Literature DB >> 31761718

Principles Governing Establishment versus Collapse of HIV-1 Cellular Spread.

Jason M Hataye1, Joseph P Casazza2, Katharine Best3, C Jason Liang4, Taina T Immonen5, David R Ambrozak2, Samuel Darko6, Amy R Henry6, Farida Laboune6, Frank Maldarelli7, Daniel C Douek6, Nicolas W Hengartner3, Takuya Yamamoto8, Brandon F Keele5, Alan S Perelson3, Richard A Koup9.   

Abstract

A population at low census might go extinct or instead transition into exponential growth to become firmly established. Whether this pivotal event occurs for a within-host pathogen can be the difference between health and illness. Here, we define the principles governing whether HIV-1 spread among cells fails or becomes established by coupling stochastic modeling with laboratory experiments. Following ex vivo activation of latently infected CD4 T cells without de novo infection, stochastic cell division and death contributes to high variability in the magnitude of initial virus release. Transition to exponential HIV-1 spread often fails due to release of an insufficient amount of replication-competent virus. Establishment of exponential growth occurs when virus produced from multiple infected cells exceeds a critical population size. We quantitatively define the crucial transition to exponential viral spread. Thwarting this process would prevent HIV transmission or rebound from the latent reservoir. Published by Elsevier Inc.

Entities:  

Keywords:  Allee effect; HIV; critical threshold; exponential growth; latency; latent reservoir; mathematical modeling; population dynamics; rebound; viral dynamics

Mesh:

Year:  2019        PMID: 31761718      PMCID: PMC6948011          DOI: 10.1016/j.chom.2019.10.006

Source DB:  PubMed          Journal:  Cell Host Microbe        ISSN: 1931-3128            Impact factor:   21.023


  68 in total

1.  Basic local alignment search tool.

Authors:  S F Altschul; W Gish; W Miller; E W Myers; D J Lipman
Journal:  J Mol Biol       Date:  1990-10-05       Impact factor: 5.469

2.  Precise Quantitation of the Latent HIV-1 Reservoir: Implications for Eradication Strategies.

Authors:  Amanda M Crooks; Rosalie Bateson; Anna B Cope; Noelle P Dahl; Morgan K Griggs; JoAnn D Kuruc; Cynthia L Gay; Joseph J Eron; David M Margolis; Ronald J Bosch; Nancie M Archin
Journal:  J Infect Dis       Date:  2015-04-15       Impact factor: 5.226

3.  Estimating lymphocyte division and death rates from CFSE data.

Authors:  Rob J De Boer; Vitaly V Ganusov; Dejan Milutinović; Philip D Hodgkin; Alan S Perelson
Journal:  Bull Math Biol       Date:  2006-05-16       Impact factor: 1.758

4.  ELDA: extreme limiting dilution analysis for comparing depleted and enriched populations in stem cell and other assays.

Authors:  Yifang Hu; Gordon K Smyth
Journal:  J Immunol Methods       Date:  2009-06-28       Impact factor: 2.303

5.  Presence of an inducible HIV-1 latent reservoir during highly active antiretroviral therapy.

Authors:  T W Chun; L Stuyver; S B Mizell; L A Ehler; J A Mican; M Baseler; A L Lloyd; M A Nowak; A S Fauci
Journal:  Proc Natl Acad Sci U S A       Date:  1997-11-25       Impact factor: 11.205

6.  Relative efficacy of T cell stimuli as inducers of productive HIV-1 replication in latently infected CD4 lymphocytes from patients on suppressive cART.

Authors:  Nadejda Beliakova-Bethell; Marjan Hezareh; Joseph K Wong; Matthew C Strain; Mary K Lewinski; Douglas D Richman; Celsa A Spina
Journal:  Virology       Date:  2017-08       Impact factor: 3.616

7.  Recovery of replication-competent HIV despite prolonged suppression of plasma viremia.

Authors:  J K Wong; M Hezareh; H F Günthard; D V Havlir; C C Ignacio; C A Spina; D D Richman
Journal:  Science       Date:  1997-11-14       Impact factor: 47.728

8.  Low-level viremia persists for at least 7 years in patients on suppressive antiretroviral therapy.

Authors:  Sarah Palmer; Frank Maldarelli; Ann Wiegand; Barry Bernstein; George J Hanna; Scott C Brun; Dale J Kempf; John W Mellors; John M Coffin; Martin S King
Journal:  Proc Natl Acad Sci U S A       Date:  2008-03-10       Impact factor: 11.205

9.  Stochastic variability in HIV affects viral eradication.

Authors:  Igor M Rouzine; Brandon S Razooky; Leor S Weinberger
Journal:  Proc Natl Acad Sci U S A       Date:  2014-09-08       Impact factor: 11.205

10.  Clonal CD4+ T cells in the HIV-1 latent reservoir display a distinct gene profile upon reactivation.

Authors:  Mila Jankovic; Michel C Nussenzweig; Lillian B Cohn; Israel T da Silva; Renan Valieris; Amy S Huang; Julio C C Lorenzi; Yehuda Z Cohen; Joy A Pai; Allison L Butler; Marina Caskey
Journal:  Nat Med       Date:  2018-04-23       Impact factor: 53.440

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  13 in total

1.  Intact proviral DNA assay analysis of large cohorts of people with HIV provides a benchmark for the frequency and composition of persistent proviral DNA.

Authors:  Francesco R Simonetti; Jennifer A White; Camille Tumiotto; Kristen D Ritter; Mian Cai; Rajesh T Gandhi; Steven G Deeks; Bonnie J Howell; Luis J Montaner; Joel N Blankson; Albine Martin; Gregory M Laird; Robert F Siliciano; John W Mellors; Janet D Siliciano
Journal:  Proc Natl Acad Sci U S A       Date:  2020-07-20       Impact factor: 11.205

Review 2.  The Biology of the HIV-1 Latent Reservoir and Implications for Cure Strategies.

Authors:  Lillian B Cohn; Nicolas Chomont; Steven G Deeks
Journal:  Cell Host Microbe       Date:  2020-04-08       Impact factor: 21.023

3.  Quantitative Viral Outgrowth Assay to Measure the Functional SIV Reservoir in Myeloid Cells.

Authors:  C M Abreu; R T Veenhuis; E N Shirk; S E Queen; B T Bullock; J L Mankowski; L Gama; J E Clements
Journal:  Methods Mol Biol       Date:  2022

4.  Potent anti-viral activity of a trispecific HIV neutralizing antibody in SHIV-infected monkeys.

Authors:  Amarendra Pegu; Ling Xu; Megan E DeMouth; Giulia Fabozzi; Kylie March; Cassandra G Almasri; Michelle D Cully; Keyun Wang; Eun Sung Yang; Joana Dias; Christine M Fennessey; Jason Hataye; Ronnie R Wei; Ercole Rao; Joseph P Casazza; Wanwisa Promsote; Mangaiarkarasi Asokan; Krisha McKee; Stephen D Schmidt; Xuejun Chen; Cuiping Liu; Wei Shi; Hui Geng; Kathryn E Foulds; Shing-Fen Kao; Amy Noe; Hui Li; George M Shaw; Tongqing Zhou; Constantinos Petrovas; John-Paul Todd; Brandon F Keele; Jeffrey D Lifson; Nicole A Doria-Rose; Richard A Koup; Zhi-Yong Yang; Gary J Nabel; John R Mascola
Journal:  Cell Rep       Date:  2022-01-04       Impact factor: 9.423

Review 5.  Low Inducibility of Latent Human Immunodeficiency Virus Type 1 Proviruses as a Major Barrier to Cure.

Authors:  Janet D Siliciano; Robert F Siliciano
Journal:  J Infect Dis       Date:  2021-02-15       Impact factor: 5.226

6.  Similar Frequency and Inducibility of Intact Human Immunodeficiency Virus-1 Proviruses in Blood and Lymph Nodes.

Authors:  Alyssa R Martin; Alexandra M Bender; Jada Hackman; Kyungyoon J Kwon; Briana A Lynch; Daniel Bruno; Craig Martens; Subul Beg; Sander S Florman; Niraj Desai; Dorry Segev; Gregory M Laird; Janet D Siliciano; Thomas C Quinn; Aaron A R Tobian; Christine M Durand; Robert F Siliciano; Andrew D Redd
Journal:  J Infect Dis       Date:  2021-07-15       Impact factor: 5.226

7.  HIV-1 Infection Transcriptomics: Meta-Analysis of CD4+ T Cells Gene Expression Profiles.

Authors:  Antonio Victor Campos Coelho; Rossella Gratton; João Paulo Britto de Melo; José Leandro Andrade-Santos; Rafael Lima Guimarães; Sergio Crovella; Paola Maura Tricarico; Lucas André Cavalcanti Brandão
Journal:  Viruses       Date:  2021-02-04       Impact factor: 5.048

8.  X-Linked RNA-Binding Motif Protein Modulates HIV-1 Infection of CD4+ T Cells by Maintaining the Trimethylation of Histone H3 Lysine 9 at the Downstream Region of the 5' Long Terminal Repeat of HIV Proviral DNA.

Authors:  Li Ma; Qing-An Jiang; Li Sun; Xianguang Yang; Hai Huang; Xia Jin; Chiyu Zhang; Jian-Hua Wang
Journal:  mBio       Date:  2020-04-21       Impact factor: 7.867

9.  Comparison of methods to quantify inducible HIV-1 outgrowth.

Authors:  P Nathan Enick; Joseph P Brooker; Camille M Tumiotto; Brittany T Staines; Joseph J Eron; Deborah K McMahon; Rajesh T Gandhi; John W Mellors; Michele D Sobolewski
Journal:  J Virus Erad       Date:  2021-05-17

10.  Amplification of Replication Competent HIV-1 by Adoptive Transfer of Human Cells From Infected Humanized Mice.

Authors:  Hang Su; Sruthi Sravanam; Santhi Gorantla; Rafal Kaminski; Kamel Khalili; Larisa Poluektova; Howard E Gendelman; Prasanta K Dash
Journal:  Front Cell Infect Microbiol       Date:  2020-02-11       Impact factor: 5.293

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