Literature DB >> 31753533

Mechanisms for Active Regulation of Biomolecular Condensates.

Johannes Söding1, David Zwicker2, Salma Sohrabi-Jahromi3, Marc Boehning4, Jan Kirschbaum2.   

Abstract

Liquid-liquid phase separation is a key organizational principle in eukaryotic cells, on par with intracellular membranes. It allows cells to concentrate specific proteins into condensates, increasing reaction rates and achieving switch-like regulation. We propose two active mechanisms that can explain how cells regulate condensate formation and size. In both, the cell regulates the activity of an enzyme, often a kinase, that adds post-translational modifications to condensate proteins. In enrichment inhibition, the enzyme enriches in the condensate and weakens interactions, as seen in stress granules (SGs), Cajal bodies, and P granules. In localization-induction, condensates form around immobilized enzymes that strengthen interactions, as observed in DNA repair, transmembrane signaling, and microtubule assembly. These models can guide studies into the many emerging roles of biomolecular condensates.
Copyright © 2019 Elsevier Ltd. All rights reserved.

Keywords:  Cajal bodies; DNA repair; membraneless organelles; size control; stress granules; synapsin

Mesh:

Substances:

Year:  2019        PMID: 31753533     DOI: 10.1016/j.tcb.2019.10.006

Source DB:  PubMed          Journal:  Trends Cell Biol        ISSN: 0962-8924            Impact factor:   20.808


  34 in total

Review 1.  Biomolecular Condensates in the Nucleus.

Authors:  Benjamin R Sabari; Alessandra Dall'Agnese; Richard A Young
Journal:  Trends Biochem Sci       Date:  2020-07-17       Impact factor: 13.807

2.  Evolved interactions stabilize many coexisting phases in multicomponent liquids.

Authors:  David Zwicker; Liedewij Laan
Journal:  Proc Natl Acad Sci U S A       Date:  2022-07-06       Impact factor: 12.779

3.  Probing Liquid-Liquid Phase Separation of RNA-Binding Proteins In Vitro and In Vivo.

Authors:  Stephanie Heinrich; Maria Hondele
Journal:  Methods Mol Biol       Date:  2022

Review 4.  Metabolic channeling: predictions, deductions, and evidence.

Authors:  Vidhi Pareek; Zhou Sha; Jingxuan He; Ned S Wingreen; Stephen J Benkovic
Journal:  Mol Cell       Date:  2021-09-16       Impact factor: 19.328

Review 5.  A framework for understanding the functions of biomolecular condensates across scales.

Authors:  Andrew S Lyon; William B Peeples; Michael K Rosen
Journal:  Nat Rev Mol Cell Biol       Date:  2020-11-09       Impact factor: 94.444

6.  JRAB/MICAL-L2 undergoes liquid-liquid phase separation to form tubular recycling endosomes.

Authors:  Ayuko Sakane; Taka-Aki Yano; Takayuki Uchihashi; Kazuki Horikawa; Yusuke Hara; Issei Imoto; Shusaku Kurisu; Hiroshi Yamada; Kohji Takei; Takuya Sasaki
Journal:  Commun Biol       Date:  2021-05-11

7.  Cavitation controls droplet sizes in elastic media.

Authors:  Estefania Vidal-Henriquez; David Zwicker
Journal:  Proc Natl Acad Sci U S A       Date:  2021-10-05       Impact factor: 11.205

8.  Assembly of higher-order SMN oligomers is essential for metazoan viability and requires an exposed structural motif present in the YG zipper dimer.

Authors:  Kushol Gupta; Ying Wen; Nisha S Ninan; Amanda C Raimer; Robert Sharp; Ashlyn M Spring; Kathryn L Sarachan; Meghan C Johnson; Gregory D Van Duyne; A Gregory Matera
Journal:  Nucleic Acids Res       Date:  2021-07-21       Impact factor: 16.971

9.  Controlling biomolecular condensates via chemical reactions.

Authors:  Jan Kirschbaum; David Zwicker
Journal:  J R Soc Interface       Date:  2021-06-30       Impact factor: 4.118

Review 10.  Human de novo purine biosynthesis.

Authors:  Vidhi Pareek; Anthony M Pedley; Stephen J Benkovic
Journal:  Crit Rev Biochem Mol Biol       Date:  2020-11-12       Impact factor: 8.250

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