Literature DB >> 31794245

RNA Splicing by the Spliceosome.

Max E Wilkinson1, Clément Charenton1, Kiyoshi Nagai1.   

Abstract

The spliceosome removes introns from messenger RNA precursors (pre-mRNA). Decades of biochemistry and genetics combined with recent structural studies of the spliceosome have produced a detailed view of the mechanism of splicing. In this review, we aim to make this mechanism understandable and provide several videos of the spliceosome in action to illustrate the intricate choreography of splicing. The U1 and U2 small nuclear ribonucleoproteins (snRNPs) mark an intron and recruit the U4/U6.U5 tri-snRNP. Transfer of the 5' splice site (5'SS) from U1 to U6 snRNA triggers unwinding of U6 snRNA from U4 snRNA. U6 folds with U2 snRNA into an RNA-based active site that positions the 5'SS at two catalytic metal ions. The branch point (BP) adenosine attacks the 5'SS, producing a free 5' exon. Removal of the BP adenosine from the active site allows the 3'SS to bind, so that the 5' exon attacks the 3'SS to produce mature mRNA and an excised lariat intron.

Entities:  

Keywords:  RNA catalysis; cryo-EM; cryo–electron microscopy; crystallography; helicases; pre-mRNA splicing; spliceosome

Mesh:

Substances:

Year:  2019        PMID: 31794245     DOI: 10.1146/annurev-biochem-091719-064225

Source DB:  PubMed          Journal:  Annu Rev Biochem        ISSN: 0066-4154            Impact factor:   23.643


  107 in total

1.  Profiling of cis- and trans-acting factors supporting noncanonical splice site activation.

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2.  The proteomic analysis shows enrichment of RNA surveillance pathways in adult SHH and extensive metabolic reprogramming in Group 3 medulloblastomas.

Authors:  Manubhai Kp; Anurag Kumar; Deeptarup Biswas; Aliasgar Moiyadi; Prakash Shetty; Tejpal Gupta; Sridhar Epari; Neelam Shirsat; Sanjeeva Srivastava
Journal:  Brain Tumor Pathol       Date:  2021-01-12       Impact factor: 3.298

3.  Phosphorylation found inside RNA.

Authors:  Mark Helm; Yuri Motorin
Journal:  Nature       Date:  2022-05       Impact factor: 49.962

4.  U5 snRNA Interactions With Exons Ensure Splicing Precision.

Authors:  Olga V Artemyeva-Isman; Andrew C G Porter
Journal:  Front Genet       Date:  2021-07-02       Impact factor: 4.599

5.  Design and synthesis of herboxidiene derivatives that potently inhibit in vitro splicing.

Authors:  Arun K Ghosh; Srinivasa Rao Allu; Guddeti Chandrashekar Reddy; Adriana Gamboa Lopez; Patricia Mendez; Melissa S Jurica
Journal:  Org Biomol Chem       Date:  2021-02-18       Impact factor: 3.876

6.  Co-transcriptional splicing regulates 3' end cleavage during mammalian erythropoiesis.

Authors:  Kirsten A Reimer; Claudia A Mimoso; Karen Adelman; Karla M Neugebauer
Journal:  Mol Cell       Date:  2021-01-12       Impact factor: 17.970

Review 7.  U1 snRNP telescripting: molecular mechanisms and beyond.

Authors:  Yi Ran; Yanhui Deng; Chengguo Yao
Journal:  RNA Biol       Date:  2021-01-15       Impact factor: 4.652

Review 8.  RNA Epigenetics: Fine-Tuning Chromatin Plasticity and Transcriptional Regulation, and the Implications in Human Diseases.

Authors:  Amber Willbanks; Shaun Wood; Jason X Cheng
Journal:  Genes (Basel)       Date:  2021-04-22       Impact factor: 4.096

9.  An in vitro reconstituted U1 snRNP allows the study of the disordered regions of the particle and the interactions with proteins and ligands.

Authors:  Sébastien Campagne; Tebbe de Vries; Florian Malard; Pavel Afanasyev; Georg Dorn; Emil Dedic; Joachim Kohlbrecher; Daniel Boehringer; Antoine Cléry; Frédéric H-T Allain
Journal:  Nucleic Acids Res       Date:  2021-06-21       Impact factor: 16.971

Review 10.  Splicing alterations in healthy aging and disease.

Authors:  Brittany Lynn Angarola; Olga Anczuków
Journal:  Wiley Interdiscip Rev RNA       Date:  2021-02-09       Impact factor: 9.957

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