Literature DB >> 31710183

High expression of COPB2 predicts adverse outcomes: A potential therapeutic target for glioma.

Yan Zhou1, Xuan Wang1, Xing Huang1, Xu-Dong Li1, Kai Cheng1, Hao Yu1, Yu-Jie Zhou1, Peng Lv1, Xiao-Bing Jiang1.   

Abstract

AIMS: To evaluate the clinical significance of coatomer protein complex subunit beta 2 (COPB2) in patients with glioma using a bioinformatics analysis.
METHODS: Oncomine, GEO, and The Cancer Genome Atlas databases were used to examine the COPB2 transcript levels in glioma tissues. Gene expression profiles with clinical information from low-grade glioma and glioblastoma (GBM) projects were analyzed for associations between COPB2 expression and clinicopathologic characteristics. Kaplan-Meier survival and Cox regression analyses were used for survival analysis. Gene set enrichment analysis (GSEA) was conducted to screen the pathways involved in COPB2 expression. Gene set variation analysis (GSVA) and correlograms were performed to verify the correlations between COPB2 and inflammatory responses. Canonical correlation analyses examined whether COPB2-high patients have more infiltrating inflammatory and immune cells.
RESULTS: COPB2 was highly expressed in gliomas and high COPB2 expression correlated with shorter overall survival time and several poor clinical prognostic variables. GSEA indicated that some immune-related pathways and other signaling pathways in cancer were associated with the COPB2-high phenotype. The GSVA and canonical correlation analysis demonstrated that COPB2 expression was closely linked to inflammatory and immune responses, and higher immune cell infiltration.
CONCLUSIONS: COPB2 may be a potential prognostic biomarker and an immunotherapeutic target for glioma.
© 2019 The Authors. CNS Neuroscience & Therapeutics Published by John Wiley & Sons Ltd.

Entities:  

Keywords:  zzm321990COPB2zzm321990; biomarker; gene set enrichment analysis; gene set variation analysis; glioma

Mesh:

Substances:

Year:  2019        PMID: 31710183      PMCID: PMC7081167          DOI: 10.1111/cns.13254

Source DB:  PubMed          Journal:  CNS Neurosci Ther        ISSN: 1755-5930            Impact factor:   5.243


INTRODUCTION

Gliomas are the most common malignant brain tumors with high recurrence and lethality rates.1 According to the classification of the World Health Organization (WHO), brain gliomas are categorized into four grades (I‐IV).2 Glioblastoma multiforme (GBM, grade IV) exhibits a malignant phenotype associated with high proliferative activity, potent invasive ability, and vascular formation with a median survival rate of no more than 15 months postdiagnosis.3 With the development of biomedical techniques, several biomarkers and molecular classifications of glioma have been established. However, effective and reliable biomarkers that could predict poor prognosis and direct treatment strategies are rare. Thus, the identification of efficient neuropathological biomarkers and therapeutic targets is urgently required. The coatomer protein complex subunit beta 2 (COPB2), also known as beta prime‐COP or beta‐Cop, is one of the seven subunits that form coatomer complex I.4 COPB2 serves as a mediator in the process of protein synthesis which transports proteins from the endoplasmic reticulum (ER) to the Golgi apparatus.5 Recently, COPB2 has been viewed as a new oncogene in many cancer types. Bhandari et al6 reported that the upregulation of COPB2 in breast cancer is associated with age and lymph node metastasis in a validated cohort and promotes tumor cell proliferation and invasion. Further, a recent study demonstrated that COPB2 could be a potential target gene in prostate cancer.5 Loss of function experiments demonstrated that COPB2 downregulation arrests the cell cycle at G1 and G2 phases and induces cell apoptosis. Pu et al7 reported that COPB2 upregulation in lung adenocarcinoma cell lines facilitates cell growth and tumorigenesis via upregulating YAP1 expression. These previous findings indicated that COPB2 might play a critical role in the development of cancer. Yet, the clinical significance of COPB2 in glioma remains unclear. Thus, this research aimed to reveal the association between COPB2 and glioma and explore the potential prognostic value of COPB2 in patients with glioma based on The Cancer Genome Atlas (TCGA), Oncomine, and the Gene Expression Omnibus (GEO) databases. The results indicated that COPB2 was significantly overexpressed in glioma tissues compared with nontumor tissues and that high COPB2 expression was correlated with higher WHO grade, shorter overall survival (OS) time, and several poor clinical prognostic variables. Gene set enrichment analysis (GSEA) showed that some immune‐related pathways and other signaling pathways in cancer were associated with the COPB2 high expression phenotype, shedding light on the molecular mechanisms underlying the onset and progression of glioma. Gene set variation analysis (GSVA) and canonical correlation analysis demonstrated COPB2 expression was closely linked to a higher infiltration of immune cells, as well as inflammatory and immune responses.

METHODS

Public database and bioinformatics analysis

The transcript level of COPB2 in different cancers was ascertained by the Oncomine database (https://www.oncomine.org/resource/main.html),8 with a threshold set as such—top gene rank 10%, fold change >2, and P‐value <1E‐4. The microarray data of patients with glioma were downloaded from the GEO (https://www.ncbi.nlm.nih.gov/geo)9 public database under accession number http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE16011.10 Gene expression profile data containing clinical information from low‐grade glioma and GBM projects (HTSeq‐FPKM) were obtained from TCGA database (http://cancergenome.nih.gov/).11 The data from TCGA were further analyzed for associations between COPB2 expression and clinicopathologic characteristics in glioma.

Gene set enrichment analysis and gene set variation analysis

To investigate the potential mechanisms underlying the interaction of COPB2 expression on glioma progression, a GSEA12 was conducted to screen out whether some biological pathways showed statistically significant differences between high and low COPB2 expression groups. For each analysis, gene set permutations were implemented 1000 times. Gene sets with a false discovery rate (FDR) <0.05 and normal P‐value <.05 were viewed as significantly enriched. Moreover, GSVA13 was performed to transform gene expression values into scores for inflammatory response metagene sets, followed by the application of correlograms to further verify correlations between COPB2 and these metagenes.

Statistical analysis

The statistical analyses were performed utilizing R software v3.5.1. Descriptive statistics were used to summarize the molecular and clinical characteristics of patients in the TCGA database. To analyze potential relationships between COPB2 and clinicopathologic features, Mann‐Whitney U and logistic regression tests were used. The Kaplan‐Meier method and Cox regression analyses were used to compare the impact of COPB2 expression on the OS of TCGA patients alongside with other clinical variables. The remaining correlations between COPB2 expression and inflammatory and immune cell types were detected by using canonical correlation analysis in GraphPad Prism 7 and SPSS 25.0. In all statistical analyses conducted, a P‐value <.05 was viewed as statistically significant.

RESULTS

Glioma COPB2 transcript levels in different databases

Firstly, the transcript levels of COPB2 in different cancers were analyzed. The Oncomine database (one of the main functions of which is gene expression differential analysis) was used to explore the expression of COPB2 mRNA in different cancers (Figure 1A), and 189 datasets, including 33 144 samples, were included. Relative to normal clinical specimens, COPB2 indicated significant hyper‐expression in bladder, brain and central nervous system, breast, esophageal, head and neck, lung, lymphoma, sarcoma, and other cancers, but hypo‐expressed in leukemia (Figure 1A), suggesting that the high expression of COPB2 is common in various types of cancer. The detailed expression profile was summarized in Table S1.
Figure 1

A, COPB2’ expression level in cancers in Oncomine Database: the left box in red indicated the number of datasets with COPB2 hyperexpression and the right box in blue indicated the number of datasets with COPB2 hypo expression after comparing cancerous and normal tissues. B, C, TCGA cohort and GSE16011 dataset from GEO support the findings that indicate COPB2 upregulation in glioma

A, COPB2’ expression level in cancers in Oncomine Database: the left box in red indicated the number of datasets with COPB2 hyperexpression and the right box in blue indicated the number of datasets with COPB2 hypo expression after comparing cancerous and normal tissues. B, C, TCGA cohort and GSE16011 dataset from GEO support the findings that indicate COPB2 upregulation in glioma In glioma, 675 glioma patients with COPB2 expression profile data were obtained from TCGA COPB2 is significantly upregulated in tumor tissues relative to nontumor tissues (Figure 1B, P < .001). In addition, we also used the http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE16011 dataset from GEO database for the purpose of validation (Figure 1C, P < .001). The results indicated increased transcript levels of COPB2 in glioma.

TCGA glioma patient characteristics

As the TCGA database contains sufficient glioma samples, we only selected this database for further analysis of the association between gene and clinical characteristics. A total of 1114 cases (Table 1) with both gene expression and clinical data were available for 194 astrocytomas, 191 oligodendrogliomas, 130 oligoastrocytomas, 596 GBMs, and three cases that lacked histological information. The median age of patients was 52 years old, and there were 651 men and 460 women. The study cohort included 249 grade II, 265 grade III, and 596 grade IV cases, but unfortunately did not include any grade I cases. Only 125 cases were tested for the IDH1 mutation—8.17% (n = 91) were classified as a mutated type while 3.05% (n = 34) were not. With respect to KPS (Karnofsky Performance Score), 52.4% (n = 584) patients scored ≥80 points and 13.6% (n = 151) were <80 points. There were 209 tumor‐free (18.8%) and 783 tumor (70.3%) patients. A family history of cancer was present in 132 cases (11.9%). In respect to ethnicity, 4.04% (n = 45) were Hispanic or Latino, while the majority of cases (84.3%, n = 939) were not Hispanic or Latino. Finally, 51.7% (n = 570) patients were alive at last follow‐up contact and 48.4% (n = 539) were dead, while five patients lost contact.
Table 1

The Cancer Genome Atlas glioma patient characteristics

Clinical characteristicsNo. of patientsPercentage (%)
Age (y)9‐89Median 52 
SexMale65158.4
Female46041.3
Missing30.270
Vital statusAlive57051.2
Dead53948.4
Missing50.450
WHO gradeG224922.4
G326523.8
G459653.5
Missing43.60
HistologyAstrocytoma19417.4
Oligodendroglioma19117.2
Oligoastrocytoma13011.7
Glioblastoma59653.5
Missing30.270
KPS<8015113.6
≥8058452.4
Missing37934.0
Tumor statusTumor‐free20918.8
With tumor78370.3
Missing12211.0
IDH1 mutationYes918.17
No343.05
Missing98988.8
Family history of cancerYes13211.9
No21018.9
Missing77269.3
EthnicityHispanic or Latino454.04
Not Hispanic or Latino93984.3
Missing13011.7
The Cancer Genome Atlas glioma patient characteristics

Association with COPB2 expression and clinicopathologic features

To explore the expression pattern of COPB2 in gliomas, mRNA expression profiles from the TCGA database were obtained and analyzed. As shown in Figure 2(A‐H), increased expression of COPB2 correlated significantly with tumor grade (P < .001), histological type (P < .001), age (P < .001), KPS (P = .0260), tumor status (P < .001), and vital status (P < .001). Despite the lack of significant differences, a correlated trend was observed for IDH1 mutation (P = .114) and family history of cancer (P = .219).
Figure 2

Associations between COPB2 expression and clinicopathologic variables in TCGA cohort, including (A): age, (B): WHO Grade, (C): histological type, (D): KPS, (E): IDH1 mutation, (F): tumor status, (G): family history of cancer, (H): vital status, and (I): influence of COPB2 expression on overall survival of glioma patients in TCGA cohort

Associations between COPB2 expression and clinicopathologic variables in TCGA cohort, including (A): age, (B): WHO Grade, (C): histological type, (D): KPS, (E): IDH1 mutation, (F): tumor status, (G): family history of cancer, (H): vital status, and (I): influence of COPB2 expression on overall survival of glioma patients in TCGA cohort Univariate analysis using logistic regression revealed that COPB2 expression (ground on median expression value) was linked to poor prognostic clinicopathologic variables (Table 2). Increased COPB2 expression in glioma was significantly associated with age (≥52 vs <52, OR = 2.35, 95%CI [1.71‐3.23], P < .001), vital status (dead vs alive, OR = 2.89, 95%CI [2.07‐4.07], P < .001), grade (III vs II, OR = 1.92, 95%CI [1.35‐2.76], P < .001; IV vs II, OR = 8.00, 95%CI [5.07‐12.9], P < .001), histology type (GBM vs astrocytoma, OR = 4.20, 95%CI [2.70‐6.61], P < .001; GBM vs oligoastrocytoma, OR = 6.08, 95%CI [3.67‐10.3], P < .001; and GBM vs oligodendroglioma, OR = 5.54, 95%CI [3.52‐8.85], P < .001), tumor status (with tumor vs tumor‐free, OR = 3.11, 95%CI [2.17‐4.50], P < .001), and KPS (<80 vs ≥80, OR = 1.80, 95%CI [1.07‐3.07], P = .03). No significant differences were found on the sex, IDH1 mutation, ethnicity, and family history of cancer subgroups. These results essentially indicate that COPB2 may serve as an oncogene and glioma patients with high COPB2 expression are liable to progress to a more advanced WHO grades, worse histology types, and gain lower KPS points.
Table 2

COPB2 expression associated with clinical‐pathological characteristics (logistic regression)

Clinical characteristicsTotal (N)Odds ratio in COPB2 expression P‐value
Age (≥52 vs <52)6702.35 (1.71‐3.23)<.001
Sex (male vs female)6701.10 (0.81‐1.50).530
Vital status (dead vs alive)6702.89 (2.07‐4.07)<.001
Grade (III vs II)5091.92 (1.35‐2.76)<.001
(IV vs II)4098.00 (5.07‐12.89)<.001
Histological type
(GBM vs astrocytoma)3524.20 (2.70‐6.61)<.001
(GBM vs oligoastrocytoma)2886.08 (3.67‐10.29)<.001
(GBM vs oligodendroglioma)3505.54 (3.52‐8.85)<.001
Tumor status (with tumor vs tumor‐free)5913.11 (2.17‐4.50)<.001
IDH1 mutation (yes vs no)1260.510 (0.220‐1.12).100
KPS (<80 vs ≥80)4131.80 (1.07‐3.07).0300
Ethnicity (Hispanic or Latino vs not Hispanic or Latino)6091.28 (0.640‐2.61).490
Family history of cancer (yes vs no)3381.22 (0.790‐1.89).370
COPB2 expression associated with clinical‐pathological characteristics (logistic regression)

Survival outcomes and multivariate analysis

To investigate the predictive implications of COPB2 in glioma prognosis, we analyzed COPB2 expression and the OS in the TCGA database. After eliminating patients with absent OS data, remaining patients underwent a Kaplan‐Meier analysis. Glioma patients with COPB2‐high had a worse prognosis than that with COPB2‐low (Figure 2I, P < .001). Univariate and multivariate Cox analyses were conducted to further explore the prognostic value of COPB2. In total, 342 gliomas patients with integrated data containing all the variables were analyzed. The univariate Cox regression revealed that COPB2‐high correlated significantly with a worse OS (hazard ratio [HR]: 1.13, 95%CI [1.09‐1.18], P < .001) (Table 3). Other clinicopathologic characteristics associated with poor survival were age (HR = 3.70, 95%CI [2.52‐5.44]), WHO grade (HR = 5.32, 95%CI [3.88‐7.31]), histological type (HR = 1.89, 95%CI [1.54‐2.30]), KPS (HR = 2.26, 95%CI [1.41‐3.62]), and tumor status (HR = 39.7, 95%CI [5.53‐284]), all with P < .001. The multivariate Cox analysis identified COPB2 remained independently associated with OS, with a HR of 1.05 (CI: 1.01‐1.08, P = .006), along with tumor status.
Table 3

(A) Univariate analysis of clinicopathologic characteristics and overall survival in The Cancer Genome Atlas cohort. (B) Multivariate analysis postvariable selection

CharacteristicsHazard ratio (95% CI) P‐value
A.
Age3.70 (2.52‐5.44)<.001
Gender1.08 (0.750‐1.55).696
Grade5.32 (3.88‐7.31)<.001
Histological type1.89 (1.54‐2.30)<.001
KPS2.26 (1.41‐3.62)<.001
Tumor status39.7 (5.53‐284)<.001
Ethnicity0.480 (0.150‐1.51).209
COPB2 expression1.13 (1.09‐1.18)<.001
B.
Tumor status4.51 (3.29‐6.18)<.001
Histological type1.07 (0.900‐1.27).452
COPB2 expression1.05 (1.01‐1.08).00600
(A) Univariate analysis of clinicopathologic characteristics and overall survival in The Cancer Genome Atlas cohort. (B) Multivariate analysis postvariable selection

COPB2‐related signaling pathways based on GSEA

As many signaling pathways contribute to tumor initiation and progression, the poor prognosis of COPB2‐high may be related to the numerous signaling pathways activated in glioma. GSEA was utilized to recognize signaling pathways involved in glioma between low and high COPB2 expression cohorts. Significant differences (normalized P < .05, FDR < 0.05) were observed in the enrichment of the MSigDB Collection (kegg.v6.2.symbols.gmt). Several signaling pathways—especially inflammation‐ and immunity‐related pathways—were enriched in the COPB2 high expression phenotype, including B‐cell receptor, T‐cell receptor, natural killer (NK) cell‐mediated cytotoxicity, antigen processing and presentation, Fc gamma R‐mediated phagocytosis, cytokine‐cytokine receptor interaction, leukocyte transendothelial migration, and other pathways in cancer (please see Figure 3 and Table 4).
Figure 3

Enrichment plots from gene set enrichment analysis (GSEA)

Table 4

Gene sets enriched in high COPB2 expression phenotype

MSigDB collectionGene set nameNESNOM P‐valueFDR q‐value
Kegg.v6.2.symbols.gmtKEGG_ANTIGEN_PROCESSING_AND_PRESENTATION1.78.01800.0250
KEGG_B_CELL_RECEPTOR_SIGNALING_PATHWAY1.73.02400.0300
KEGG_T_CELL_RECEPTOR_SIGNALING_PATHWAY1.68.02500.0390
KEGG_FC_GAMMA_R_MEDIATED_PHAGOCYTOSIS1.80.008000.0220
KEGG_NATURAL_KILLER_CELL_MEDIATED_CYTOTOXICITY1.66.03300.0420
KEGG_LEUKOCYTE_TRANSENDOTHELIAL_MIGRATION1.91.002000.0110
KEGG_PATHWAYS_IN_CANCER2.1400.00300
KEGG_CYTOKINE_CYTOKINE_RECEPTOR_INTERACTION1.73.02700.0300

Gene sets with NOM P‐value <.05 and FDR q‐value <0.05 were considered as significantly enriched.

Abbreviations: FDR, false discovery rate; NES, normalized enrichment score; NOM, nominal.

Enrichment plots from gene set enrichment analysis (GSEA) Gene sets enriched in high COPB2 expression phenotype Gene sets with NOM P‐value <.05 and FDR q‐value <0.05 were considered as significantly enriched. Abbreviations: FDR, false discovery rate; NES, normalized enrichment score; NOM, nominal.

COPB2‐related inflammatory response

To better comprehend COPB2‐related inflammatory activities, seven immune system‐related metagene clusters (comprising 104 genes)14 that serve as surrogate markers of different immunological cell types were employed (Data S1). COPB2 expression, metagenes expression, age, gender, vital status, tumor grade, and histology of samples were displayed on a heat map in Figure 4. COPB2 expression was positively correlated with most genes of the gene sets HCK, LCK, interferon, STAT1, MHC I, and MHC II, but negatively with most IgG genes. To validate the heatmap analysis, a GSVA was conducted to transform gene expression values into enrichment scores for each metagene set. Correlograms were generated (using the R language program) to measure correlations between COPB2 expression and the enrichment scores of the seven metagenes—these confirmed the aforementioned results (Figure 5A).
Figure 4

COPB2‐related inflammatory response. Heat maps displaying COPB2 expression, the clinicopathological parameters, and seven well‐established metagenes from the TCGA datasets

Figure 5

A, Correlograms were established based on GSVA enrichment scores for the seven metagenes and COPB2 expression. The circles filled clockwise in blue represented positive values and anticlockwise in red represented negative values. The color depth increased with the absolute values of the correlation. B, Correlations of COPB2 mRNA with immune cell markers. Each circle represented a single sample

COPB2‐related inflammatory response. Heat maps displaying COPB2 expression, the clinicopathological parameters, and seven well‐established metagenes from the TCGA datasets A, Correlograms were established based on GSVA enrichment scores for the seven metagenes and COPB2 expression. The circles filled clockwise in blue represented positive values and anticlockwise in red represented negative values. The color depth increased with the absolute values of the correlation. B, Correlations of COPB2 mRNA with immune cell markers. Each circle represented a single sample

Relationship between COPB2 and infiltrating immune cells

Previous studies reported that tumor‐infiltrating immune cells may represent a crucial pathophysiological factor in the onset and progression of glioma.15 We examined the relationship between COPB2 and six immune cell types that frequently infiltrate the tumor microenvironment, including innate immune cells: neutrophils, tumor‐associated macrophages (TAMs), NK cells, and myeloid‐derived suppressor cells (MDSCs)16, 17 and adaptive immune cells: CD8+T cells and regulatory T cells (Tregs).18, 19 The specific biomarker genes of each immune cell type are displayed in Data S2. Canonical correlation analysis revealed that the transcript levels of COPB2 were positively correlated with the marker gene expression of these six immune cell types in the TCGA datasets (Figure 5B, P < .001), indicating that glioma patients with COPB2‐high were prone to have more immune cells infiltrated than glioma patients with COPB2‐low.

DISCUSSION

In our study, the quantitative results indicated that COPB2 had higher expression levels in most cancers compared with normal tissues in the Oncomine database. In addition, COPB2’s high expression in patients with glioma was further validated in the TCGA and GEO databases. RNA sequencing data from TCGA were also obtained and analyzed. COPB2 expression levels were correlated with advanced clinicopathological parameters (high grade, histological type, tumor status, age, vital status, and KPS) and a shorter survival time. Univariate and multivariate Cox analyses showed that COPB2 may be a promising biomarker for glioma prognosis while a GSEA using TCGA data revealed that some inflammation‐ and immunity‐related pathways and other signaling pathways in cancer are differentially enriched in the COPB2 high expression phenotype. To further investigate COPB2‐related inflammatory activities, heatmaps using seven immune‐related metagenes demonstrated that COPB2 transcript levels were positively correlated with gene sets for HCK, LCK, interferon, STAT1, MHC I, and MHC II but negatively with IgG, a marker basically associated with B cells. These results were verified by correlograms analysis using GSVA. Moreover, a positive correlation was observed between COPB2 expression and marker gene expression of all six immune cell types including innate (neutrophils, TAMs, MDSCs, and NK cells) and adaptive (CD8+T cells and Tregs) immune cells by canonical correlation analyses. These results suggested an essential role for COPB2 in the immune microenvironment of gliomas. In the last decade, sequencing analysis has been applied comprehensively to explore the molecular mechanisms implicated in the process of disease progression.20 Recently, some reports found significant differences in COPB2’s expression in various tumors. Underexpression of COPB2 could downregulate the EMT‐related protein N‐cadherin and vimentin which may promote breast tumor cell invasion.6 Knockdown of COPB2 led to cell apoptosis by inhibiting the RTK signaling cascade molecules in gastric cancer.21 In lung adenocarcinoma,7 patients with COPB2‐high had worse survival status than COPB2‐low. In the present study, we demonstrated that the overexpression of COPB2 in glioma was correlated with advanced clinicopathologic characteristics and predicts worse outcomes. These findings indicated that COPB2 may be regarded as a promising target for cancer gene therapy. Glioma cells could release multiple cytokines that promote the infiltration of various immune cells such as MDSCs, microglia, Tregs, macrophages, CD8 T cells, and CD4 T cells into the tumor microenvironment,22 as tumors not only recruit immune cells, but also transform said cells into phenotypes that can help tumor cells evade immune system surveillance (Table 5). For example, Roesch et al23 reported that macrophages/glioma‐associated microglia (GAMs) tend to gather in tumor sites and generate an immunosuppressive tumor microenvironment which promote glioma invasion, growth, and angiogenesis.22, 24 Interestingly, one novel discovery of the present study is that COPB2 was involved in the immune microenvironment of glioma. Here, we observed a correlation between COPB2 transcript levels and immunosuppressive cell types—such as Tregs, neutrophils, and MDSCs (Figure 5B)—which might exhibit immunosuppressive activities and leading to adverse clinical outcomes in patients with cancer. However, future laboratory research and clinical trials are required to exhaustively explore the interaction between COPB2 and immunosuppressive cells.
Table 5

Secreted and membrane immunosuppressive molecules expressed by glioma cells

CytokinesTypeFunctionReferences

TGFβ

IL‐10

PGE2

Gangliosides

SolubleSuppressing T‐cell activation, proliferation and differentiation into effector cells. 30, 31
CD70 Membrane proteinsInducing apoptosis of T and B cells from PBMCs. 32
FASL Inducing apoptosis of FAS‐expressing T cells. 33
HLA‐G Inhibiting proliferation, cytotoxicity by interaction with inhibitory receptors expressed on effector lymphocytes. 34
IDO Inhibiting T‐cell proliferation. 35
PD‐L1 PD‐L1 expressed by glioma inhibits IFN‐γ production of antitumor T cells. 36
Secreted and membrane immunosuppressive molecules expressed by glioma cells TGFβ IL‐10 PGE2 Gangliosides In recent years, the use of immune checkpoint inhibitors (ICIs) has been popular in the treatment of malignant tumors.25, 26 Some ICIs, such as anti‐PD‐1 antibody, are superior to traditional chemoradiotherapy in terms of its clinical curative effect.27 However, certain types of malignant tumors, such as glioblastoma, are resistant to monotherapy with ICIs.27, 28 Therefore, new immunotherapeutic targets are urgently needed to treat glioma. Bullock BL et al29 demonstrated that IFN‐γ signaling represents an important pathway in the resistance to anti–PD‐1 treatment in cancer. In the present study, COPB2 expression was observed to be positively associated with the interferon gene sets (Figures 4 and 5A). Thus, it makes sense to try to combine anti–PD‐1 therapy and anti‐COPB2 therapy to amplify the efficacy of treatments typically used in isolation. Some limitations were present in this study: First, the number of patients incorporated in the univariate and multivariate Cox analyses patients were reduced as many patients had missing integrated data on all variables; second, only a small number of healthy samples were used as controls, so additional studies are needed to balance sample size; and lastly, laboratory studies should be carried out to elucidate the precise mechanisms of COPB2 overexpression in human glioma and clarify its relationship with poor prognosis and immunomodulation.

CONCLUSION

As far as we are aware, at present, this is the first study to explore the prognostic value of COPB2 in patients with glioma. This study revealed that COPB2 expression was upregulated in glioma samples and was related to adverse outcomes. We also found that COPB2 may represent an important factor in the immunomodulation of the glioma immune microenvironment. Therefore, taken together, COPB2 may act as a potential biomarker of prognosis and immunotherapeutic target for glioma.

CONFLICT OF INTEREST

The authors declare no conflict of interest. Click here for additional data file. Click here for additional data file. Click here for additional data file.
  37 in total

1.  The Gene Expression Omnibus Database.

Authors:  Emily Clough; Tanya Barrett
Journal:  Methods Mol Biol       Date:  2016

Review 2.  Immune microenvironment of gliomas.

Authors:  Anna Gieryng; Dominika Pszczolkowska; Kacper A Walentynowicz; Wenson D Rajan; Bozena Kaminska
Journal:  Lab Invest       Date:  2017-03-13       Impact factor: 5.662

Review 3.  Role of Fas ligand (CD95L) in immune escape: the tumor cell strikes back.

Authors:  P R Walker; P Saas; P Y Dietrich
Journal:  J Immunol       Date:  1997-05-15       Impact factor: 5.422

Review 4.  Mechanisms of local immunoresistance in glioma.

Authors:  Emilia Albesiano; James E Han; Michael Lim
Journal:  Neurosurg Clin N Am       Date:  2010-01       Impact factor: 2.509

5.  T cell memory. Resident memory CD8 T cells trigger protective innate and adaptive immune responses.

Authors:  Jason M Schenkel; Kathryn A Fraser; Lalit K Beura; Kristen E Pauken; Vaiva Vezys; David Masopust
Journal:  Science       Date:  2014-08-28       Impact factor: 47.728

Review 6.  Studying cancer genomics through next-generation DNA sequencing and bioinformatics.

Authors:  Maria A Doyle; Jason Li; Ken Doig; Andrew Fellowes; Stephen Q Wong
Journal:  Methods Mol Biol       Date:  2014

Review 7.  The innate and adaptive infiltrating immune systems as targets for breast cancer immunotherapy.

Authors:  Andrew M K Law; Elgene Lim; Christopher J Ormandy; David Gallego-Ortega
Journal:  Endocr Relat Cancer       Date:  2017-02-13       Impact factor: 5.678

8.  COPB2 is up-regulated in breast cancer and plays a vital role in the metastasis via N-cadherin and Vimentin.

Authors:  Adheesh Bhandari; Chen Zheng; Namita Sindan; Namrata Sindan; Ruida Quan; Erjie Xia; Yubaraj Thapa; Dependra Tamang; Ouchen Wang; Xiaohe Ye; Duping Huang
Journal:  J Cell Mol Med       Date:  2019-05-22       Impact factor: 5.310

9.  GSVA: gene set variation analysis for microarray and RNA-seq data.

Authors:  Sonja Hänzelmann; Robert Castelo; Justin Guinney
Journal:  BMC Bioinformatics       Date:  2013-01-16       Impact factor: 3.169

10.  T-cell metagene predicts a favorable prognosis in estrogen receptor-negative and HER2-positive breast cancers.

Authors:  Achim Rody; Uwe Holtrich; Laos Pusztai; Cornelia Liedtke; Regine Gaetje; Eugen Ruckhaeberle; Christine Solbach; Lars Hanker; Andre Ahr; Dirk Metzler; Knut Engels; Thomas Karn; Manfred Kaufmann
Journal:  Breast Cancer Res       Date:  2009-03-09       Impact factor: 6.466

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1.  Implication of COPB2 Expression on Cutaneous Squamous Cell Carcinoma Pathogenesis.

Authors:  Taiqin Chen; Ki-Yeol Kim; Yeongjoo Oh; Hei Cheul Jeung; Kee Yang Chung; Mi Ryung Roh; Xianglan Zhang
Journal:  Cancers (Basel)       Date:  2022-04-18       Impact factor: 6.575

2.  Ferroptosis-related gene signature predicts prognosis and immunotherapy in glioma.

Authors:  Rong-Jun Wan; Wang Peng; Qin-Xuan Xia; Hong-Hao Zhou; Xiao-Yuan Mao
Journal:  CNS Neurosci Ther       Date:  2021-05-10       Impact factor: 5.243

3.  Impact of beta-2 microglobulin expression on the survival of glioma patients via modulating the tumor immune microenvironment.

Authors:  Feng Tang; Yu-Hang Zhao; Qing Zhang; Wei Wei; Su-Fang Tian; Chen Li; Jie Yao; Ze-Fen Wang; Zhi-Qiang Li
Journal:  CNS Neurosci Ther       Date:  2021-05-07       Impact factor: 5.243

4.  COPB2: A Novel Prognostic Biomarker That Affects Progression of HCC.

Authors:  Jiayao Zhang; Xiaoyu Wang; Guangbing Li; Jingyi He; Ziwen Lu; Yang Yang; Yong Jiang; Liyong Jiang; Feiyu Li; Jun Liu
Journal:  Biomed Res Int       Date:  2021-03-20       Impact factor: 3.411

5.  Disruption of rack1 suppresses SHH-type medulloblastoma formation in mice.

Authors:  Fengjiao Liu; Jingyuan Shao; Haihong Yang; Guochao Yang; Qian Zhu; Yan Wu; Lingling Zhu; Haitao Wu
Journal:  CNS Neurosci Ther       Date:  2021-09-04       Impact factor: 5.243

6.  Exploring the efficacy of tumor electric field therapy against glioblastoma: An in vivo and in vitro study.

Authors:  Hao Wu; Lin Yang; Hanjie Liu; Dan Zhou; Dikang Chen; Xiaoque Zheng; Hui Yang; Chong Li; Jiusheng Chang; Anhua Wu; Zhifei Wang; Nianjun Ren; Shengqing Lv; Yuyang Liu; Muyuan Jia; Jian Lu; Hongyu Liu; Guochen Sun; Zhixiong Liu; Jialin Liu; Ling Chen
Journal:  CNS Neurosci Ther       Date:  2021-10-28       Impact factor: 5.243

7.  High expression of COPB2 predicts adverse outcomes: A potential therapeutic target for glioma.

Authors:  Yan Zhou; Xuan Wang; Xing Huang; Xu-Dong Li; Kai Cheng; Hao Yu; Yu-Jie Zhou; Peng Lv; Xiao-Bing Jiang
Journal:  CNS Neurosci Ther       Date:  2019-11-11       Impact factor: 5.243

8.  COPB2 gene silencing inhibits colorectal cancer cell proliferation and induces apoptosis via the JNK/c-Jun signaling pathway.

Authors:  Yan Wang; Guangmei Xie; Min Li; Juan Du; Min Wang
Journal:  PLoS One       Date:  2020-11-19       Impact factor: 3.240

9.  Silencing the COPB2 gene decreases the proliferation, migration and invasion of human triple-negative breast cancer cells.

Authors:  Wencheng Wu; Chenyu Wang; Fengxia Wang; Yan Wang; Yanling Jin; Jing Luo; Min Wang; Chenli Zhang; Shuya Wang; Fangfang Zhang; Min Li
Journal:  Exp Ther Med       Date:  2021-05-24       Impact factor: 2.447

10.  Curzerene suppresses progression of human glioblastoma through inhibition of glutathione S-transferase A4.

Authors:  Bo Cheng; Xiaoliang Hong; Linfang Wang; Yuanyuan Cao; Dengli Qin; Han Zhou; Dianshuai Gao
Journal:  CNS Neurosci Ther       Date:  2022-01-20       Impact factor: 5.243

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