| Literature DB >> 31731482 |
Lars Henrik Jensen1,2,3, René Olesen4, Lone Noergaard Petersen5, Anders Kindberg Boysen4, Rikke Fredslund Andersen3,6, Jan Lindebjerg2,3,7, Lise Nottelmann1,2,3, Caroline Emilie Brenner Thomsen1,2,3, Birgitte Mayland Havelund1,2,3, Anders Jakobsen1,2,3, Torben Frøstrup Hansen1,2,3.
Abstract
There is a need for biomarkers to improve the clinical benefit from systemic treatment of colorectal cancer. We designed a prospective, clinical study where patients receiving regorafenib as last-line treatment had sequential blood samples drawn. Effect and toxicity was monitored. The primary clinical endpoint was progression free survival (PFS). Cell-free circulating tumor (ct) DNA was measured as either the fraction with Neuropeptide Y (NPY) methylated DNA or KRAS/NRAS/BRAF mutated ctDNA. One hundred patients were included from three Danish centers. Among 95 patients who received regorafenib for at least two weeks, the median PFS was 2.1 months (95% confidence interval (CI) 1.8-3.3) and the median overall survival (OS) was 5.2 months (95% CI 4.3-6.5). Grade 3-4 toxicities were reported 51 times, most frequently hypertension, hand-food syndrome, and skin rash. In the biomarker population of 91 patients, 49 could be monitored using mutated DNA and 90 using methylated DNA. There was a strong correlation between mutated and methylated DNA. The median survival for patients with a level of methylated ctDNA above the median was 4.3 months compared to 7.6 months with ctDNA below the median, p < 0.001. The median time from increasing methylated ctDNA to disease progression was 1.64 months (range 0.46-8.38 months). In conclusion, NPY methylated ctDNA was a universal liquid biopsy marker in colorectal cancer patients treated with regorafenib. High baseline levels correlated with short survival and changes during treatment may predict early effect and later progression. We suggest plasma NPY methylation analysis as an easy and universally applicable method for longitudinal monitoring of ctDNA in metastatic colorectal cancer patients.Entities:
Keywords: NPY methylation; biomarker; colorectal cancer; ctDNA; regorafenib
Year: 2019 PMID: 31731482 PMCID: PMC6896074 DOI: 10.3390/cancers11111649
Source DB: PubMed Journal: Cancers (Basel) ISSN: 2072-6694 Impact factor: 6.639
Figure 1Patient Flow with an illustration of the intention-to-treat, safety, and Response evaluation criteria in solid tumors (RECIST) population.
Patient characteristics for the intention-to-treat population of 100 patients. NR = not reported.
| Characteristic | Categories | Data |
|---|---|---|
| Age | Median (min–max), years | 65 (28–77) |
| Time since first chemotherapy for metastatic colorectal cancer | Median (min–max), years | 1.8 (0.4–10.9) |
|
| ||
| Sex | Female | 47 |
| Male | 53 | |
| Localization of primary tumor | Right colon | 30 |
| Left colon | 31 | |
| Rectum | 35 | |
| NR | 4 | |
| No of metastatic sites | 1–2 | 54 |
| 2+ | 46 | |
| Performance status | 0 | 43 |
| 1 | 54 | |
| NR | 3 | |
| Treatment, adjuvant | Fluoropyrimidine monotherapy | 36 |
| Fluoropyrimidine and oxaliplatin | 30 | |
| Treatment, metastatic | Fluoropyrimidine | 96 |
| Oxaliplatin | 87 | |
| Irinotecan | 98 | |
| Bevacizumab | 90 | |
| EGFR inhibitor | 33 | |
| Other | 5 | |
| NR | 2 | |
| Mutation in tumor tissue |
| 51 |
|
| 4 | |
|
| 6 | |
| Wild-type or NR | 39 |
Toxicity analysis of 95 patients evaluable for toxicity. The most common toxicities are listed according to frequency of minor toxicity, grade 1–2, and major toxicity, grade 3–4.
| Adverse Event | Grade 1–2 | Grade 3–4 |
|---|---|---|
| Hypertension | 31 (33%) | 8 (8%) |
| Hand-foot-skin reaction | 48 (51%) | 6 (6%) |
| Rash | 20 (21%) | 6 (6%) |
| Fatigue | 77 (81%) | 4 (4%) |
| Diarrhea | 35 (37%) | 3 (3%) |
| Anorexia | 60 (63%) | 2 (2%) |
| Oral mucositis | 43 (45%) | 2 (2%) |
| Nausea | 35 (37%) | 1 (1%) |
| Voice changes | 66 (69%) | 0 (0%) |
| Conjunctivitis | 19 (20%) | 0 (0%) |
| Bleeding | 16 (17%) | 0 (0%) |
| Other toxicites | 65 (68%) | 19 (20%) |
Figure 2Kaplan–Meier Plots describing progression free survival (A) and overall survival (B) for the entire cohort.
Clinical Outcomes. Response rates are given for 75 patients evaluable for response. PFS = progression free survival at 2 months is the fraction of all patients alive without progression at the radiological evaluation after two cycles. Median PFS and OS = overall survival is given for the intention-to-treat population and reported using the Kaplan–Meier method.
| Endpoint | Categories |
| Data | 95% CI |
|---|---|---|---|---|
| Response rate | Stable disease | 45 | 60% | 48–71% |
| Progressive disease | 30 | 40% | 29–52% | |
| PFS | At 2 months | 46 | 46% | 36–56% |
| Median | 100 | 2.1 months | 1.8–3.4 | |
| OS | Median | 100 | 5.2 months | 4.3–6.5 |
Figure 3Correlation between baseline cell-free circulating tumor specific DNA (ctDNA) in the RAS mutation cohort measured by mutation or methylation, Spearman’s rho = 0.82, p < 0.001, n = 42. VAF = Variant allele frequency, dashed line is the linear regression line with 95% confidence interval in grey.
Patient characteristics of the biomarker population. Correlation between patient characteristics and the mean level of circulating tumor DNA (ctDNA) at baseline determined either by RAS/RAF mutation (Mut ctDNA) or NPY methylation (Meth ctDNA) in the biomarker population, n = number, CI = confidence interval. In 82 patients a baseline plasma sample was available and the correlations are based on these patients.
| Characteristic | Categories | Clinical Trial, | Mut ctDNA | Meth ctDNA | ||||
|---|---|---|---|---|---|---|---|---|
|
| Mean % (95%CI) |
| Mean % (95%CI) | |||||
| Age | Median (min–max), years 65 (28–77) | 100 | 46 | 25 (19–32) | 0.19 | 82 | 25 (20–30) | 0.24 |
| Sex | Female | 47 | 21 | 25 (14–36) | 40 | 21 (14–27) | ||
| Male | 53 | 25 | 25 (18–33) | 0.77 | 41 | 30 (22–37) | 0.11 | |
| Localization of primary tumor | Right colon | 30 | 18 | 26 (16–37) | 24 | 30 (19–44) | ||
| Left colon | 31 | 14 | 27 (12–41) | 24 | 21 (10–31) | |||
| Rectum | 35 | 13 | 23 (12–35) | 0.98 | 31 | 23 (17–30) | 0.32 | |
| Performance status | 0 | 43 | 22 | 24 (15–33) | 34 | 21 (15–30) | ||
| 1 | 54 | 24 | 27 (17–36) | 0.96 | 46 | 27 (19–34) | 0.58 | |
Figure 4Kaplan–Meier Plots describing overall survival for patients with a level of methylated circulating tumor (ct) DNA above or below the median. Median survival was 7.6 vs. 4.3 months, p < 0.001.
Figure 5(A) methylated circulating tumor (ct) ctDNA and (B) mutated ctDNA. Baseline and five serial plasma samples were available from 40 and 23 patients, respectively. The boxplots of medians show the longitudinal changes of normalized values of the fraction of ctDNA.