Literature DB >> 31839260

Modulation of Structural Heterogeneity Controls Phytochrome Photoswitching.

Emil Gustavsson1, Linnéa Isaksson1, Cecilia Persson2, Maxim Mayzel2, Ulrika Brath2, Lidija Vrhovac1, Janne A Ihalainen3, B Göran Karlsson4, Vladislav Orekhov4, Sebastian Westenhoff5.   

Abstract

Phytochromes sense red/far-red light and control many biological processes in plants, fungi, and bacteria. Although the crystal structures of dark- and light-adapted states have been determined, the molecular mechanisms underlying photoactivation remain elusive. Here, we demonstrate that the conserved tongue region of the PHY domain of a 57-kDa photosensory module of Deinococcus radiodurans phytochrome changes from a structurally heterogeneous dark state to an ordered, light-activated state. The results were obtained in solution by utilizing a laser-triggered activation approach detected on the atomic level with high-resolution protein NMR spectroscopy. The data suggest that photosignaling of phytochromes relies on careful modulation of structural heterogeneity of the PHY tongue.
Copyright © 2019 Biophysical Society. Published by Elsevier Inc. All rights reserved.

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Year:  2019        PMID: 31839260      PMCID: PMC6976809          DOI: 10.1016/j.bpj.2019.11.025

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  39 in total

Review 1.  Phytochrome photosensory signalling networks.

Authors:  Peter H Quail
Journal:  Nat Rev Mol Cell Biol       Date:  2002-02       Impact factor: 94.444

Review 2.  Phytochrome structure and signaling mechanisms.

Authors:  Nathan C Rockwell; Yi-Shin Su; J Clark Lagarias
Journal:  Annu Rev Plant Biol       Date:  2006       Impact factor: 26.379

3.  Two ground state isoforms and a chromophore D-ring photoflip triggering extensive intramolecular changes in a canonical phytochrome.

Authors:  Chen Song; Georgios Psakis; Christina Lang; Jo Mailliet; Wolfgang Gärtner; Jon Hughes; Jörg Matysik
Journal:  Proc Natl Acad Sci U S A       Date:  2011-02-15       Impact factor: 11.205

4.  A cyanobacterial phytochrome two-component light sensory system.

Authors:  K C Yeh; S H Wu; J T Murphy; J C Lagarias
Journal:  Science       Date:  1997-09-05       Impact factor: 47.728

5.  Extensive remodeling of a cyanobacterial photosynthetic apparatus in far-red light.

Authors:  Fei Gan; Shuyi Zhang; Nathan C Rockwell; Shelley S Martin; J Clark Lagarias; Donald A Bryant
Journal:  Science       Date:  2014-08-21       Impact factor: 47.728

6.  Correlating structural and photochemical heterogeneity in cyanobacteriochrome NpR6012g4.

Authors:  Sunghyuk Lim; Qinhong Yu; Sean M Gottlieb; Che-Wei Chang; Nathan C Rockwell; Shelley S Martin; Dorte Madsen; J Clark Lagarias; Delmar S Larsen; James B Ames
Journal:  Proc Natl Acad Sci U S A       Date:  2018-04-09       Impact factor: 11.205

7.  The CCPN data model for NMR spectroscopy: development of a software pipeline.

Authors:  Wim F Vranken; Wayne Boucher; Tim J Stevens; Rasmus H Fogh; Anne Pajon; Miguel Llinas; Eldon L Ulrich; John L Markley; John Ionides; Ernest D Laue
Journal:  Proteins       Date:  2005-06-01

8.  CSI 3.0: a web server for identifying secondary and super-secondary structure in proteins using NMR chemical shifts.

Authors:  Noor E Hafsa; David Arndt; David S Wishart
Journal:  Nucleic Acids Res       Date:  2015-05-15       Impact factor: 16.971

9.  Highly efficient NMR assignment of intrinsically disordered proteins: application to B- and T cell receptor domains.

Authors:  Linnéa Isaksson; Maxim Mayzel; Maria Saline; Anders Pedersen; Joakim Rosenlöw; Bernhard Brutscher; B Göran Karlsson; Vladislav Y Orekhov
Journal:  PLoS One       Date:  2013-05-07       Impact factor: 3.240

10.  The room temperature crystal structure of a bacterial phytochrome determined by serial femtosecond crystallography.

Authors:  Petra Edlund; Heikki Takala; Elin Claesson; Léocadie Henry; Robert Dods; Heli Lehtivuori; Matthijs Panman; Kanupriya Pande; Thomas White; Takanori Nakane; Oskar Berntsson; Emil Gustavsson; Petra Båth; Vaibhav Modi; Shatabdi Roy-Chowdhury; James Zook; Peter Berntsen; Suraj Pandey; Ishwor Poudyal; Jason Tenboer; Christopher Kupitz; Anton Barty; Petra Fromme; Jake D Koralek; Tomoyuki Tanaka; John Spence; Mengning Liang; Mark S Hunter; Sebastien Boutet; Eriko Nango; Keith Moffat; Gerrit Groenhof; Janne Ihalainen; Emina A Stojković; Marius Schmidt; Sebastian Westenhoff
Journal:  Sci Rep       Date:  2016-10-19       Impact factor: 4.379

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  5 in total

1.  Structural insights into photoactivation and signalling in plant phytochromes.

Authors:  Soshichiro Nagano; Kaoling Guan; Sintayehu Manaye Shenkutie; Christian Feiler; Manfred Weiss; Anastasia Kraskov; David Buhrke; Peter Hildebrandt; Jon Hughes
Journal:  Nat Plants       Date:  2020-05-04       Impact factor: 15.793

2.  Light- and pH-dependent structural changes in cyanobacteriochrome AnPixJg2.

Authors:  Susanne Altmayer; Lisa Köhler; Pavlo Bielytskyi; Wolfgang Gärtner; Jörg Matysik; Christian Wiebeler; Chen Song
Journal:  Photochem Photobiol Sci       Date:  2022-04-08       Impact factor: 3.982

3.  The structural effect between the output module and chromophore-binding domain is a two-way street via the hairpin extension.

Authors:  Moona Kurttila; Stefan Etzl; Jessica Rumfeldt; Heikki Takala; Nadine Galler; Andreas Winkler; Janne A Ihalainen
Journal:  Photochem Photobiol Sci       Date:  2022-08-19       Impact factor: 4.328

4.  High-resolution crystal structures of transient intermediates in the phytochrome photocycle.

Authors:  Melissa Carrillo; Suraj Pandey; Juan Sanchez; Moraima Noda; Ishwor Poudyal; Luis Aldama; Tek Narsingh Malla; Elin Claesson; Weixiao Yuan Wahlgren; Denisse Feliz; Vukica Šrajer; Michał Maj; Leticia Castillon; So Iwata; Eriko Nango; Rie Tanaka; Tomoyuki Tanaka; Luo Fangjia; Kensuke Tono; Shigeki Owada; Sebastian Westenhoff; Emina A Stojković; Marius Schmidt
Journal:  Structure       Date:  2021-03-22       Impact factor: 5.006

5.  The primary structural photoresponse of phytochrome proteins captured by a femtosecond X-ray laser.

Authors:  Elin Claesson; Weixiao Yuan Wahlgren; Heikki Takala; Suraj Pandey; Leticia Castillon; Valentyna Kuznetsova; Léocadie Henry; Matthijs Panman; Melissa Carrillo; Joachim Kübel; Rahul Nanekar; Linnéa Isaksson; Amke Nimmrich; Andrea Cellini; Dmitry Morozov; Michał Maj; Moona Kurttila; Robert Bosman; Eriko Nango; Rie Tanaka; Tomoyuki Tanaka; Luo Fangjia; So Iwata; Shigeki Owada; Keith Moffat; Gerrit Groenhof; Emina A Stojković; Janne A Ihalainen; Marius Schmidt; Sebastian Westenhoff
Journal:  Elife       Date:  2020-03-31       Impact factor: 8.140

  5 in total

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