Literature DB >> 31846581

77Se NMR Probes the Protein Environment of Selenomethionine.

Qingqing Chen1, Shiping Xu1, Xingyu Lu1,2, Michael V Boeri1,3, Yuliya Pepelyayeva1,4, Elizabeth L Diaz1, Sunil-Datta Soni3, Marc Allaire5, Martin B Forstner1, Brian J Bahnson1, Sharon Rozovsky1.   

Abstract

Sulfur is critical for the correct structure and proper function of proteins. Yet, lacking a sensitive enough isotope, nuclear magnetic resonance (NMR) experiments are unable to deliver for sulfur in proteins the usual wealth of chemical, dynamic, and structural information. This limitation can be circumvented by substituting sulfur with selenium, which has similar physicochemical properties and minimal impact on protein structures but possesses an NMR compatible isotope (77Se). Here we exploit the sensitivity of 77Se NMR to the nucleus' chemical milieu and use selenomethionine as a probe for its proteinaceous environment. However, such selenium NMR spectra of proteins currently resist a reliable interpretation because systematic connections between variations of system variables and changes in 77Se NMR parameters are still lacking. To start narrowing this knowledge gap, we report here on a biological 77Se magnetic resonance data bank based on a systematically designed library of GB1 variants in which a single selenomethionine was introduced at different locations within the protein. We recorded the resulting isotropic 77Se chemical shifts and relaxation times for six GB1 variants by solution-state 77Se NMR. For four of the GB1 variants we were also able to determine the chemical shift anisotropy tensor of SeM by solid-state 77Se NMR. To enable interpretation of the NMR data, the structures of five of the GB1 variants were solved by X-ray crystallography to a resolution of 1.2 Å, allowing us to unambiguously determine the conformation of the selenomethionine. Finally, we combine our solution- and solid-state NMR data with the structural information to arrive at general insights regarding the execution and interpretation of 77Se NMR experiments that exploit selenomethionine to probe proteins.

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Year:  2020        PMID: 31846581      PMCID: PMC8088340          DOI: 10.1021/acs.jpcb.9b07466

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  38 in total

Review 1.  Chemical shift tensor - the heart of NMR: Insights into biological aspects of proteins.

Authors:  Hazime Saitô; Isao Ando; Ayyalusamy Ramamoorthy
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2010-05-07       Impact factor: 9.795

2.  Spectroscopic Evidences for Strong Hydrogen Bonds with Selenomethionine in Proteins.

Authors:  V Rao Mundlapati; Dipak Kumar Sahoo; Sanat Ghosh; Umesh Kumar Purame; Shubhant Pandey; Rudresh Acharya; Nitish Pal; Prince Tiwari; Himansu S Biswal
Journal:  J Phys Chem Lett       Date:  2017-02-02       Impact factor: 6.475

Review 3.  Methionine in Proteins: It's Not Just for Protein Initiation Anymore.

Authors:  Jung Mi Lim; Geumsoo Kim; Rodney L Levine
Journal:  Neurochem Res       Date:  2018-01-11       Impact factor: 3.996

4.  A thermodynamic scale for the beta-sheet forming tendencies of the amino acids.

Authors:  C K Smith; J M Withka; L Regan
Journal:  Biochemistry       Date:  1994-05-10       Impact factor: 3.162

5.  Selenoprotein K knockout mice exhibit deficient calcium flux in immune cells and impaired immune responses.

Authors:  Saguna Verma; FuKun W Hoffmann; Mukesh Kumar; Zhi Huang; Kelsey Roe; Elizabeth Nguyen-Wu; Ann S Hashimoto; Peter R Hoffmann
Journal:  J Immunol       Date:  2011-01-10       Impact factor: 5.422

6.  77Se NMR characterization of 77Se-labeled ovine erythrocyte glutathione peroxidase.

Authors:  P Gettins; B C Crews
Journal:  J Biol Chem       Date:  1991-03-15       Impact factor: 5.157

7.  A Survey of the Role of Noncovalent Sulfur Interactions in Drug Design.

Authors:  Brett R Beno; Kap-Sun Yeung; Michael D Bartberger; Lewis D Pennington; Nicholas A Meanwell
Journal:  J Med Chem       Date:  2015-03-03       Impact factor: 7.446

8.  Selenomethionine Quenching of Tryptophan Fluorescence Provides a Simple Probe of Protein Structure.

Authors:  Matthew D Watson; Ivan Peran; Junjie Zou; Osman Bilsel; Daniel P Raleigh
Journal:  Biochemistry       Date:  2017-02-16       Impact factor: 3.162

9.  Crystal polymorphism of protein GB1 examined by solid-state NMR spectroscopy and X-ray diffraction.

Authors:  Heather L Frericks Schmidt; Lindsay J Sperling; Yi Gui Gao; Benjamin J Wylie; John M Boettcher; Scott R Wilson; Chad M Rienstra
Journal:  J Phys Chem B       Date:  2007-12-04       Impact factor: 2.991

10.  Site-Specific Internal Motions in GB1 Protein Microcrystals Revealed by 3D ²H-¹³C-¹³C Solid-State NMR Spectroscopy.

Authors:  Xiangyan Shi; Chad M Rienstra
Journal:  J Am Chem Soc       Date:  2016-03-18       Impact factor: 15.419

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  1 in total

1.  77Se-13C based dipolar correlation experiments to map selenium sites in microcrystalline proteins.

Authors:  Caitlin M Quinn; Shiping Xu; Guangjin Hou; Qingqing Chen; Deepak Sail; R Andrew Byrd; Sharon Rozovsky
Journal:  J Biomol NMR       Date:  2022-03-23       Impact factor: 2.582

  1 in total

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