Literature DB >> 35013027

Structural studies of functional nucleosome complexes with transacting factors.

Hitoshi Kurumizaka1.   

Abstract

In eukaryotic cells, the genomic DNA is hierarchically organized into chromatin. Chromatin structures and dynamics influence all nuclear functions that are guided by DNA, and thus regulate gene expression. Chromatin structure aberrations cause various health issues, such as cancer, lifestyle-related diseases, mental disorders, infertility, congenital diseases, and infectious diseases. Many studies have unveiled the fundamental features and the heterogeneity of the nucleosome, which is the basic repeating unit of chromatin. The nucleosome is the highly conserved primary chromatin architecture in eukaryotes, but it also has structural versatility. Therefore, analyses of these primary chromatin structures will clarify the higher-order chromatin architecture. This review focuses on structural and functional studies of nucleosomes, based on our research accomplishments.

Entities:  

Keywords:  chromatin; epigenetics; histones; nucleosome; structure; transcription

Mesh:

Substances:

Year:  2022        PMID: 35013027      PMCID: PMC8795532          DOI: 10.2183/pjab.98.001

Source DB:  PubMed          Journal:  Proc Jpn Acad Ser B Phys Biol Sci        ISSN: 0386-2208            Impact factor:   3.493


  84 in total

1.  Crystal structures of histone Sin mutant nucleosomes reveal altered protein-DNA interactions.

Authors:  Uma M Muthurajan; Yunhe Bao; Lawrence J Forsberg; Rajeswari S Edayathumangalam; Pamela N Dyer; Cindy L White; Karolin Luger
Journal:  EMBO J       Date:  2004-01-22       Impact factor: 11.598

2.  Structural and functional analyses of nucleosome complexes with mouse histone variants TH2a and TH2b, involved in reprogramming.

Authors:  Sivaraman Padavattan; Toshie Shinagawa; Kazuya Hasegawa; Takashi Kumasaka; Shunsuke Ishii; Thirumananseri Kumarevel
Journal:  Biochem Biophys Res Commun       Date:  2015-07-17       Impact factor: 3.575

3.  Chromatin structure: a repeating unit of histones and DNA.

Authors:  R D Kornberg
Journal:  Science       Date:  1974-05-24       Impact factor: 47.728

4.  Mechanisms of OCT4-SOX2 motif readout on nucleosomes.

Authors:  Alicia K Michael; Ralph S Grand; Luke Isbel; Simone Cavadini; Zuzanna Kozicka; Georg Kempf; Richard D Bunker; Andreas D Schenk; Alexandra Graff-Meyer; Ganesh R Pathare; Joscha Weiss; Syota Matsumoto; Lukas Burger; Dirk Schübeler; Nicolas H Thomä
Journal:  Science       Date:  2020-04-23       Impact factor: 47.728

5.  Human cGAS catalytic domain has an additional DNA-binding interface that enhances enzymatic activity and liquid-phase condensation.

Authors:  Wei Xie; Lodoe Lama; Carolina Adura; Daisuke Tomita; J Fraser Glickman; Thomas Tuschl; Dinshaw J Patel
Journal:  Proc Natl Acad Sci U S A       Date:  2019-05-29       Impact factor: 11.205

6.  Crystal structure and stable property of the cancer-associated heterotypic nucleosome containing CENP-A and H3.3.

Authors:  Yasuhiro Arimura; Kazuyoshi Shirayama; Naoki Horikoshi; Risa Fujita; Hiroyuki Taguchi; Wataru Kagawa; Tatsuo Fukagawa; Geneviève Almouzni; Hitoshi Kurumizaka
Journal:  Sci Rep       Date:  2014-11-19       Impact factor: 4.379

7.  The allosteric activation of cGAS underpins its dynamic signaling landscape.

Authors:  Richard M Hooy; Jungsan Sohn
Journal:  Elife       Date:  2018-10-08       Impact factor: 8.140

8.  The CENP-A centromere targeting domain facilitates H4K20 monomethylation in the nucleosome by structural polymorphism.

Authors:  Yasuhiro Arimura; Hiroaki Tachiwana; Hiroki Takagi; Tetsuya Hori; Hiroshi Kimura; Tatsuo Fukagawa; Hitoshi Kurumizaka
Journal:  Nat Commun       Date:  2019-02-04       Impact factor: 14.919

9.  Structural basis of nucleosomal histone H4 lysine 20 methylation by SET8 methyltransferase.

Authors:  Cheng-Han Ho; Yoshimasa Takizawa; Wataru Kobayashi; Yasuhiro Arimura; Hiroshi Kimura; Hitoshi Kurumizaka
Journal:  Life Sci Alliance       Date:  2021-02-11

10.  Tissue-specific expression of histone H3 variants diversified after species separation.

Authors:  Kazumitsu Maehara; Akihito Harada; Yuko Sato; Masaki Matsumoto; Keiichi I Nakayama; Hiroshi Kimura; Yasuyuki Ohkawa
Journal:  Epigenetics Chromatin       Date:  2015-09-17       Impact factor: 4.954

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