| Literature DB >> 31815624 |
Zhixian Yao1, Zhong Zheng1, Wu Ke1, Renjie Wang1, Xingyu Mu1, Feng Sun1, Xiang Wang1, Shivank Garg2, Wenyin Shi3, Yinyan He4, Zhihong Liu5.
Abstract
BACKGROUND: This study aimed to establish and validate a nomogram for predicting brain metastasis in patients with bladder cancer (BCa) and assess various treatment modalities using a primary cohort comprising 234 patients with clinicopathologically-confirmed BCa from 2004 to 2015 in the National Cancer Database.Entities:
Keywords: Bladder cancer; Brain metastasis; Machine learning; Nomogram; Overall survival
Year: 2019 PMID: 31815624 PMCID: PMC6902467 DOI: 10.1186/s12967-019-2109-7
Source DB: PubMed Journal: J Transl Med ISSN: 1479-5876 Impact factor: 5.531
Description of clinical characteristics and their values
| Clinical variables | Description | Values |
|---|---|---|
| Age | Age of the patient at diagnosis | < 65 years or ≥ 65 years |
| Sex | The gender of the patient | Male or female |
| Race | The primary race of the person | White, black or others |
| Grade | Describes the tumor’s resemblance to normal tissue (coded according to ICD-O-3) | Well differentiated, poorly differentiated or Unknown |
| Tumor_Stage | NCDB analytic stage identifies the clinically or pathologically determined size and/or extension of the primary tumor (cT) as defined by the American Joint Committee on Cancer (AJCC) | High (Stage III, IV) or low (Stage I, II) |
| Lymph_nodes | Identifies the clinically-determined absence or presence of regional lymph node metastasis and describes the corresponding extent as defined by the American Joint Committee on Cancer (AJCC) | Yes, no or unknown |
| Histology | Indicate the pathological histology of tumor cells (coded according to ICD-O-3) | Transitional cell carcinoma, papillary urothelial carcinoma, small cell carcinoma or others |
| Lymph_Vas_invasion | Indicate the presence or absence of tumor cells in lymphatic channels (other than lymph nodes) or blood vessels within the primary tumor as noted microscopically by the pathologist | Yes, no or unknown |
| Met_Bone | Indicate the presence of distant involvement of bone at the time of diagnosis | Yes or no |
| Met_Liver | Indicate the presence of distant involvement of liver at the time of diagnosis | Yes or no |
| Met_Lung | Indicate the presence of distant involvement of lung at the time of diagnosis | Yes or no |
| Surgery_Primary | Records the surgical procedure and approach performed to the primary site | Minimal invasive surgery, non-minimal invasive surgery or no surgery |
| Chemotherapy | Records of chemotherapy administrated as first course treatment | Yes or no |
| Radiation_Therapy | Anatomic target volume is directed at tumors lying within the substance of brain or its meninges | Yes or no |
| Paliative_Care | Any care provided an effort to palliate or alleviate symptoms | Yes or no |
| Brain_Confined_Met | Indicate the presence of distant involvement of brain only or brian combined with other organs at the time of diagnosis | Brain confined or non-brain confined |
| CDCC_Score | Charlson/Deyo Score, a weighted score derived from the sum of the scores for each of the comorbid conditions listed in the Charlson Comorbidity Score Mapping Table (source | 0–3 |
| Surgery_Met | Records the surgical removal of distant lymph nodes or other tissues or organs beyond the primary site | Yes or no |
Fig. 1Flowchart of the analysis
Baseline characteristics and distribution of risk stratification of patients in the training and validation cohorts
| Characteristics | Training set (%) | Internal testing set (%) | ||||
|---|---|---|---|---|---|---|
| Number of cases | High risk | Low risk | Number of cases | High risk | Low risk | |
| Age | ||||||
| < 65 years | 71 (42) | 32 (18.9) | 39 (23.1) | 22 (33.8) | 11 (16.9) | 11 (16.9) |
| ≥ 65 years | 98 (58) | 49 (29) | 49 (29) | 43 (66.2) | 21 (32.3) | 22 (33.8) |
| Sex | ||||||
| Male | 128 (75.7) | 63 (37.3) | 65 (38.5) | 47 (72.3) | 19 (29.2) | 28 (43.1) |
| Female | 41 (24.3) | 18 (10.7) | 23 (13.6) | 18 (27.7) | 13 (20) | 5 (7.7) |
| Race | ||||||
| White | 148 (87.6) | 70 (41.4) | 78 (46.2) | 59 (90.8) | 29 (44.6) | 30 (46.2) |
| Black | 16 (9.5) | 8 (4.7) | 8 (4.7) | 4 (6.2) | 3 (4.6) | 1 (1.5) |
| Others | 5 (3) | 3 (1.8) | 2 (1.2) | 2 (3.1) | 0 (0) | 2 (3.1) |
| Grade | ||||||
| Well differentiated | 14 (8.3) | 10 (5.9) | 4 (2.4) | 1 (1.5) | 0 (0) | 1 (1.5) |
| Poorly differentiated | 96 (56.8) | 39 (23.1) | 57 (33.7) | 39 (60) | 19 (29.2) | 20 (30.8) |
| Unknown | 59 (34.9) | 32 (18.9) | 27 (16) | 25 (38.5) | 13 (20) | 12 (18.5) |
| Histology | ||||||
| TCC | 94 (55.6) | 49 (29) | 45 (26.6) | 38 (58.5) | 17 (26.2) | 21 (32.3) |
| PUC | 42 (24.9) | 15 (8.9) | 27 (16) | 8 (12.3) | 5 (7.7) | 3 (4.6) |
| SCC | 10 (5.9) | 3 (1.8) | 7 (4.1) | 7 (10.8) | 2 (3.1) | 5 (7.7) |
| Others | 23 (13.6) | 14 (8.3) | 9 (5.3) | 12 (18.5) | 8 (12.3) | 4 (6.2) |
| Tumor_Stage | ||||||
| Low | 13 (7.7) | 7 (4.1) | 6 (3.6) | 4 (6.2) | 2 (3.1) | 2 (3.1) |
| High | 156 (92.3) | 74 (43.8) | 82 (48.5) | 61 (93.8) | 30 (46.2) | 31 (47.7) |
| Lymph_nodes | ||||||
| No | 87 (51.5) | 39 (23.1) | 48 (28.4) | 33 (50.8) | 16 (24.6) | 17 (26.2) |
| Yes | 36 (21.3) | 14 (8.3) | 22 (13) | 17 (26.2) | 9 (13.8) | 8 (12.3) |
| Unknown | 46 (27.2) | 28 (16.6) | 18 (10.7) | 15 (23.1) | 7 (10.8) | 8 (12.3) |
| Lymph_Vas_Invasion | ||||||
| No | 31 (18.3) | 12 (7.1) | 19 (11.2) | 12 (18.5) | 5 (7.7) | 7 (10.8) |
| Yes | 29 (17.2) | 13 (7.7) | 16 (9.5) | 6 (9.2) | 3 (4.6) | 3 (4.6) |
| Unknown | 109 (64.5) | 56 (33.1) | 53 (31.4) | 47 (72.3) | 24 (36.9) | 23 (35.4) |
| Met_Bone | ||||||
| No | 112 (66.3) | 47 (27.8) | 65 (38.5) | 44 (67.7) | 26 (40) | 18 (27.7) |
| Yes | 57 (33.7) | 34 (20.1) | 23 (13.6) | 21 (32.3) | 6 (9.2) | 15 (23.1) |
| Met_Liver | ||||||
| No | 129 (76.3) | 61 (36.1) | 68 (40.2) | 50 (76.9) | 25 (38.5) | 25 (38.5) |
| Yes | 40 (23.7) | 20 (11.8) | 20 (11.8) | 15 (23.1) | 7 (10.8) | 8 (12.3) |
| Met_Lung | ||||||
| No | 100 (59.2) | 40 (23.7) | 60 (35.5) | 34 (52.3) | 16 (24.6) | 18 (27.7) |
| Yes | 69 (40.8) | 41 (24.3) | 28 (16.6) | 31 (47.7) | 16 (24.6) | 15 (23.1) |
| Surgery_Primary | ||||||
| Minimal invasive | 65 (38.5) | 27 (16) | 38 (22.5) | 31 (47.7) | 19 (29.2) | 12 (18.5) |
| No | 83 (49.1) | 48 (28.4) | 35 (20.7) | 29 (44.6) | 9 (13.8) | 20 (30.8) |
| Non-minimal invasive | 21 (12.4) | 6 (3.6) | 15 (8.9) | 5 (7.7) | 4 (6.2) | 1 (1.5) |
| Chemotherapy | ||||||
| No | 97 (57.4) | 77 (45.6) | 20 (11.8) | 36 (55.4) | 28 (43.1) | 8 (12.3) |
| Yes | 72 (42.6) | 4 (2.4) | 68 (40.2) | 29 (44.6) | 4 (6.2) | 25 (38.5) |
| Radiation_Therapy | ||||||
| No | 89 (52.7) | 50 (29.6) | 39 (23.1) | 38 (58.5) | 14 (21.5) | 24 (36.9) |
| Yes | 80 (47.3) | 31 (18.3) | 49 (29) | 27 (41.5) | 18 (27.7) | 9 (13.8) |
| Palliative_Care | ||||||
| No | 122 (72.2) | 62 (36.7) | 60 (35.5) | 47 (72.3) | 21 (32.3) | 26 (40) |
| Yes | 47 (27.8) | 19 (11.2) | 28 (16.6) | 18 (27.7) | 11 (16.9) | 7 (10.8) |
| Brain_Confined_Met | ||||||
| No | 67 (39.6) | 24 (14.2) | 43 (25.4) | 22 (33.8) | 13 (20) | 9 (13.8) |
| Yes | 102 (60.4) | 57 (33.7) | 45 (26.6) | 43 (66.2) | 19 (29.2) | 24 (36.9) |
| CDCC_Score | ||||||
| 0 | 116 (68.6) | 50 (29.6) | 66 (39.1) | 46 (70.8) | 23 (35.4) | 23 (35.4) |
| 1 | 37 (21.9) | 19 (11.2) | 18 (10.7) | 12 (18.5) | 8 (12.3) | 4 (6.2) |
| 2 | 10 (5.9) | 7 (4.1) | 3 (1.8) | 5 (7.7) | 1 (1.5) | 4 (6.2) |
| 3 | 6 (3.6) | 5 (3) | 1 (0.6) | 2 (3.1) | 0 (0) | 2 (3.1) |
| Surgery_Met | ||||||
| No | 144 (85.2) | 72 (42.6) | 72 (42.6) | 55 (84.6) | 25 (38.5) | 30 (46.2) |
| Yes | 25 (14.8) | 9 (5.3) | 16 (9.5) | 10 (15.4) | 7 (10.8) | 3 (4.6) |
TCC transitional cell carcinoma, PUC papillary urothelial carcinoma, SCC small cell carcinoma
Fig. 2Clinical trait selection via the least absolute shrinkage and selection operator (LASSO) cox regression model. a Tenfold cross-validated error (first vertical line equals the minimum error (lambda = 0.066), whereas the second vertical line shows the cross-validated error within 1 standard error of the minimum). b The profile of coefficients in the model at varying levels of penalization plotted against the log (lambda) sequence
Univariate and multivariate Cox regression analysis of BCa patients based on clinicopathological characteristics derived from NCDB data in the training cohort
| Characteristics | Univariate analysis HR (95% CI) | P value | Multivariate analysis HR (95% CI) | P value |
|---|---|---|---|---|
| Age (< 65 years vs. ≥ 65 years) | 1.117 (0.819–1.525) | 0.48 | 1.032 (0.705–1.511) | 0.87 |
| Sex (male vs. female) | 0.861 (0.602–1.233) | 0.42 | 1.166 (0.756–1.797) | 0.49 |
| Race | ||||
| White vs. black | 0.871 (0.509–1.489) | 0.61 | 0.956 (0.523–1.747) | 0.88 |
| White vs. others | 0.889 (0.363–2.174) | 0.80 | 0.524 (0.197–1.39) | 0.19 |
| Grade | ||||
| Well differentiated vs. poorly differentiated | 0.896 (0.511–1.574) | 0.70 | 1.317 (0.653–2.656) | 0.44 |
| Well differentiated vs. unknown | 1.144 (0.636–2.057) | 0.65 | 1.634 (0.753–3.546) | 0.21 |
| Histology | ||||
| TCC vs. PUC | 0.851 (0.588–1.232) | 0.39 | 1.181 (0.738–1.89) | 0.49 |
| TCC vs. SCC | 1.083 (0.563–2.087) | 0.81 | 1.495 (0.714–3.13) | 0.29 |
| TCC vs. others | 0.916 (0.578–1.45) | 0.71 | 0.629 (0.363–1.09) | 0.10 |
| Lymph_nodes | ||||
| No vs. yes | 0.835 (0.564–1.234) | 0.37 | 0.808 (0.51–1.28) | 0.36 |
| No vs. unknown | 0.985 (0.682–1.422) | 0.93 | 0.761 (0.485–1.196) | 0.24 |
| Lymph_Vas_Invasion | ||||
| No vs. yes | 1.098 (0.658–1.832) | 0.72 | 1.494 (0.816–2.736) | 0.19 |
| No vs. unknown | 1.291 (0.859–1.94) | 0.22 | 1.269 (0.764–2.107) | 0.36 |
| Tumor_Stage (low vs. high) | 1.247 (0.704–2.21) | 0.45 | 1.089 (0.536–2.211) | 0.81 |
| Met_Bone (no vs. yes) | 1.026 (0.742–1.42) | 0.88 | 0.61 (0.374–0.997) | 0.05 |
| Met_Liver (no vs. yes) | 0.978 (0.683–1.4) | 0.90 | 1.223 (0.761–1.966) | 0.41 |
| Met_Lung (no vs. yes) | 1.317 (0.962–1.802) | 0.09 | 0.878 (0.525–1.469) | 0.62 |
| Surgery primary | ||||
| Minimal invasive surgery vs. no surgery | 1.44 (1.031–2.011) | 0.03 | 2.529 (1.609–3.975) | < 0.001 |
| Minimal invasive surgery vs. non-minimal invasive | 0.923 (0.558–1.525) | 0.75 | 1.253 (0.672–2.334) | 0.48 |
| Chemotherapy (no vs. yes) | 0.353 (0.25–0.498) | < 0.001 | 0.213 (0.137–0.332) | < 0.001 |
| Radiation_Therapy (no vs. yes) | 0.723 (0.53–0.986) | 0.04 | 0.708 (0.486–1.031) | 0.07 |
| Palliative_Care (no vs. yes) | 0.922 (0.651–1.305) | 0.65 | 0.631 (0.413–0.964) | 0.03 |
| Brain_Confined_Met (non–brain confined vs. brain confined) | 1.248 (0.911–1.71) | 0.17 | 2.229 (1.144–4.345) | 0.02 |
| CDCC_Score | ||||
| 0 vs. 1 | 1.29 (0.886–1.878) | 0.18 | 1.439 (0.929–2.23) | 0.10 |
| 0 vs. 2 | 1.529 (0.798–2.926) | 0.20 | 1.865 (0.861–4.038) | 0.11 |
| 0 vs. 3 | 2.14 (0.932–4.91) | 0.07 | 2.545 (1.035–6.256) | 0.04 |
| Surgery_Met (yes vs. no) | 0.9 (0.58–1.396) | 0.64 | 0.918 (0.546–1.542) | 0.75 |
Fig. 3Nomogram to estimate the risk and predict the survival of BCa patients with brain metastasis. Bars in blue display the distribution of patients in the training cohort. To calculate the total points of a specific patient, locate the value of each variable on the top point axis, add the points from all of the variables, and draw a vertical line from the total point axis to determine the 0.5 and 1 year death probabilities at the lower line of the nomogram. Purple track provided an example for the calculation of total-points-to-outcome (*P < 0.05, **P < 0.01, ***P < 0.001)
The risk point of each variable and computational formula of OS
| Clinical variables | Values | Risk points |
|---|---|---|
| Radiation_Therapy | No | 56 |
| Yes | 42 | |
| Palliative_Care | No | 56 |
| Yes | 40 | |
| Brain_Confined_Met | Non-brain confined | 73 |
| Brain confined | 56 | |
| CDCC_Score | 1 | 56 |
| 2 | 74 | |
| 3 | 76 | |
| 4 | 100 | |
| Surgery_Primary | No | 90 |
| Minimal invasive | 56 | |
| Non-minimal invasive | 53 | |
| Chemotherapy | No | 56 |
| Yes | 0 |
0.5-Year Survival = 7.5e−08 * points ^3 − 2.7837e−05 * points ^2 − 0.001082565 * points + 0.815518912
1-Year survival = 1.21e−07 * points ^3 − 2.3544e−05 * points ^2 − 0.003130703 * points + 0.651899934
Fig. 4Time-dependent ROC curves comparing the prognostic accuracy of nomogram in BCa patients with metastatic brain lesions in the training cohort (a) and validation set (d). Validity of the predictive performance of the nomogram in the training cohort (b, c) and validation set (e, f). Nomogram-predicted probability of overall survival is plotted on the x-axis; actual overall survival is plotted on the y-axis. ROC receiver operator characteristic, AUC area under the curve
Fig. 5Kaplan–Meier survival analysis for all patients according to our classifier stratified by clinicopathological risk factors. Survival curves show the overall survival of high risk (blue) and low risk (green) groups between the training cohort (a) and validation set (b). Confidence interval band and risk table are also added
Fig. 6Decision curve analysis for OS. Black line: all victims dead. Gray line: none victims dead. Black dashed line: model of the nomogram. Red dashed line: staging system of TNM