| Literature DB >> 31887993 |
Mingxun Li1,2, Qisong Gao1,2, Zhichen Tian1, Xubin Lu1,2, Yujia Sun2, Zhi Chen1,2, Huimin Zhang1,2, Yongjiang Mao1,2, Zhangping Yang1,2.
Abstract
Adipogenesis is a complicated but precisely orchestrated process mediated by a series of transcription factors. Our previous study has identified a novel long noncoding RNA (lncRNA) that was differentially expressed during bovine adipocyte differentiation. Because this lncRNA overlaps with miR-221 in the genome, it was named miR-221 host gene (MIR221HG). The purpose of this study was to clone the full length of MIR221HG, detect its subcellular localization, and determine the effects of MIR221HG on bovine adipocyte differentiation. The 5' rapid amplification of cDNA ends (RACE) and 3' RACE analyses demonstrated that MIR221HG is a transcript of 1064 nucleotides, is located on the bovine X chromosome, and contains a single exon. Bioinformatics analyses suggested that MIR221HG is an lncRNA and the promoter of MIR221HG includes the binding consensus sequences of the forkhead box C1 (FOXC1) and krüppel-like factor5 (KLF5). The semi-quantitative PCR and quantitative real-time PCR (qRT-PCR) of nuclear and cytoplasmic fractions revealed that MIR221HG mainly resides in the nucleus. Inhibition of MIR221HG significantly increased adipocyte differentiation, as indicated by a dramatic increment in the number of mature adipocytes and in the expression of the respective adipogenic markers, peroxisome proliferator-activated receptor γ (PPARγ), CCAAT/enhancer-binding protein α (C/EBPα), and fatty acid binding protein 4 (FABP4). Our results provide a basis for elucidating the mechanism by which MIR221HG regulates adipocyte differentiation.Entities:
Keywords: MIR221HG; adipocyte differentiation; long noncoding RNA; subcellular localization
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Year: 2019 PMID: 31887993 PMCID: PMC7016960 DOI: 10.3390/genes11010029
Source DB: PubMed Journal: Genes (Basel) ISSN: 2073-4425 Impact factor: 4.096
Figure 1long noncoding RNA miR-221 host gene (MIR221HG) is downregulated in adipocyte differentiation. (A) A scatter plot shows the correlation of lncRNA abundance between preadipocytes and adipocytes. The red dots represent the upregulated lncRNAs in adipocytes; the green dots represent the downregulated lncRNAs. (B) Validation of lncRNA MIR221HG. Total RNA of preadipocytes and adipocytes were respectively extracted, and qRT-PCR was conducted to verify the differential expression of MIR221HG. The data are presented as mean ± SE from three independent experiments. * p < 0.05.
Figure 2(A) The 5′ rapid amplification of cDNA ends (RACE) and 3′ RACE analyses illustrated that MIR221HG is a transcript of 1640 nucleotides with one single exon. (B) Genome structures of MIR221HG. Sequence conservation of MIR221HG was measured by multiple alignments of five vertebrate species using the UCSC Genome Browser. (C) The Coding Potential Calculator (CPC) program was used to evaluate the coding potential of MIR221HG, maternally expressed gene 9 (MEG9), and hypoxanthine phosphoribosyltransferase 1 (HPRT1), and both MIR221HG and MEG9 were predicted to be non-coding RNAs, while HPRT1 was identified to code for protein.
Figure 3Multiple forkhead box C1 (FOXC1) and krüppel-like factor5 (KLF5) putative binding sites are predicted in the MIR221HG promoter region. (A) Predicted FOXC1 and KLF5 binding sites within a 2000-bp region of the MIR221HG promoter. (B) FOXC1 binding motif sequence logo from JASPAR. (C) KLF5 binding motif sequence logo from JASPAR.
Figure 4MIR221HG is a nucleus lncRNA. (A,B) MIR221HG in cytoplasmic (Cyto) and nuclear (Nuc) fractions of preadipocytes and adipocytes was determined by semi-quantitative PCR (A) and qRT-PCR (B). Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) was used as markers for the cytoplasmic fraction. The data are representatives of three independent experiments.
Figure 5Inhibition of MIR221HG promotes bovine adipocyte differentiation. (A) Interference efficiencies of MIR221HG-specific short interfering RNAs (siRNAs). siRNAs were transfected into preadipocytes. Forty-eight hours after transfection, total RNA was isolated and the expression levels of MIR221HG were detected by qRT-PCR. (B,C) siRNA1-mediated downregulation of MIR221HG promotes the expression of adipogenic markers peroxisome proliferator-activated receptor γ (PPARγ), CCAAT/enhancer-binding protein α (C/EBPα), and fatty acid binding protein 4 (FABP4) at both mRNA (B) and protein (C) levels. The data are presented as mean ± SE from three independent experiments. * p < 0.05; ** p < 0.01; *** p < 0.001.