Literature DB >> 31786013

Discovering Precise Temporal Patterns in Large-Scale Neural Recordings through Robust and Interpretable Time Warping.

Alex H Williams1, Ben Poole2, Niru Maheswaranathan2, Ashesh K Dhawale3, Tucker Fisher4, Christopher D Wilson5, David H Brann3, Eric M Trautmann6, Stephen Ryu7, Roman Shusterman8, Dmitry Rinberg9, Bence P Ölveczky3, Krishna V Shenoy10, Surya Ganguli11.   

Abstract

Though the temporal precision of neural computation has been studied intensively, a data-driven determination of this precision remains a fundamental challenge. Reproducible spike patterns may be obscured on single trials by uncontrolled temporal variability in behavior and cognition and may not be time locked to measurable signatures in behavior or local field potentials (LFP). To overcome these challenges, we describe a general-purpose time warping framework that reveals precise spike-time patterns in an unsupervised manner, even when these patterns are decoupled from behavior or are temporally stretched across single trials. We demonstrate this method across diverse systems: cued reaching in nonhuman primates, motor sequence production in rats, and olfaction in mice. This approach flexibly uncovers diverse dynamical firing patterns, including pulsatile responses to behavioral events, LFP-aligned oscillatory spiking, and even unanticipated patterns, such as 7 Hz oscillations in rat motor cortex that are not time locked to measured behaviors or LFP.
Copyright © 2019 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Exploratory Data Analysis; Neural Oscillations; Population Dynamics; Spike Train Analysis; Statistics; Time Warping; Unsupervised Learning

Mesh:

Substances:

Year:  2019        PMID: 31786013      PMCID: PMC7336835          DOI: 10.1016/j.neuron.2019.10.020

Source DB:  PubMed          Journal:  Neuron        ISSN: 0896-6273            Impact factor:   17.173


  57 in total

1.  Dynamic brain sources of visual evoked responses.

Authors:  S Makeig; M Westerfield; T P Jung; S Enghoff; J Townsend; E Courchesne; T J Sejnowski
Journal:  Science       Date:  2002-01-25       Impact factor: 47.728

2.  Estimating receptive fields in the presence of spike-time jitter.

Authors:  Tim Gollisch
Journal:  Network       Date:  2006-06       Impact factor: 1.273

Review 3.  Neural oscillations: beta band activity across motor networks.

Authors:  Preeya Khanna; Jose M Carmena
Journal:  Curr Opin Neurobiol       Date:  2014-12-17       Impact factor: 6.627

Review 4.  Neuroscience Needs Behavior: Correcting a Reductionist Bias.

Authors:  John W Krakauer; Asif A Ghazanfar; Alex Gomez-Marin; Malcolm A MacIver; David Poeppel
Journal:  Neuron       Date:  2017-02-08       Impact factor: 17.173

5.  Ensemble coding of vocal control in birdsong.

Authors:  Anthony Leonardo; Michale S Fee
Journal:  J Neurosci       Date:  2005-01-19       Impact factor: 6.167

6.  Motor cortex is required for learning but not for executing a motor skill.

Authors:  Risa Kawai; Timothy Markman; Rajesh Poddar; Raymond Ko; Antoniu L Fantana; Ashesh K Dhawale; Adam R Kampff; Bence P Ölveczky
Journal:  Neuron       Date:  2015-04-16       Impact factor: 17.173

7.  Demixed principal component analysis of neural population data.

Authors:  Dmitry Kobak; Wieland Brendel; Christos Constantinidis; Claudia E Feierstein; Adam Kepecs; Zachary F Mainen; Xue-Lian Qi; Ranulfo Romo; Naoshige Uchida; Christian K Machens
Journal:  Elife       Date:  2016-04-12       Impact factor: 8.140

8.  The Largest Response Component in the Motor Cortex Reflects Movement Timing but Not Movement Type.

Authors:  Matthew T Kaufman; Jeffrey S Seely; David Sussillo; Stephen I Ryu; Krishna V Shenoy; Mark M Churchland
Journal:  eNeuro       Date:  2016-08-30

9.  A Neural Mechanism for Sensing and Reproducing a Time Interval.

Authors:  Mehrdad Jazayeri; Michael N Shadlen
Journal:  Curr Biol       Date:  2015-10-08       Impact factor: 10.834

10.  A spike sorting toolbox for up to thousands of electrodes validated with ground truth recordings in vitro and in vivo.

Authors:  Pierre Yger; Giulia Lb Spampinato; Elric Esposito; Baptiste Lefebvre; Stéphane Deny; Christophe Gardella; Marcel Stimberg; Florian Jetter; Guenther Zeck; Serge Picaud; Jens Duebel; Olivier Marre
Journal:  Elife       Date:  2018-03-20       Impact factor: 8.140

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  7 in total

1.  The brain time toolbox, a software library to retune electrophysiology data to brain dynamics.

Authors:  Sander van Bree; María Melcón; Luca D Kolibius; Casper Kerrén; Maria Wimber; Simon Hanslmayr
Journal:  Nat Hum Behav       Date:  2022-06-20

2.  Point process models for sequence detection in high-dimensional neural spike trains.

Authors:  Alex H Williams; Anthony Degleris; Yixin Wang; Scott W Linderman
Journal:  Adv Neural Inf Process Syst       Date:  2020-12

3.  Unsupervised Bayesian Ising Approximation for decoding neural activity and other biological dictionaries.

Authors:  Damián G Hernández; Samuel J Sober; Ilya Nemenman
Journal:  Elife       Date:  2022-03-22       Impact factor: 8.713

4.  Low-dimensional learned feature spaces quantify individual and group differences in vocal repertoires.

Authors:  Jack Goffinet; Samuel Brudner; Richard Mooney; John Pearson
Journal:  Elife       Date:  2021-05-14       Impact factor: 8.140

5.  Supporting generalization in non-human primate behavior by tapping into structural knowledge: Examples from sensorimotor mappings, inference, and decision-making.

Authors:  Jean-Paul Noel; Baptiste Caziot; Stefania Bruni; Nora E Fitzgerald; Eric Avila; Dora E Angelaki
Journal:  Prog Neurobiol       Date:  2021-01-14       Impact factor: 10.885

6.  Odor sampling strategies in mice with genetically altered olfactory responses.

Authors:  Johannes Reisert; Glen J Golden; Michele Dibattista; Alan Gelperin
Journal:  PLoS One       Date:  2021-05-03       Impact factor: 3.240

7.  Clustering and control for adaptation uncovers time-warped spike time patterns in cortical networks in vivo.

Authors:  James B Isbister; Vicente Reyes-Puerta; Jyh-Jang Sun; Illia Horenko; Heiko J Luhmann
Journal:  Sci Rep       Date:  2021-07-29       Impact factor: 4.379

  7 in total

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