Literature DB >> 31720844

Study of molecular interactions by hydrogen bond of charged forms of makaluvamines and complex stability with H2O and glutamic acid (Glu Ac) by the theory of the functional of density (B3LYP).

Sékou Diomandé1, Affoué Lucie Bédé1, Soleymane Koné2, El-Hadji Sawaliho Bamba1.   

Abstract

This work was undertaken to understand the mode of interaction of makaluvamines, a class of marine pyrroloiminoquinone alkaloids isolated from sponges of the genus Zyzzya, used in the treatment of several human cancer cell lines. This analysis was done by the quantum chemistry method. First, we used electrostatic potential (ESP) to reveal the different sites that accept and donate hydrogen bonds (HB) of charged forms (protonated and methylated) of makaluvamines (at level B3LYP/6-311++G(d,p)). In a second step, we studied the interactions by hydrogen bond between these molecules and water molecule on the one hand (at level B3LYP/6-311++G(d,p)) and on the other hand glutamic acid a protein residue of topoisomerase II (at level B3LYP/6-31+G(d,p)). Finally, we calculated the corrected BSSE interaction energies and estimated the relative stability of the formed complexes.

Entities:  

Keywords:  Complex; Electrostatic potential (ESP); Hydrogen bond (HB); Interaction energy; Makaluvamines

Year:  2019        PMID: 31720844     DOI: 10.1007/s00894-019-4231-0

Source DB:  PubMed          Journal:  J Mol Model        ISSN: 0948-5023            Impact factor:   1.810


  12 in total

1.  Quantifying intermolecular interactions: guidelines for the molecular recognition toolbox.

Authors:  Christopher A Hunter
Journal:  Angew Chem Int Ed Engl       Date:  2004-10-11       Impact factor: 15.336

2.  Makaluvamines H-M and damirone C from the pohnpeian sponge Zyzzya fuliginosa.

Authors:  E W Schmidt; M K Harper; D J Faulkner
Journal:  J Nat Prod       Date:  1995-12       Impact factor: 4.050

3.  Makaluvamine N: a new pyrroloiminoquinone from Zyzzya fuliginosa.

Authors:  D A Venables; G P Concepción; S S Matsumoto; L R Barrows; C M Ireland
Journal:  J Nat Prod       Date:  1997-04       Impact factor: 4.050

4.  Makaluvamines, marine natural products, are active anti-cancer agents and DNA topo II inhibitors.

Authors:  L R Barrows; D C Radisky; B R Copp; D S Swaffar; R A Kramer; R L Warters; C M Ireland
Journal:  Anticancer Drug Des       Date:  1993-10

5.  Estimates of worldwide burden of cancer in 2008: GLOBOCAN 2008.

Authors:  Jacques Ferlay; Hai-Rim Shin; Freddie Bray; David Forman; Colin Mathers; Donald Maxwell Parkin
Journal:  Int J Cancer       Date:  2010-12-15       Impact factor: 7.396

6.  Makaluvamine P, a new cytotoxic pyrroloiminoquinone from Zyzzya cf. fuliginosa.

Authors:  A Casapullo; A Cutignano; I Bruno; G Bifulco; C Debitus; L Gomez-Paloma; R Riccio
Journal:  J Nat Prod       Date:  2001-10       Impact factor: 4.050

7.  In vitro and in vivo anticancer activity of novel synthetic makaluvamine analogues.

Authors:  Wei Wang; Elizabeth R Rayburn; Sadanandan E Velu; Dwayaja H Nadkarni; Srinivasan Murugesan; Ruiwen Zhang
Journal:  Clin Cancer Res       Date:  2009-05-15       Impact factor: 12.531

8.  Analogs of the marine alkaloid makaluvamines: synthesis, topoisomerase II inhibition, and anticancer activity.

Authors:  Bidhan A Shinkre; Kevin P Raisch; Liming Fan; Sadanandan E Velu
Journal:  Bioorg Med Chem Lett       Date:  2007-02-25       Impact factor: 2.823

Review 9.  Bis and tris indole alkaloids from marine organisms: new leads for drug discovery.

Authors:  Leena Gupta; Archna Talwar; Prem M S Chauhan
Journal:  Curr Med Chem       Date:  2007       Impact factor: 4.530

10.  The nicotinic pharmacophore: thermodynamics of the hydrogen-bonding complexation of nicotine, nornicotine, and models.

Authors:  Jérôme Graton; Michel Berthelot; Jean-François Gal; Christian Laurence; Jacques Lebreton; Jean-Yves Le Questel; Pierre-Charles Maria; Richard Robins
Journal:  J Org Chem       Date:  2003-10-17       Impact factor: 4.354

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