Literature DB >> 25896958

Controls to validate plasma samples for cell free DNA quantification.

Niels Pallisgaard1, Karen-Lise Garm Spindler2, Rikke Fredslund Andersen3, Ivan Brandslund4, Anders Jakobsen5.   

Abstract

Recent research has focused on the utility of cell free DNA (cfDNA) in serum and plasma for clinical application, especially in oncology. The literature holds promise of cfDNA as a valuable tumour marker to be used for treatment selection, monitoring and follow-up. The results, however, are diverging due to methodological differences with lack of standardisation and definition of sensitivity. The new biological information has not yet come into routine use. The present study presents external standardisation by spiking with non-human DNA fragments to control for loss of DNA during sample preparation and measurement. It also suggests a method to control for admixture of DNA from normal lymphocytes by utilizing the unique immunoglobulin gene rearrangement in the B-cells. The results show that this approach improves the quality of the analysis and lowers the risk of falsely increased values. In conclusion we suggest a new method to improve the accuracy of cfDNA measurements easily incorporated in the current technology.
Copyright © 2015 Elsevier B.V. All rights reserved.

Entities:  

Keywords:  Lymphocyte DNA; Quality control; cfDNA; qPCR

Mesh:

Substances:

Year:  2015        PMID: 25896958     DOI: 10.1016/j.cca.2015.04.015

Source DB:  PubMed          Journal:  Clin Chim Acta        ISSN: 0009-8981            Impact factor:   3.786


  22 in total

1.  Total cell-free DNA measurement in metastatic colorectal cancer with a fast and easy direct fluorescent assay.

Authors:  Louise Bach Callesen; Brita Singers Sørensen; Niels Pallisgaard; Ina Grønkjær Laugesen; Anders Kindberg Boysen; Karen-Lise Garm Spindler
Journal:  Mol Clin Oncol       Date:  2022-01-17

2.  Early Change in FDG-PET Signal and Plasma Cell-Free DNA Level Predicts Erlotinib Response in EGFR Wild-Type NSCLC Patients.

Authors:  Anne Winther-Larsen; Joan Fledelius; Christina Demuth; Catharina M Bylov; Peter Meldgaard; Boe S Sorensen
Journal:  Transl Oncol       Date:  2016-10-29       Impact factor: 4.243

3.  Development and Evaluation of a Duplex Real-Time PCR Assay With a Novel Internal Standard for Precise Quantification of Plasma DNA.

Authors:  Dan Chen; Shiyang Pan; Erfu Xie; Li Gao; Huaguo Xu; Wenying Xia; Ting Xu; Peijun Huang
Journal:  Ann Lab Med       Date:  2017-01       Impact factor: 3.464

4.  Correlation between circulating mutant DNA and metabolic tumour burden in advanced non-small cell lung cancer patients.

Authors:  Anne Winther-Larsen; Christina Demuth; Joan Fledelius; Anne Tranberg Madsen; Karin Hjorthaug; Peter Meldgaard; Boe Sandahl Sorensen
Journal:  Br J Cancer       Date:  2017-07-06       Impact factor: 7.640

5.  Quantification of Cell-Free HER-2 DNA in Plasma from Breast Cancer Patients: Sensitivity for Detection of Metastatic Recurrence and Gene Amplification.

Authors:  Patricia Diana Sørensen; Rikke Fredslund Andersen; Niels Pallisgaard; Jonna Skov Madsen; Erik Hugger Jakobsen; Ivan Brandslund
Journal:  J Circ Biomark       Date:  2015-08-31

6.  The prognostic value of simultaneous tumor and serum RAS/RAF mutations in localized colon cancer.

Authors:  Caroline Emilie B Thomsen; Ane Lindegaard Appelt; Rikke Fredslund Andersen; Jan Lindebjerg; Lars Henrik Jensen; Anders Jakobsen
Journal:  Cancer Med       Date:  2017-04-04       Impact factor: 4.452

7.  Correlation between circulating cell-free PIK3CA tumor DNA levels and treatment response in patients with PIK3CA-mutated metastatic breast cancer.

Authors:  Annette R Kodahl; Sidse Ehmsen; Niels Pallisgaard; Anne M B Jylling; Jeanette D Jensen; Anne-Vibeke Laenkholm; Ann S Knoop; Henrik J Ditzel
Journal:  Mol Oncol       Date:  2018-05-04       Impact factor: 6.603

8.  Circulating tumor DNA in early response assessment and monitoring of advanced colorectal cancer treated with a multi-kinase inhibitor.

Authors:  Caroline Vandeputte; Pashalina Kehagias; Hakim El Housni; Lieveke Ameye; Jean-François Laes; Christine Desmedt; Christos Sotiriou; Amélie Deleporte; Francesco Puleo; Karen Geboes; Thierry Delaunoit; Gauthier Demolin; Marc Peeters; Lionel D'Hondt; Jos Janssens; Javier Carrasco; Raphaël Marechal; Maria Gomez Galdon; Pierre Heimann; Marianne Paesmans; Patrick Flamen; Alain Hendlisz
Journal:  Oncotarget       Date:  2018-04-03

9.  Liquid biopsy in mice bearing colorectal carcinoma xenografts: gateways regulating the levels of circulating tumor DNA (ctDNA) and miRNA (ctmiRNA).

Authors:  Jessica Gasparello; Matteo Allegretti; Elisa Tremante; Enrica Fabbri; Carla Azzurra Amoreo; Paolo Romania; Elisa Melucci; Katia Messana; Monica Borgatti; Patrizio Giacomini; Roberto Gambari; Alessia Finotti
Journal:  J Exp Clin Cancer Res       Date:  2018-06-26

10.  The Clinical Value of Measuring Circulating HPV DNA during Chemo-Radiotherapy in Squamous Cell Carcinoma of the Anus.

Authors:  Anna C Lefèvre; Niels Pallisgaard; Camilla Kronborg; Karen L Wind; Søren R P Krag; Karen-Lise G Spindler
Journal:  Cancers (Basel)       Date:  2021-05-18       Impact factor: 6.639

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