoms meta‐analysis (orange). Enrichment of tissue‐specific differentially expressed genes (DEGs) was determined using the hypergeometric test. The y‐axis shows the Bonferroni corrected significance of the test as –log 10(p). The dashed line indicates the significance threshold (p = .05). Significance strongly increased for some brain tissues (over 1 point increase for ACC, amygdala, hippocampus and frontal cortex), and decreased for others (over 1 point decrease for cortex, substantia nigra) [Color figure can be viewed at wileyonlinelibrary.com]
Figure 4Significance of the enrichment of genes reported in psychiatric/behavioral GWASs, as found in the top 250 genes in the PGC‐OCD GWAS and the current meta‐analysis. Y‐axis shows Bonferroni corrected –log 10(p). Either equal significance or a strong increase in the effect was observed when meta‐analyzing OCD with compulsive symptoms. ASD, autism spectrum disorders; BIP, bipolar disorder; SCZ, schizophrenia; TS, Tourette's syndrome [Color figure can be viewed at wileyonlinelibrary.com]
Figure 5S‐Predixcan resulted in stronger p‐values after meta‐analyzing for the association of a gene's tissue expression with the phenotype. The figure shows the ratio of the p‐values of the meta‐analysis to the original GWAS (x‐axis), log‐transformed. This was performed for genes reaching a specific threshold (x‐axis) in the original GWAS. The difference in log p‐values for threshold 0.3–0.01, indicating stronger effects in the meta‐analysis. It also suggests that adding compulsive symptoms only strengthens top genetic expression effects in OCD. The average –log 10(p) difference across 10 brain tissues is shown. *p < .05, **p < .01, ***p < .001 [Color figure can be viewed at wileyonlinelibrary.com]