Literature DB >> 31706134

Photocrosslinking probes for capture of carbohydrate interactions.

Han Wu1, Jennifer Kohler2.   

Abstract

Glycan-mediated interactions are essential in many biological processes and regulate a wide variety of cellular functions. However, characterizing these interactions is difficult because glycan biosynthesis is not template driven and because carbohydrate recognition events are usually of low affinity and transient. Photocrosslinking carbohydrate probes can form a covalent bond with molecules in close proximity on UV irradiation and are capable of capturing interactions between glycans and glycan-binding proteins in situ. Because of these advantages, multiple photocrosslinking carbohydrate probes have been designed and applied to study the biological functions of glycans. This review will discuss recent advances in the development of novel photocrosslinking functional groups and the design of photocrosslinking probes to detect interactions mediated by glycolipids, peptidoglycan, and multivalent carbohydrate ligands. These probes have demonstrated the potential to address some of the major challenges in the study of glycan-mediated interactions in both model systems and in more complex biological settings.
Copyright © 2019 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  Bioorthogonal; Diazirine; Glycolipids; Glycoproteins; Glycosylation; Peptidoglycan; Photocrosslinking

Mesh:

Substances:

Year:  2019        PMID: 31706134      PMCID: PMC7192017          DOI: 10.1016/j.cbpa.2019.09.002

Source DB:  PubMed          Journal:  Curr Opin Chem Biol        ISSN: 1367-5931            Impact factor:   8.822


  72 in total

1.  Fucosylation and protein glycosylation create functional receptors for cholera toxin.

Authors:  Amberlyn M Wands; Akiko Fujita; Janet E McCombs; Jakob Cervin; Benjamin Dedic; Andrea C Rodriguez; Nicole Nischan; Michelle R Bond; Marcel Mettlen; David C Trudgian; Andrew Lemoff; Marianne Quiding-Järbrink; Bengt Gustavsson; Catharina Steentoft; Henrik Clausen; Hamid Mirzaei; Susann Teneberg; Ulf Yrlid; Jennifer J Kohler
Journal:  Elife       Date:  2015-10-29       Impact factor: 8.140

2.  Metabolically incorporated photocrosslinking sialic acid covalently captures a ganglioside-protein complex.

Authors:  Michelle R Bond; Chad M Whitman; Jennifer J Kohler
Journal:  Mol Biosyst       Date:  2010-07-13

3.  Photoaffinity probes for studying carbohydrate biology.

Authors:  Seok-Ho Yu; Amberlyn M Wands; Jennifer J Kohler
Journal:  J Carbohydr Chem       Date:  2012-07-02       Impact factor: 1.667

Review 4.  Photo-induced covalent cross-linking for the analysis of biomolecular interactions.

Authors:  George W Preston; Andrew J Wilson
Journal:  Chem Soc Rev       Date:  2013-02-11       Impact factor: 54.564

5.  Lysine and arginine side chains in glycosaminoglycan-protein complexes investigated by NMR, cross-linking, and mass spectrometry: a case study of the factor H-heparin interaction.

Authors:  Bärbel S Blaum; Jon A Deakin; Conny M Johansson; Andrew P Herbert; Paul N Barlow; Malcolm Lyon; Dusan Uhrín
Journal:  J Am Chem Soc       Date:  2010-05-12       Impact factor: 15.419

6.  Amino Acid Insertion Frequencies Arising from Photoproducts Generated Using Aliphatic Diazirines.

Authors:  Daniel S Ziemianowicz; Ryan Bomgarden; Chris Etienne; David C Schriemer
Journal:  J Am Soc Mass Spectrom       Date:  2017-08-10       Impact factor: 3.109

Review 7.  Multivalent glycosylated nanoparticles for studying carbohydrate-protein interactions.

Authors:  Avijit K Adak; Hong-Jyune Lin; Chun-Cheng Lin
Journal:  Org Biomol Chem       Date:  2014-06-25       Impact factor: 3.876

Review 8.  Organizing multivalency in carbohydrate recognition.

Authors:  Christian Müller; Guillaume Despras; Thisbe K Lindhorst
Journal:  Chem Soc Rev       Date:  2016-05-05       Impact factor: 54.564

9.  2-Aryl-5-carboxytetrazole as a New Photoaffinity Label for Drug Target Identification.

Authors:  András Herner; Jasmina Marjanovic; Tracey M Lewandowski; Violeta Marin; Melanie Patterson; Laura Miesbauer; Damien Ready; Jon Williams; Anil Vasudevan; Qing Lin
Journal:  J Am Chem Soc       Date:  2016-10-26       Impact factor: 15.419

10.  GM1 ganglioside-independent intoxication by Cholera toxin.

Authors:  Jakob Cervin; Amberlyn M Wands; Anna Casselbrant; Han Wu; Soumya Krishnamurthy; Aleksander Cvjetkovic; Johanna Estelius; Benjamin Dedic; Anirudh Sethi; Kerri-Lee Wallom; Rebecca Riise; Malin Bäckström; Ville Wallenius; Frances M Platt; Michael Lebens; Susann Teneberg; Lars Fändriks; Jennifer J Kohler; Ulf Yrlid
Journal:  PLoS Pathog       Date:  2018-02-12       Impact factor: 6.823

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  8 in total

Review 1.  Chemical Biology Tools for Examining the Bacterial Cell Wall.

Authors:  Ashley R Brown; Rebecca A Gordon; Stephen N Hyland; M Sloan Siegrist; Catherine L Grimes
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Review 2.  Photoaffinity labelling strategies for mapping the small molecule-protein interactome.

Authors:  Nikolas R Burton; Phillip Kim; Keriann M Backus
Journal:  Org Biomol Chem       Date:  2021-09-22       Impact factor: 3.890

3.  New Insights Into the Biology of Protein O-GlcNAcylation: Approaches and Observations.

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4.  A light-initiated chemical reporter strategy for spatiotemporal labeling of biomolecules.

Authors:  Feifei Wang; Hao Kong; Xiangfeng Meng; Xiao Tian; Changjiang Wang; Lei Xu; Xiang Zhang; Lei Wang; Ran Xie
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Review 5.  Photo-controllable bioorthogonal chemistry for spatiotemporal control of bio-targets in living systems.

Authors:  Jinbo Li; Hao Kong; Chenghong Zhu; Yan Zhang
Journal:  Chem Sci       Date:  2020-03-10       Impact factor: 9.825

6.  Synthesis of aryl azide chain-end functionalized N-linked glycan polymers and their photo-labelling of specific protein.

Authors:  Ka Keung Chan; Qiaoshi Lei; Jinshan Tang; Xue-Long Sun
Journal:  RSC Adv       Date:  2020-10-19       Impact factor: 4.036

7.  A photo-cross-linking GlcNAc analog enables covalent capture of N-linked glycoprotein-binding partners on the cell surface.

Authors:  Han Wu; Asif Shajahan; Jeong-Yeh Yang; Emanuela Capota; Amberlyn M Wands; Connie M Arthur; Sean R Stowell; Kelley W Moremen; Parastoo Azadi; Jennifer J Kohler
Journal:  Cell Chem Biol       Date:  2021-07-30       Impact factor: 9.039

8.  Photocrosslinking O-GlcNAcylated Proteins to Neighboring Biomolecules.

Authors:  Emanuela Capota; Han Wu; Jennifer J Kohler
Journal:  Curr Protoc       Date:  2021-07
  8 in total

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