Literature DB >> 31722068

Structure and function relationships in mammalian DNA polymerases.

Nicole M Hoitsma1, Amy M Whitaker1, Matthew A Schaich1, Mallory R Smith1, Max S Fairlamb1, Bret D Freudenthal2.   

Abstract

DNA polymerases are vital for the synthesis of new DNA strands. Since the discovery of DNA polymerase I in Escherichia coli, a diverse library of mammalian DNA polymerases involved in DNA replication, DNA repair, antibody generation, and cell checkpoint signaling has emerged. While the unique functions of these DNA polymerases are differentiated by their association with accessory factors and/or the presence of distinctive catalytic domains, atomic resolution structures of DNA polymerases in complex with their DNA substrates have revealed mechanistic subtleties that contribute to their specialization. In this review, the structure and function of all 15 mammalian DNA polymerases from families B, Y, X, and A will be reviewed and discussed with special emphasis on the insights gleaned from recently published atomic resolution structures.

Entities:  

Keywords:  DNA polymerase; DNA repair; DNA synthesis; Replication; Structural biology

Mesh:

Substances:

Year:  2019        PMID: 31722068      PMCID: PMC7050493          DOI: 10.1007/s00018-019-03368-y

Source DB:  PubMed          Journal:  Cell Mol Life Sci        ISSN: 1420-682X            Impact factor:   9.261


  287 in total

1.  Crystal structure of a DinB family error-prone DNA polymerase from Sulfolobus solfataricus.

Authors:  L F Silvian; E A Toth; P Pham; M F Goodman; T Ellenberger
Journal:  Nat Struct Biol       Date:  2001-11

2.  Exonuclease proofreading by human mitochondrial DNA polymerase.

Authors:  A A Johnson; K A Johnson
Journal:  J Biol Chem       Date:  2001-07-26       Impact factor: 5.157

3.  Structure of the replicating complex of a pol alpha family DNA polymerase.

Authors:  M C Franklin; J Wang; T A Steitz
Journal:  Cell       Date:  2001-06-01       Impact factor: 41.582

4.  Structures of mismatch replication errors observed in a DNA polymerase.

Authors:  Sean J Johnson; Lorena S Beese
Journal:  Cell       Date:  2004-03-19       Impact factor: 41.582

Review 5.  Replication of animal mitochondrial DNA.

Authors:  D A Clayton
Journal:  Cell       Date:  1982-04       Impact factor: 41.582

Review 6.  Clinical and molecular features of POLG-related mitochondrial disease.

Authors:  Jeffrey D Stumpf; Russell P Saneto; William C Copeland
Journal:  Cold Spring Harb Perspect Biol       Date:  2013-04-01       Impact factor: 10.005

7.  Who Is Leading the Replication Fork, Pol ε or Pol δ?

Authors:  Peter M J Burgers; Dmitry Gordenin; Thomas A Kunkel
Journal:  Mol Cell       Date:  2016-02-18       Impact factor: 17.970

Review 8.  DNA polymerase θ (POLQ), double-strand break repair, and cancer.

Authors:  Richard D Wood; Sylvie Doublié
Journal:  DNA Repair (Amst)       Date:  2016-05-14

9.  Time-lapse crystallography snapshots of a double-strand break repair polymerase in action.

Authors:  Joonas A Jamsen; William A Beard; Lars C Pedersen; David D Shock; Andrea F Moon; Juno M Krahn; Katarzyna Bebenek; Thomas A Kunkel; Samuel H Wilson
Journal:  Nat Commun       Date:  2017-08-15       Impact factor: 14.919

10.  Mechanism for priming DNA synthesis by yeast DNA polymerase α.

Authors:  Rajika L Perera; Rubben Torella; Sebastian Klinge; Mairi L Kilkenny; Joseph D Maman; Luca Pellegrini
Journal:  Elife       Date:  2013-04-02       Impact factor: 8.140

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  7 in total

1.  Mechanism of Deoxyguanosine Diphosphate Insertion by Human DNA Polymerase β.

Authors:  Fausto A Varela; Bret D Freudenthal
Journal:  Biochemistry       Date:  2021-01-21       Impact factor: 3.162

2.  Mechanism of nucleotide discrimination by the translesion synthesis polymerase Rev1.

Authors:  Tyler M Weaver; Timothy H Click; Thu H Khoang; M Todd Washington; Pratul K Agarwal; Bret D Freudenthal
Journal:  Nat Commun       Date:  2022-05-24       Impact factor: 17.694

Review 3.  History of DNA polymerase β X-ray crystallography.

Authors:  Amy M Whitaker; Bret D Freudenthal
Journal:  DNA Repair (Amst)       Date:  2020-09

Review 4.  Function and molecular mechanisms of APE2 in genome and epigenome integrity.

Authors:  Yunfeng Lin; Anne McMahon; Garrett Driscoll; Sharon Bullock; Jianjun Zhao; Shan Yan
Journal:  Mutat Res Rev Mutat Res       Date:  2020-11-16       Impact factor: 5.657

Review 5.  Conformational Dynamics of DNA Polymerases Revealed at the Single-Molecule Level.

Authors:  David P Millar
Journal:  Front Mol Biosci       Date:  2022-02-25

6.  Noncanonical prokaryotic X family DNA polymerases lack polymerase activity and act as exonucleases.

Authors:  Maria Prostova; Evgeniy Shilkin; Alexandra A Kulikova; Alena Makarova; Sergei Ryazansky; Andrey Kulbachinskiy
Journal:  Nucleic Acids Res       Date:  2022-06-24       Impact factor: 19.160

Review 7.  RNA polymerase pausing, stalling and bypass during transcription of damaged DNA: from molecular basis to functional consequences.

Authors:  Aleksei Agapov; Anna Olina; Andrey Kulbachinskiy
Journal:  Nucleic Acids Res       Date:  2022-04-08       Impact factor: 16.971

  7 in total

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