Literature DB >> 31711756

Cryo-EM Structures of Centromeric Tri-nucleosomes Containing a Central CENP-A Nucleosome.

Yoshimasa Takizawa1, Cheng-Han Ho2, Hiroaki Tachiwana3, Hideyuki Matsunami4, Wataru Kobayashi5, Midori Suzuki6, Yasuhiro Arimura7, Tetsuya Hori8, Tatsuo Fukagawa8, Melanie D Ohi9, Matthias Wolf10, Hitoshi Kurumizaka11.   

Abstract

The histone H3 variant CENP-A is a crucial epigenetic marker for centromere specification. CENP-A forms a characteristic nucleosome and dictates the higher-order configuration of centromeric chromatin. However, little is known about how the CENP-A nucleosome affects the architecture of centromeric chromatin. In this study, we reconstituted tri-nucleosomes mimicking a centromeric nucleosome arrangement containing the CENP-A nucleosome, and determined their 3D structures by cryoelectron microscopy. The H3-CENP-A-H3 tri-nucleosomes adopt an untwisted architecture, with an outward-facing linker DNA path between nucleosomes. This is distinct from the H3-H3-H3 tri-nucleosome architecture, with an inward-facing DNA path. Intriguingly, the untwisted architecture may allow the CENP-A nucleosome to be exposed to the solvent in the condensed chromatin model. These results provide a structural basis for understanding the 3D configuration of CENP-A-containing chromatin, and may explain how centromeric proteins can specifically target the CENP-A nucleosomes buried in robust amounts of H3 nucleosomes in centromeres.
Copyright © 2019 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  CENP-A; centromere; chromatin; cryo-EM; histone variant; nucleosome

Year:  2019        PMID: 31711756     DOI: 10.1016/j.str.2019.10.016

Source DB:  PubMed          Journal:  Structure        ISSN: 0969-2126            Impact factor:   5.006


  14 in total

1.  Phase-plate cryo-EM structure of the Widom 601 CENP-A nucleosome core particle reveals differential flexibility of the DNA ends.

Authors:  Ramachandran Boopathi; Radostin Danev; Maryam Khoshouei; Seyit Kale; Sunil Nahata; Lorrie Ramos; Dimitar Angelov; Stefan Dimitrov; Ali Hamiche; Carlo Petosa; Jan Bednar
Journal:  Nucleic Acids Res       Date:  2020-06-04       Impact factor: 16.971

2.  Chromatin, stacked at the centromere.

Authors:  Katrina V Good; Juan Ausió
Journal:  Nat Struct Mol Biol       Date:  2022-04       Impact factor: 15.369

3.  Surprising Twists in Nucleosomal DNA with Implication for Higher-order Folding.

Authors:  Stefjord Todolli; Robert T Young; Abigail S Watkins; Antonio Bu Sha; John Yager; Wilma K Olson
Journal:  J Mol Biol       Date:  2021-06-28       Impact factor: 6.151

Review 4.  Guarding the Genome: CENP-A-Chromatin in Health and Cancer.

Authors:  Megan A Mahlke; Yael Nechemia-Arbely
Journal:  Genes (Basel)       Date:  2020-07-16       Impact factor: 4.096

5.  CENP-A nucleosome-a chromatin-embedded pedestal for the centromere: lessons learned from structural biology.

Authors:  Ahmad Ali-Ahmad; Nikolina Sekulić
Journal:  Essays Biochem       Date:  2020-09-04       Impact factor: 8.000

Review 6.  Job Opening for Nucleosome Mechanic: Flexibility Required.

Authors:  Mary Pitman; Daniël P Melters; Yamini Dalal
Journal:  Cells       Date:  2020-03-01       Impact factor: 6.600

7.  Conserved roles of chromatin remodellers in cohesin loading onto chromatin.

Authors:  Sofía Muñoz; Francesca Passarelli; Frank Uhlmann
Journal:  Curr Genet       Date:  2020-04-10       Impact factor: 3.886

8.  Global histone protein surface accessibility in yeast indicates a uniformly loosely packed genome with canonical nucleosomes.

Authors:  Luke T Marr; Josefina Ocampo; David J Clark; Jeffrey J Hayes
Journal:  Epigenetics Chromatin       Date:  2021-01-11       Impact factor: 4.954

Review 9.  Structural studies of functional nucleosome complexes with transacting factors.

Authors:  Hitoshi Kurumizaka
Journal:  Proc Jpn Acad Ser B Phys Biol Sci       Date:  2022       Impact factor: 3.493

10.  Stable inheritance of CENP-A chromatin: Inner strength versus dynamic control.

Authors:  Sreyoshi Mitra; Bharath Srinivasan; Lars E T Jansen
Journal:  J Cell Biol       Date:  2020-10-05       Impact factor: 10.539

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