Literature DB >> 31793775

Programming DNA Tube Circumference by Tile Offset Connection.

Yingwei Zhang1, Xianhui Chen1, Guangjie Kang1, Ruizi Peng2,3, Victor Pan3, Ranjani Sundaresan3, Pengfei Wang4, Yonggang Ke3,5.   

Abstract

DNA tubes with prescribed circumferences are appealing for numerous multidisciplinary applications. The DNA single-stranded tiles (SSTs) assembly method has demonstrated an unprecedented capability for programming the circumferences of DNA tubes in a modular fashion. Nevertheless, a distinct set of SSTs is typically required to assemble DNA tube of a specific circumference, with wider tubes requiring higher numbers of tiles of unique sequences, which not only increases the expense and design complexity but also hampers the assembly yield. Herein, we introduce "offset connection" to circumvent such challenges in conventional SST tube assembly. In this new connection scheme, the boundary SST tiles in an SST array are designed to connect in an offset manner. To compensate for the offset, the SST array has to grow wider until the array can close to form a wide tube with a tolerable degree of twist. Using this strategy, we have successfully assembled DNA tubes with prescribed circumferences consisting of 8, 12, 14, 16, 20, 24, 28, 32, 36, 42, 56, or 70 helices from two distinct sets of SSTs composed of 19×4 or 19×14 tiles.

Entities:  

Year:  2019        PMID: 31793775      PMCID: PMC7249701          DOI: 10.1021/jacs.9b08921

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  24 in total

1.  Dynamic DNA Nanotubes: Reversible Switching between Single and Double-Stranded Forms, and Effect of Base Deletions.

Authors:  Janane F Rahbani; Amani A Hariri; Gonzalo Cosa; Hanadi F Sleiman
Journal:  ACS Nano       Date:  2015-11-23       Impact factor: 15.881

2.  DNA-nanotube-induced alignment of membrane proteins for NMR structure determination.

Authors:  Shawn M Douglas; James J Chou; William M Shih
Journal:  Proc Natl Acad Sci U S A       Date:  2007-04-02       Impact factor: 11.205

3.  Directing self-assembly of DNA nanotubes using programmable seeds.

Authors:  Abdul M Mohammed; Rebecca Schulman
Journal:  Nano Lett       Date:  2013-08-15       Impact factor: 11.189

4.  A modular DNA origami-based enzyme cascade nanoreactor.

Authors:  Veikko Linko; Marika Eerikäinen; Mauri A Kostiainen
Journal:  Chem Commun (Camb)       Date:  2015-03-28       Impact factor: 6.222

5.  Single-step rapid assembly of DNA origami nanostructures for addressable nanoscale bioreactors.

Authors:  Yanming Fu; Dongdong Zeng; Jie Chao; Yanqiu Jin; Zhao Zhang; Huajie Liu; Di Li; Hongwei Ma; Qing Huang; Kurt V Gothelf; Chunhai Fan
Journal:  J Am Chem Soc       Date:  2012-12-28       Impact factor: 15.419

Review 6.  DNA nanostructure meets nanofabrication.

Authors:  Guomei Zhang; Sumedh P Surwade; Feng Zhou; Haitao Liu
Journal:  Chem Soc Rev       Date:  2013-04-07       Impact factor: 54.564

7.  Small circular DNA molecules act as rigid motifs to build DNA nanotubes.

Authors:  Hongning Zheng; Minyu Xiao; Qin Yan; Yinzhou Ma; Shou-Jun Xiao
Journal:  J Am Chem Soc       Date:  2014-07-10       Impact factor: 15.419

8.  Understanding the mechanical properties of DNA origami tiles and controlling the kinetics of their folding and unfolding reconfiguration.

Authors:  Haorong Chen; Te-Wei Weng; Molly M Riccitelli; Yi Cui; Joseph Irudayaraj; Jong Hyun Choi
Journal:  J Am Chem Soc       Date:  2014-05-02       Impact factor: 15.419

9.  Chiral DNA Origami Nanotubes with Well-Defined and Addressable Inside and Outside Surfaces.

Authors:  Florence Benn; Natalie E C Haley; Alexandra E Lucas; Emma Silvester; Seham Helmi; Robert Schreiber; Jonathan Bath; Andrew J Turberfield
Journal:  Angew Chem Int Ed Engl       Date:  2018-05-25       Impact factor: 15.336

10.  Folding DNA into twisted and curved nanoscale shapes.

Authors:  Hendrik Dietz; Shawn M Douglas; William M Shih
Journal:  Science       Date:  2009-08-07       Impact factor: 47.728

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  1 in total

1.  Developmental Self-Assembly of a DNA Ring with Stimulus-Responsive Size and Growth Direction.

Authors:  Allison T Glynn; Samuel R Davidson; Lulu Qian
Journal:  J Am Chem Soc       Date:  2022-05-26       Impact factor: 16.383

  1 in total

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