Literature DB >> 31809194

A Type IV-A CRISPR-Cas System in Pseudomonas aeruginosa Mediates RNA-Guided Plasmid Interference In Vivo.

Valerie M Crowley1, Adam Catching2, Hannah N Taylor1, Adair L Borges3, Josie Metcalf1, Joseph Bondy-Denomy3, Ryan N Jackson1.   

Abstract

Bacteria and archaea use CRISPR-Cas adaptive immune systems to destroy complementary nucleic acids using RNAs derived from CRISPR loci. Here, we provide the first functional evidence for type IV CRISPR-Cas, demonstrating that the system from Pseudomonas aeruginosa strain PA83 mediates RNA-guided interference against a plasmid in vivo, both clearing the plasmid and inhibiting its uptake. This interference depends on the putative NTP-dependent helicase activity of Csf4/DinG.

Entities:  

Year:  2019        PMID： 31809194      PMCID： PMC6919247          DOI： 10.1089/crispr.2019.0048

Source DB:  PubMed          Journal:  CRISPR J        ISSN： 2573-1599


  22 in total

Review 1.  CRISPR-Cas immunity in prokaryotes.

Authors:  Luciano A Marraffini
Journal:  Nature       Date:  2015-10-01       Impact factor: 49.962

2.  Structural basis of Type IV CRISPR RNA biogenesis by a Cas6 endoribonuclease.

Authors:  Hannah N Taylor; Emily E Warner; Matthew J Armbrust; Valerie M Crowley; Keith J Olsen; Ryan N Jackson
Journal:  RNA Biol       Date:  2019-06-28       Impact factor: 4.652

Review 3.  Classification and Nomenclature of CRISPR-Cas Systems: Where from Here?

Authors:  Kira S Makarova; Yuri I Wolf; Eugene V Koonin
Journal:  CRISPR J       Date:  2018-10

Review 4.  Diversity, classification and evolution of CRISPR-Cas systems.

Authors:  Eugene V Koonin; Kira S Makarova; Feng Zhang
Journal:  Curr Opin Microbiol       Date:  2017-06-09       Impact factor: 7.934

Review 5.  Conformational regulation of CRISPR-associated nucleases.

Authors:  Ryan N Jackson; Paul Bg van Erp; Samuel H Sternberg; Blake Wiedenheft
Journal:  Curr Opin Microbiol       Date:  2017-06-21       Impact factor: 7.934

Review 6.  Evolution of adaptive immunity from transposable elements combined with innate immune systems.

Authors:  Eugene V Koonin; Mart Krupovic
Journal:  Nat Rev Genet       Date:  2014-12-09       Impact factor: 53.242

7.  Characterization of the DNA damage-inducible helicase DinG from Escherichia coli.

Authors:  Oleg N Voloshin; Filip Vanevski; Pavel P Khil; R Daniel Camerini-Otero
Journal:  J Biol Chem       Date:  2003-05-14       Impact factor: 5.157

8.  Mechanism of CRISPR-RNA guided recognition of DNA targets in Escherichia coli.

Authors:  Paul B G van Erp; Ryan N Jackson; Joshua Carter; Sarah M Golden; Scott Bailey; Blake Wiedenheft
Journal:  Nucleic Acids Res       Date:  2015-08-03       Impact factor: 16.971

9.  The DinG protein from Escherichia coli is a structure-specific helicase.

Authors:  Oleg N Voloshin; R Daniel Camerini-Otero
Journal:  J Biol Chem       Date:  2007-04-06       Impact factor: 5.157

Review 10.  Molecular mechanisms of CRISPR-mediated microbial immunity.

Authors:  Giedrius Gasiunas; Tomas Sinkunas; Virginijus Siksnys
Journal:  Cell Mol Life Sci       Date:  2014-02       Impact factor: 9.261
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  14 in total

Review 1.  Chemistry of Class 1 CRISPR-Cas effectors: Binding, editing, and regulation.

Authors:  Tina Y Liu; Jennifer A Doudna
Journal:  J Biol Chem       Date:  2020-08-14       Impact factor: 5.157

Review 2.  Alternative functions of CRISPR-Cas systems in the evolutionary arms race.

Authors:  Prarthana Mohanraju; Chinmoy Saha; Peter van Baarlen; Rogier Louwen; Raymond H J Staals; John van der Oost
Journal:  Nat Rev Microbiol       Date:  2022-01-06       Impact factor: 60.633

3.  Characterization of the self-targeting Type IV CRISPR interference system in Pseudomonas oleovorans.

Authors:  Xiaohan Guo; Mariana Sanchez-Londono; José Vicente Gomes-Filho; Rogelio Hernandez-Tamayo; Selina Rust; Leah M Immelmann; Pascal Schäfer; Julia Wiegel; Peter L Graumann; Lennart Randau
Journal:  Nat Microbiol       Date:  2022-09-29       Impact factor: 30.964

4.  Evolution of Type IV CRISPR-Cas Systems: Insights from CRISPR Loci in Integrative Conjugative Elements of Acidithiobacillia.

Authors:  Ana Moya-Beltrán; Kira S Makarova; Lillian G Acuña; Yuri I Wolf; Paulo C Covarrubias; Sergey A Shmakov; Cristian Silva; Igor Tolstoy; D Barrie Johnson; Eugene V Koonin; Raquel Quatrini
Journal:  CRISPR J       Date:  2021-09-28

5.  CRISPR-Cas systems are widespread accessory elements across bacterial and archaeal plasmids.

Authors:  Rafael Pinilla-Redondo; Jakob Russel; David Mayo-Muñoz; Shiraz A Shah; Roger A Garrett; Joseph Nesme; Jonas S Madsen; Peter C Fineran; Søren J Sørensen
Journal:  Nucleic Acids Res       Date:  2022-05-06       Impact factor: 19.160

Review 6.  The CRISPR-Cas Mechanism for Adaptive Immunity and Alternate Bacterial Functions Fuels Diverse Biotechnologies.

Authors:  Sydney Newsom; Hari Priya Parameshwaran; Lindsie Martin; Rakhi Rajan
Journal:  Front Cell Infect Microbiol       Date:  2021-01-28       Impact factor: 5.293

7.  Mobile element warfare via CRISPR and anti-CRISPR in Pseudomonas aeruginosa.

Authors:  Lina M León; Allyson E Park; Adair L Borges; Jenny Y Zhang; Joseph Bondy-Denomy
Journal:  Nucleic Acids Res       Date:  2021-02-26       Impact factor: 16.971

8.  Structure of a type IV CRISPR-Cas ribonucleoprotein complex.

Authors:  Yi Zhou; Jack P K Bravo; Hannah N Taylor; Jurre A Steens; Ryan N Jackson; Raymond H J Staals; David W Taylor
Journal:  iScience       Date:  2021-02-17

Review 9.  Endogenous Type I CRISPR-Cas: From Foreign DNA Defense to Prokaryotic Engineering.

Authors:  Yanli Zheng; Jie Li; Baiyang Wang; Jiamei Han; Yile Hao; Shengchen Wang; Xiangdong Ma; Shihui Yang; Lixin Ma; Li Yi; Wenfang Peng
Journal:  Front Bioeng Biotechnol       Date:  2020-03-04

Review 10.  Heavily Armed Ancestors: CRISPR Immunity and Applications in Archaea with a Comparative Analysis of CRISPR Types in Sulfolobales.

Authors:  Isabelle Anna Zink; Erika Wimmer; Christa Schleper
Journal:  Biomolecules       Date:  2020-11-06
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