| Literature DB >> 31842857 |
Amir Keshavarzi1, Mohammad Mahdi Eftekharian2, Alireza Komaki2, Mir Davood Omrani3, Vahid Kholghi Oskooei4, Mohammad Taheri5, Soudeh Ghafouri-Fard6.
Abstract
BACKGROUND: Proteins encoded by Suppressors of cytokine signaling (SOCS) genes have critical roles in the regulation of immune responses. Meanwhile, several lines of evidence support the presence of immune dysfunction in bipolar disorder (BD) patients.Entities:
Keywords: Bipolar disease; Expression; Suppressors of cytokine signaling
Mesh:
Substances:
Year: 2019 PMID: 31842857 PMCID: PMC6915962 DOI: 10.1186/s12888-019-2396-9
Source DB: PubMed Journal: BMC Psychiatry ISSN: 1471-244X Impact factor: 3.630
Nucleotide sequences of primers and probes used for expression analysis
| Gene name | Primer and probe sequence | Primer and probe length | Product length |
|---|---|---|---|
| F: AGCCTAAGATGAGAGTTC | 18 | 88 | |
| R: CACAGAACTAGAACATTGATA | 21 | ||
| FAM -CATCTGGAGTCCTATTGACATCGC- TAMRA | 24 | ||
| F: TGGCCCCTTCTGTAGGATGG | 20 | 109 | |
| R: GGAGGAGGAAGAGGAGGAAGG | 21 | ||
| FAM- TGGCCCCTTCTGTAGGATGG- TAMRA | 20 | ||
| F: ACGCGAACCCTTCTCTGACC | 20 | 99 | |
| R: CATTCCCGGAGGGCTCAAGG | 20 | ||
| FAM -CTCGGGCGGCCACCTGTCTTTGC-TAMRA | 23 | ||
| F: GTGGAGAGGCTGAGGGACTC | 20 | 111 | |
| R: GGCTGACATTCCCAGTGCTC | 20 | ||
| FAM- CACCAAGCCAGCCCACAGCCAGG- TAMRA | 23 | ||
| F: GTGACTCGGAAGAGGATACAACC | 23 | 91 | |
| R: CTAACATGGGTATGGCTGTCTCC | 23 | ||
| FAM- CGCTGCTTCTGCCTCCGTGACTGC- TAMRA | 24 |
General information of study participants
| Study groups | Parameters | Values | |
|---|---|---|---|
| Case | Gender | Male | 35 |
| Female | 15 | ||
| Age (mean ± SD (range)) | 36.5 ± 9.32 (17–56) | ||
| Age at onset (mean ± SD (range)) | 32.64 ± 8.04 (15–48) | ||
| Disease duration (mean ± SD (range)) | 3.86 ± 2.66 (1–14) | ||
| Control | Gender | Male | 35 |
| Female | 15 | ||
| Age (mean ± SD (range)) | 33.62 ± 8.59 (14–52) | ||
Fig. 1Relative expression of SOCS genes in patients and controls as demonstrated by –delta CT values (CT reference gene- CT target gene)
Relative expression of SOCS genes in BD patients compared with controls
| Genes | Parameters | Total patients vs. total controls (50 vs. 50) | Male patients vs. male controls (35 vs. 35) | Female patients vs. female controls (15 vs. 15) |
|---|---|---|---|---|
| Expression ratio | 2.07 | 4.43 | 0.61 | |
| 0.005 | < 0.001 | 0.14 | ||
| Expression ratio | 3.85 | 8 | 1.21 | |
| < 0.001 | < 0.001 | 0.47 | ||
| Expression ratio | 2.7 | 4.82 | 1.19 | |
| < 0.001 | < 0.001 | 0.61 | ||
| Expression ratio | 5.77 | 8.77 | 3.81 | |
| < 0.001 | < 0.001 | 0.001 |
Partial correlation analysis between expression levels of genes and clinical data (controlled for gender)
| R | R | R | R | ||||||
|---|---|---|---|---|---|---|---|---|---|
| Case | Age | 0.14 | 0.15 | 0.06 | 0.33 | 0.09 | 0.26 | 0.02 | 0.44 |
| Age at onset | 0.18 | 0.09 | 0.09 | 0.25 | 0.13 | 0.18 | 0.05 | 0.34 | |
| Disease duration | - 0.05 | 0.35 | - 0.07 | 0.31 | - 0.08 | 0.29 | - 0.1 | 0.24 | |
| Control | Age | - 0.04 | 0.38 | 0.19 | 0.08 | 0.1 | 0.23 | 0.06 | 0.33 |
Pairwise correlation between expression levels of genes (R2 values are shown. *: Correlation is significant at P < 0.05 level, **: Correlation is significant at P < 0.01 level)
| Controls | 0.43** | 0.46** | 0.6** | |
| Patients | 0.28** | 0. 17* | 0.34** | |
| Controls | 0.51** | 0.59** | ||
| Patients | 0.67** | 0.47** | ||
| Controls | 0.47** | |||
| Patients | 0.58** | |||
The results of ROC curve analysis (a: Youden index, b: Significance Level P (Area = 0.5), Estimate criterion: optimal cut-off point for gene expression)
| Estimate criterion | AUC | Ja | Sensitivity | Specificity | ||
|---|---|---|---|---|---|---|
| ≤ 1.5 | 0.65 | 0.26 | 62 | 64 | 0.005 | |
| ≤ 1.3 | 0.78 | 0.46 | 84 | 62 | < 0.0001 | |
| ≤ 1.3 | 0.72 | 0.32 | 72 | 60 | < 0.0001 | |
| ≤ 0.3 | 0.92 | 0.74 | 90 | 84 | < 0.0001 | |
| Combination of four genes | > 0.54 | 0.93 | 0.8 | 88 | 92 | < 0.0001 |
Fig. 2The results of ROC curve analysis for assessment of diagnostic power of SOCS genes in BD