Literature DB >> 25201951

Stochastic variability in HIV affects viral eradication.

Igor M Rouzine1, Brandon S Razooky1, Leor S Weinberger2.   

Abstract

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Year:  2014        PMID： 25201951      PMCID： PMC4169906          DOI： 10.1073/pnas.1413362111

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN： 0027-8424            Impact factor:   11.205


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  18 in total

1.  Linkage disequilibrium test implies a large effective population number for HIV in vivo.

Authors:  I M Rouzine; J M Coffin
Journal:  Proc Natl Acad Sci U S A       Date:  1999-09-14       Impact factor: 11.205

2.  Transcriptional bursting from the HIV-1 promoter is a significant source of stochastic noise in HIV-1 gene expression.

Authors:  Abhyudai Singh; Brandon Razooky; Chris D Cox; Michael L Simpson; Leor S Weinberger
Journal:  Biophys J       Date:  2010-04-21       Impact factor: 4.033

3.  Differential protein partitioning within the herpesvirus tegument and envelope underlies a complex and variable virion architecture.

Authors:  Kevin Patrick Bohannon; Yonggun Jun; Steven P Gross; Gregory Allan Smith
Journal:  Proc Natl Acad Sci U S A       Date:  2013-04-08       Impact factor: 11.205

4.  Predicting the outcomes of treatment to eradicate the latent reservoir for HIV-1.

Authors:  Alison L Hill; Daniel I S Rosenbloom; Feng Fu; Martin A Nowak; Robert F Siliciano
Journal:  Proc Natl Acad Sci U S A       Date:  2014-08-05       Impact factor: 11.205

5.  Identification of a reservoir for HIV-1 in patients on highly active antiretroviral therapy.

Authors:  D Finzi; M Hermankova; T Pierson; L M Carruth; C Buck; R E Chaisson; T C Quinn; K Chadwick; J Margolick; R Brookmeyer; J Gallant; M Markowitz; D D Ho; D D Richman; R F Siliciano
Journal:  Science       Date:  1997-11-14       Impact factor: 47.728

6.  Screening for noise in gene expression identifies drug synergies.

Authors:  Roy D Dar; Nina N Hosmane; Michelle R Arkin; Robert F Siliciano; Leor S Weinberger
Journal:  Science       Date:  2014-06-05       Impact factor: 47.728

7.  Rapid seeding of the viral reservoir prior to SIV viraemia in rhesus monkeys.

Authors:  James B Whitney; Alison L Hill; Srisowmya Sanisetty; Pablo Penaloza-MacMaster; Jinyan Liu; Mayuri Shetty; Lily Parenteau; Crystal Cabral; Jennifer Shields; Stephen Blackmore; Jeffrey Y Smith; Amanda L Brinkman; Lauren E Peter; Sheeba I Mathew; Kaitlin M Smith; Erica N Borducchi; Daniel I S Rosenbloom; Mark G Lewis; Jillian Hattersley; Bei Li; Joseph Hesselgesser; Romas Geleziunas; Merlin L Robb; Jerome H Kim; Nelson L Michael; Dan H Barouch
Journal:  Nature       Date:  2014-07-20       Impact factor: 49.962

8.  Challenges in detecting HIV persistence during potentially curative interventions: a study of the Berlin patient.

Authors:  Steven A Yukl; Eli Boritz; Michael Busch; Christopher Bentsen; Tae-Wook Chun; Daniel Douek; Evelyn Eisele; Ashley Haase; Ya-Chi Ho; Gero Hütter; J Shawn Justement; Sheila Keating; Tzong-Hae Lee; Peilin Li; Danielle Murray; Sarah Palmer; Christopher Pilcher; Satish Pillai; Richard W Price; Meghan Rothenberger; Timothy Schacker; Janet Siliciano; Robert Siliciano; Elizabeth Sinclair; Matt Strain; Joseph Wong; Douglas Richman; Steven G Deeks
Journal:  PLoS Pathog       Date:  2013-05-09       Impact factor: 6.823

9.  Administration of vorinostat disrupts HIV-1 latency in patients on antiretroviral therapy.

Authors:  N M Archin; A L Liberty; A D Kashuba; S K Choudhary; J D Kuruc; A M Crooks; D C Parker; E M Anderson; M F Kearney; M C Strain; D D Richman; M G Hudgens; R J Bosch; J M Coffin; J J Eron; D J Hazuda; D M Margolis
Journal:  Nature       Date:  2012-07-25       Impact factor: 49.962

10.  Loss and recovery of genetic diversity in adapting populations of HIV.

Authors:  Pleuni S Pennings; Sergey Kryazhimskiy; John Wakeley
Journal:  PLoS Genet       Date:  2014-01-23       Impact factor: 5.917
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  13 in total

1.  Principles Governing Establishment versus Collapse of HIV-1 Cellular Spread.

Authors:  Jason M Hataye; Joseph P Casazza; Katharine Best; C Jason Liang; Taina T Immonen; David R Ambrozak; Samuel Darko; Amy R Henry; Farida Laboune; Frank Maldarelli; Daniel C Douek; Nicolas W Hengartner; Takuya Yamamoto; Brandon F Keele; Alan S Perelson; Richard A Koup
Journal:  Cell Host Microbe       Date:  2019-11-21       Impact factor: 21.023

2.  A passive-flow microfluidic device for imaging latent HIV activation dynamics in single T cells.

Authors:  Ramesh Ramji; Victor C Wong; Arvind K Chavali; Larisa M Gearhart; Kathryn Miller-Jensen
Journal:  Integr Biol (Camb)       Date:  2015-07-03       Impact factor: 2.192

3.  Different human resting memory CD4+ T cell subsets show similar low inducibility of latent HIV-1 proviruses.

Authors:  Kyungyoon J Kwon; Andrew E Timmons; Srona Sengupta; Francesco R Simonetti; Hao Zhang; Rebecca Hoh; Steven G Deeks; Janet D Siliciano; Robert F Siliciano
Journal:  Sci Transl Med       Date:  2020-01-29       Impact factor: 17.956

Review 4.  Mathematical Models of HIV Latency.

Authors:  Alison L Hill
Journal:  Curr Top Microbiol Immunol       Date:  2018       Impact factor: 4.291

5.  Rapid decline of HIV-1 DNA and RNA in infants starting very early antiretroviral therapy may pose a diagnostic challenge.

Authors:  Kirsten A Veldsman; Jean Maritz; Shahieda Isaacs; Mary G Katusiime; Anita Janse van Rensburg; Barbara Laughton; John W Mellors; Mark F Cotton; Gert U van Zyl
Journal:  AIDS       Date:  2018-03-13       Impact factor: 4.177

6.  NF-κB-Chromatin Interactions Drive Diverse Phenotypes by Modulating Transcriptional Noise.

Authors:  Victor C Wong; Victor L Bass; M Elise Bullock; Arvind K Chavali; Robin E C Lee; Walther Mothes; Suzanne Gaudet; Kathryn Miller-Jensen
Journal:  Cell Rep       Date:  2018-01-16       Impact factor: 9.423

Review 7.  Designing and Interpreting Limiting Dilution Assays: General Principles and Applications to the Latent Reservoir for Human Immunodeficiency Virus-1.

Authors:  Daniel I S Rosenbloom; Oliver Elliott; Alison L Hill; Timothy J Henrich; Janet M Siliciano; Robert F Siliciano
Journal:  Open Forum Infect Dis       Date:  2015-08-26       Impact factor: 3.835

8.  Immunological biomarkers predict HIV-1 viral rebound after treatment interruption.

Authors:  Jacob Hurst; Matthias Hoffmann; Matthew Pace; James P Williams; John Thornhill; Elizabeth Hamlyn; Jodi Meyerowitz; Chris Willberg; Kersten K Koelsch; Nicola Robinson; Helen Brown; Martin Fisher; Sabine Kinloch; David A Cooper; Mauro Schechter; Giuseppe Tambussi; Sarah Fidler; Abdel Babiker; Jonathan Weber; Anthony D Kelleher; Rodney E Phillips; John Frater
Journal:  Nat Commun       Date:  2015-10-09       Impact factor: 14.919

9.  Real-Time Predictions of Reservoir Size and Rebound Time during Antiretroviral Therapy Interruption Trials for HIV.

Authors:  Alison L Hill; Daniel I S Rosenbloom; Edward Goldstein; Emily Hanhauser; Daniel R Kuritzkes; Robert F Siliciano; Timothy J Henrich
Journal:  PLoS Pathog       Date:  2016-04-27       Impact factor: 6.823

10.  Distinct promoter activation mechanisms modulate noise-driven HIV gene expression.

Authors:  Arvind K Chavali; Victor C Wong; Kathryn Miller-Jensen
Journal:  Sci Rep       Date:  2015-12-15       Impact factor: 4.379
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