Literature DB >> 34291176

Developing bioorthogonal probes to span a spectrum of reactivities.

Sean S Nguyen1, Jennifer A Prescher1,2,3.   

Abstract

Bioorthogonal chemistries enable researchers to interrogate biomolecules in living systems. These reactions are highly selective and biocompatible and can be performed in many complex environments. However, like any organic transformation, there is no perfect bioorthogonal reaction. Choosing the "best fit" for a desired application is critical. Correspondingly, there must be a variety of chemistries-spanning a spectrum of rates and other features-to choose from. Over the past few years, significant strides have been made towards not only expanding the number of bioorthogonal chemistries, but also fine-tuning existing reactions for particular applications. In this Review, we highlight recent advances in bioorthogonal reaction development, focusing on how physical organic chemistry principles have guided probe design. The continued expansion of this toolset will provide more precisely tuned reagents for manipulating bonds in distinct environments.

Year:  2020        PMID: 34291176      PMCID: PMC8291219          DOI: 10.1038/s41570-020-0205-0

Source DB:  PubMed          Journal:  Nat Rev Chem        ISSN: 2397-3358            Impact factor:   34.035


  247 in total

Review 1.  Cu-catalyzed azide-alkyne cycloaddition.

Authors:  Morten Meldal; Christian Wenzel Tornøe
Journal:  Chem Rev       Date:  2008-08       Impact factor: 60.622

Review 2.  Sydnone-alkyne cycloaddition: applications in synthesis and bioconjugation.

Authors:  Elodie Decuypère; Lucie Plougastel; Davide Audisio; Frédéric Taran
Journal:  Chem Commun (Camb)       Date:  2017-10-19       Impact factor: 6.222

3.  Modular click chemistry libraries for functional screens using a diazotizing reagent.

Authors:  Genyi Meng; Taijie Guo; Tiancheng Ma; Jiong Zhang; Yucheng Shen; Karl Barry Sharpless; Jiajia Dong
Journal:  Nature       Date:  2019-10-02       Impact factor: 49.962

4.  Cellular consequences of copper complexes used to catalyze bioorthogonal click reactions.

Authors:  David C Kennedy; Craig S McKay; Marc C B Legault; Dana C Danielson; Jessie A Blake; Adrian F Pegoraro; Albert Stolow; Zoltan Mester; John Paul Pezacki
Journal:  J Am Chem Soc       Date:  2011-10-19       Impact factor: 15.419

Review 5.  The chemical toolbox for monitoring protein fatty acylation and prenylation.

Authors:  Rami N Hannoush; Jinglucy Sun
Journal:  Nat Chem Biol       Date:  2010-07       Impact factor: 15.040

6.  Hydrophilic azaspiroalkenes as robust bioorthogonal reporters.

Authors:  Peng An; Hsuan-Yi Wu; Tracey M Lewandowski; Qing Lin
Journal:  Chem Commun (Camb)       Date:  2018-12-11       Impact factor: 6.222

7.  Bis(arylmethyl)-substituted unsymmetrical phosphites for the synthesis of lipidated peptides via Staudinger-phosphite reactions.

Authors:  N Nischan; M-A Kasper; T Mathew; C P R Hackenberger
Journal:  Org Biomol Chem       Date:  2016-07-18       Impact factor: 3.876

8.  One, Two, Three: A Bioorthogonal Triple Labelling Strategy for Studying the Dynamics of Plant Cell Wall Formation In Vivo.

Authors:  Clemence Simon; Cedric Lion; Corentin Spriet; Fabien Baldacci-Cresp; Simon Hawkins; Christophe Biot
Journal:  Angew Chem Int Ed Engl       Date:  2018-11-21       Impact factor: 15.336

9.  Direct visualization of newly synthesized target proteins in situ.

Authors:  Susanne tom Dieck; Lisa Kochen; Cyril Hanus; Maximilian Heumüller; Ina Bartnik; Belquis Nassim-Assir; Katrin Merk; Thorsten Mosler; Sakshi Garg; Stefanie Bunse; David A Tirrell; Erin M Schuman
Journal:  Nat Methods       Date:  2015-03-16       Impact factor: 28.547

10.  Vinylboronic Acids as Efficient Bioorthogonal Reactants for Tetrazine Labeling in Living Cells.

Authors:  Selma Eising; Nicole G A van der Linden; Fleur Kleinpenning; Kimberly M Bonger
Journal:  Bioconjug Chem       Date:  2018-02-19       Impact factor: 4.774

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  20 in total

1.  Superfast Tetrazole-BCN Cycloaddition Reaction for Bioorthogonal Protein Labeling on Live Cells.

Authors:  Gangam Srikanth Kumar; Stefano Racioppi; Eva Zurek; Qing Lin
Journal:  J Am Chem Soc       Date:  2021-12-29       Impact factor: 15.419

Review 2.  Nanomaterial-based bioorthogonal nanozymes for biological applications.

Authors:  Stefano Fedeli; Jungkyun Im; Sanjana Gopalakrishnan; James L Elia; Aarohi Gupta; Dongkap Kim; Vincent M Rotello
Journal:  Chem Soc Rev       Date:  2021-12-13       Impact factor: 54.564

Review 3.  Tools for mammalian glycoscience research.

Authors:  Matthew E Griffin; Linda C Hsieh-Wilson
Journal:  Cell       Date:  2022-07-08       Impact factor: 66.850

4.  Light-activated tetrazines enable precision live-cell bioorthogonal chemistry.

Authors:  Luping Liu; Dongyang Zhang; Mai Johnson; Neal K Devaraj
Journal:  Nat Chem       Date:  2022-07-04       Impact factor: 24.274

5.  Spatiotemporal multiplexed immunofluorescence imaging of living cells and tissues with bioorthogonal cycling of fluorescent probes.

Authors:  Jina Ko; Martin Wilkovitsch; Juhyun Oh; Rainer H Kohler; Evangelia Bolli; Mikael J Pittet; Claudio Vinegoni; David B Sykes; Hannes Mikula; Ralph Weissleder; Jonathan C T Carlson
Journal:  Nat Biotechnol       Date:  2022-06-02       Impact factor: 68.164

6.  Bioorthogonally activatable cyanine dye with torsion-induced disaggregation for in vivo tumor imaging.

Authors:  Xianghan Zhang; Jingkai Gao; Yingdi Tang; Jie Yu; Si Si Liew; Chaoqiang Qiao; Yutian Cao; Guohuan Liu; Hongyu Fan; Yuqiong Xia; Jie Tian; Kanyi Pu; Zhongliang Wang
Journal:  Nat Commun       Date:  2022-06-18       Impact factor: 17.694

7.  SuFExable NH-Pyrazoles via 1,3-Dipolar Cycloadditions of Diazo Compounds with Bromoethenylsulfonyl Fluoride.

Authors:  Pavel Yamanushkin; Kemal Kaya; Mark Aldren M Feliciano; Brian Gold
Journal:  J Org Chem       Date:  2022-02-10       Impact factor: 4.198

Review 8.  Enzyme-mediated bioorthogonal technologies: catalysts, chemoselective reactions and recent methyltransferase applications.

Authors:  Elnaz Jalali; Jon S Thorson
Journal:  Curr Opin Biotechnol       Date:  2021-04-24       Impact factor: 10.279

9.  Targetable Conformationally Restricted Cyanines Enable Photon-Count-Limited Applications*.

Authors:  Patrick Eiring; Ryan McLaughlin; Siddharth S Matikonda; Zhongying Han; Lennart Grabenhorst; Dominic A Helmerich; Mara Meub; Gerti Beliu; Michael Luciano; Venu Bandi; Niels Zijlstra; Zhen-Dan Shi; Sergey G Tarasov; Rolf Swenson; Philip Tinnefeld; Viktorija Glembockyte; Thorben Cordes; Markus Sauer; Martin J Schnermann
Journal:  Angew Chem Int Ed Engl       Date:  2021-11-17       Impact factor: 16.823

10.  Enabling In Vivo Photocatalytic Activation of Rapid Bioorthogonal Chemistry by Repurposing Silicon-Rhodamine Fluorophores as Cytocompatible Far-Red Photocatalysts.

Authors:  Chuanqi Wang; He Zhang; Tao Zhang; Xiaoyu Zou; Hui Wang; Julia E Rosenberger; Raghu Vannam; William S Trout; Jonathan B Grimm; Luke D Lavis; Colin Thorpe; Xinqiao Jia; Zibo Li; Joseph M Fox
Journal:  J Am Chem Soc       Date:  2021-07-12       Impact factor: 16.383

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