Literature DB >> 31735123

Inhibition monitoring in veterinary molecular testing.

Lifang Yan1,2,3,4, Kathy L Toohey-Kurth1,2,3,4, Beate M Crossley1,2,3,4, Jianfa Bai1,2,3,4, Amy L Glaser1,2,3,4, Rebecca L Tallmadge1,2,3,4, Laura B Goodman1,2,3,4.   

Abstract

Many of the sample matrices typically used for veterinary molecular testing contain inhibitory factors that can potentially reduce analytic sensitivity or produce false-negative results by masking the signal produced by the nucleic acid target. Inclusion of internal controls in PCR-based assays is a valuable strategy not only for monitoring for PCR inhibitors, but also for monitoring nucleic acid extraction efficiency, and for identifying technology errors that may interfere with the ability of an assay to detect the intended target. The Laboratory Technology Committee of the American Association of Veterinary Laboratory Diagnosticians reviewed the different types of internal controls related to monitoring inhibition of PCR-based assays, and provides information here to encourage veterinary diagnostic laboratories to incorporate PCR internal control strategies as a routine quality management component of their molecular testing.

Keywords:  PCR inhibition; internal control; quality assurance; real-time PCR; veterinary molecular tests

Mesh:

Year:  2019        PMID: 31735123      PMCID: PMC7649546          DOI: 10.1177/1040638719889315

Source DB:  PubMed          Journal:  J Vet Diagn Invest        ISSN: 1040-6387            Impact factor:   1.279


  52 in total

1.  Anticoagulants interfere with PCR used to diagnose invasive aspergillosis.

Authors:  Marta E García; Jose L Blanco; Jesús Caballero; Domingo Gargallo-Viola
Journal:  J Clin Microbiol       Date:  2002-04       Impact factor: 5.948

2.  Effects of heparin on polymerase chain reaction for blood white cells.

Authors:  M Yokota; N Tatsumi; O Nathalang; T Yamada; I Tsuda
Journal:  J Clin Lab Anal       Date:  1999       Impact factor: 2.352

Review 3.  Validation of laboratory-developed molecular assays for infectious diseases.

Authors:  Eileen M Burd
Journal:  Clin Microbiol Rev       Date:  2010-07       Impact factor: 26.132

4.  Armored RNA as virus surrogate in a real-time reverse transcriptase PCR assay proficiency panel.

Authors:  S K Hietala; B M Crossley
Journal:  J Clin Microbiol       Date:  2006-01       Impact factor: 5.948

Review 5.  PCR inhibitors - occurrence, properties and removal.

Authors:  C Schrader; A Schielke; L Ellerbroek; R Johne
Journal:  J Appl Microbiol       Date:  2012-07-24       Impact factor: 3.772

Review 6.  Inhibition and facilitation of nucleic acid amplification.

Authors:  I G Wilson
Journal:  Appl Environ Microbiol       Date:  1997-10       Impact factor: 4.792

7.  Comparison of RNA extraction and real-time reverse transcription polymerase chain reaction methods for the detection of Porcine reproductive and respiratory syndrome virus in porcine oral fluid specimens.

Authors:  Wayne A Chittick; Wendy R Stensland; John R Prickett; Erin L Strait; Karen Harmon; Kyoung-Jin Yoon; Chong Wang; Jeffrey J Zimmerman
Journal:  J Vet Diagn Invest       Date:  2011-03       Impact factor: 1.279

8.  A novel simple one-step single-tube RT-duplex PCR method with an internal control for detection of bovine viral diarrhoea virus in bulk milk, blood, and follicular fluid samples.

Authors:  Sung G Kim; Edward J Dubovi
Journal:  Biologicals       Date:  2003-06       Impact factor: 1.856

9.  Monitoring of inhibitors of enzymatic amplification in polymerase chain reaction and evaluation of efficacy of RNA extraction for the detection of hepatitis C virus using the internal control.

Authors:  H Miyachi; A Masukawa; T Ohshima; H Fusegawa; T Hirose; C Impraim; Y Ando
Journal:  Clin Chem Lab Med       Date:  1998-08       Impact factor: 3.694

10.  Identification of new reference genes for the normalisation of canine osteoarthritic joint tissue transcripts from microarray data.

Authors:  Lindsey J Maccoux; Dylan N Clements; Fiona Salway; Philip J R Day
Journal:  BMC Mol Biol       Date:  2007-07-25       Impact factor: 2.946

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  4 in total

1.  Best practices for performance of real-time PCR assays in veterinary diagnostic laboratories.

Authors:  Kathy L Toohey-Kurth; Donna M Mulrooney; Susanne Hinkley; Mary Lea Killian; Janice C Pedersen; Mangkey A Bounpheng; Roman Pogranichniy; Steve Bolin; Roger Maes; Rebecca L Tallmadge; Laura B Goodman; Beate M Crossley
Journal:  J Vet Diagn Invest       Date:  2020-09-30       Impact factor: 1.279

2.  Suggested guidelines for validation of real-time PCR assays in veterinary diagnostic laboratories.

Authors:  Kathy Toohey-Kurth; Monica M Reising; Rebecca L Tallmadge; Laura B Goodman; Jianfa Bai; Steven R Bolin; Janice C Pedersen; Mangkey A Bounpheng; Roman M Pogranichniy; Jane Christopher-Hennings; Mary Lea Killian; Donna M Mulrooney; Roger Maes; Shri Singh; Beate M Crossley
Journal:  J Vet Diagn Invest       Date:  2020-09-28       Impact factor: 1.279

3.  Porcine reproductive and respiratory syndrome virus whole-genome sequencing efficacy with field clinical samples using a poly(A)-tail viral genome purification method.

Authors:  Carl A Gagnon; Christian Lalonde; Chantale Provost
Journal:  J Vet Diagn Invest       Date:  2020-08-28       Impact factor: 1.279

4.  An Assessment of Diagnostic Assays and Sample Types in the Detection of an Attenuated Genotype 5 African Swine Fever Virus in European Pigs over a 3-Month Period.

Authors:  Karyn A Havas; Andrey E Gogin; Julia V Basalaeva; Irina P Sindryakova; Olga L Kolbasova; Ilya A Titov; Valentina M Lyska; Sergey Y Morgunov; Mikhail E Vlasov; Timofey A Sevskikh; Elena Y Pivova; Dmitry A Kudrjashov; Kent Doolittle; Silvia Zimmerman; Wendy Witbeck; Luis G Gimenez-Lirola; Joel Nerem; Gordon D Spronk; Jeffrey J Zimmerman; Alexey D Sereda
Journal:  Pathogens       Date:  2022-03-26
  4 in total

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