Literature DB >> 31701088

Towards Algorithmic Analytics for Large-scale Datasets.

Danilo Bzdok1,2,3, Thomas E Nichols4,5, Stephen M Smith4.   

Abstract

The traditional goals of quantitative analytics cherish simple, transparent models to generate explainable insights. Large-scale data acquisition, enabled for instance by brain scanning and genomic profiling with microarray-type techniques, has prompted a wave of statistical inventions and innovative applications. Modern analysis approaches 1) tame large variable arrays capitalizing on regularization and dimensionality-reduction strategies, 2) are increasingly backed up by empirical model validations rather than justified by mathematical proofs, 3) will compare against and build on open data and consortium repositories, as well as 4) often embrace more elaborate, less interpretable models in order to maximize prediction accuracy. Here we review these trends in learning from "big data" and illustrate examples from imaging neuroscience.

Entities:  

Keywords:  data science; deep phenotyping; explainable AI; machine learning; open science; reproducibility

Year:  2019        PMID: 31701088      PMCID: PMC6837858          DOI: 10.1038/s42256-019-0069-5

Source DB:  PubMed          Journal:  Nat Mach Intell        ISSN: 2522-5839


  57 in total

1.  Classical and Bayesian inference in neuroimaging: theory.

Authors:  K J Friston; W Penny; C Phillips; S Kiebel; G Hinton; J Ashburner
Journal:  Neuroimage       Date:  2002-06       Impact factor: 6.556

Review 2.  Assessing and tuning brain decoders: Cross-validation, caveats, and guidelines.

Authors:  Gaël Varoquaux; Pradeep Reddy Raamana; Denis A Engemann; Andrés Hoyos-Idrobo; Yannick Schwartz; Bertrand Thirion
Journal:  Neuroimage       Date:  2016-10-29       Impact factor: 6.556

3.  Toward an Integration of Deep Learning and Neuroscience.

Authors:  Adam H Marblestone; Greg Wayne; Konrad P Kording
Journal:  Front Comput Neurosci       Date:  2016-09-14       Impact factor: 2.380

4.  Standardized evaluation of algorithms for computer-aided diagnosis of dementia based on structural MRI: the CADDementia challenge.

Authors:  Esther E Bron; Marion Smits; Wiesje M van der Flier; Hugo Vrenken; Frederik Barkhof; Philip Scheltens; Janne M Papma; Rebecca M E Steketee; Carolina Méndez Orellana; Rozanna Meijboom; Madalena Pinto; Joana R Meireles; Carolina Garrett; António J Bastos-Leite; Ahmed Abdulkadir; Olaf Ronneberger; Nicola Amoroso; Roberto Bellotti; David Cárdenas-Peña; Andrés M Álvarez-Meza; Chester V Dolph; Khan M Iftekharuddin; Simon F Eskildsen; Pierrick Coupé; Vladimir S Fonov; Katja Franke; Christian Gaser; Christian Ledig; Ricardo Guerrero; Tong Tong; Katherine R Gray; Elaheh Moradi; Jussi Tohka; Alexandre Routier; Stanley Durrleman; Alessia Sarica; Giuseppe Di Fatta; Francesco Sensi; Andrea Chincarini; Garry M Smith; Zhivko V Stoyanov; Lauge Sørensen; Mads Nielsen; Sabina Tangaro; Paolo Inglese; Christian Wachinger; Martin Reuter; John C van Swieten; Wiro J Niessen; Stefan Klein
Journal:  Neuroimage       Date:  2015-01-31       Impact factor: 6.556

Review 5.  Building better biomarkers: brain models in translational neuroimaging.

Authors:  Choong-Wan Woo; Luke J Chang; Martin A Lindquist; Tor D Wager
Journal:  Nat Neurosci       Date:  2017-02-23       Impact factor: 24.884

6.  Handling Multiplicity in Neuroimaging Through Bayesian Lenses with Multilevel Modeling.

Authors:  Gang Chen; Yaqiong Xiao; Paul A Taylor; Justin K Rajendra; Tracy Riggins; Fengji Geng; Elizabeth Redcay; Robert W Cox
Journal:  Neuroinformatics       Date:  2019-10

Review 7.  Machine learning classifiers and fMRI: a tutorial overview.

Authors:  Francisco Pereira; Tom Mitchell; Matthew Botvinick
Journal:  Neuroimage       Date:  2008-11-21       Impact factor: 6.556

8.  Characterization of the temporo-parietal junction by combining data-driven parcellation, complementary connectivity analyses, and functional decoding.

Authors:  Danilo Bzdok; Robert Langner; Leonhard Schilbach; Oliver Jakobs; Christian Roski; Svenja Caspers; Angela R Laird; Peter T Fox; Karl Zilles; Simon B Eickhoff
Journal:  Neuroimage       Date:  2013-05-17       Impact factor: 6.556

9.  Sparsity Is Better with Stability: Combining Accuracy and Stability for Model Selection in Brain Decoding.

Authors:  Luca Baldassarre; Massimiliano Pontil; Janaina Mourão-Miranda
Journal:  Front Neurosci       Date:  2017-02-17       Impact factor: 4.677

Review 10.  Classical Statistics and Statistical Learning in Imaging Neuroscience.

Authors:  Danilo Bzdok
Journal:  Front Neurosci       Date:  2017-10-06       Impact factor: 4.677

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  20 in total

1.  Population variability in social brain morphology for social support, household size and friendship satisfaction.

Authors:  Arezoo Taebi; Hannah Kiesow; Kai Vogeley; Leonhard Schilbach; Boris C Bernhardt; Danilo Bzdok
Journal:  Soc Cogn Affect Neurosci       Date:  2020-07-30       Impact factor: 3.436

2.  Using Machine Learning in Psychiatry: The Need to Establish a Framework That Nurtures Trustworthiness.

Authors:  Chelsea Chandler; Peter W Foltz; Brita Elvevåg
Journal:  Schizophr Bull       Date:  2020-01-04       Impact factor: 9.306

3.  Analysing brain networks in population neuroscience: a case for the Bayesian philosophy.

Authors:  Danilo Bzdok; Dorothea L Floris; Andre F Marquand
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2020-02-24       Impact factor: 6.237

4.  Brain-based ranking of cognitive domains to predict schizophrenia.

Authors:  Teresa M Karrer; Danielle S Bassett; Birgit Derntl; Oliver Gruber; André Aleman; Renaud Jardri; Angela R Laird; Peter T Fox; Simon B Eickhoff; Olivier Grisel; Gaël Varoquaux; Bertrand Thirion; Danilo Bzdok
Journal:  Hum Brain Mapp       Date:  2019-07-16       Impact factor: 5.038

5.  From Precision Medicine to Precision Convergence for Multilevel Resilience-The Aging Brain and Its Social Isolation.

Authors:  Laurette Dubé; Patricia P Silveira; Daiva E Nielsen; Spencer Moore; Catherine Paquet; J Miguel Cisneros-Franco; Gina Kemp; Bärbel Knauper; Yu Ma; Mehmood Khan; Gillian Bartlett-Esquilant; Alan C Evans; Lesley K Fellows; Jorge L Armony; R Nathan Spreng; Jian-Yun Nie; Shawn T Brown; Georg Northoff; Danilo Bzdok
Journal:  Front Public Health       Date:  2022-07-05

6.  Lacking social support is associated with structural divergences in hippocampus-default network co-variation patterns.

Authors:  Chris Zajner; R Nathan Spreng; Danilo Bzdok
Journal:  Soc Cogn Affect Neurosci       Date:  2022-09-01       Impact factor: 4.235

Review 7.  The social nature of mitochondria: Implications for human health.

Authors:  Martin Picard; Carmen Sandi
Journal:  Neurosci Biobehav Rev       Date:  2020-07-08       Impact factor: 8.989

8.  Transdiagnostic, Connectome-Based Prediction of Memory Constructs Across Psychiatric Disorders.

Authors:  Daniel S Barron; Siyuan Gao; Javid Dadashkarimi; Abigail S Greene; Marisa N Spann; Stephanie Noble; Evelyn M R Lake; John H Krystal; R Todd Constable; Dustin Scheinost
Journal:  Cereb Cortex       Date:  2021-03-31       Impact factor: 5.357

Review 9.  Toward Community-Driven Big Open Brain Science: Open Big Data and Tools for Structure, Function, and Genetics.

Authors:  Adam S Charles; Benjamin Falk; Nicholas Turner; Talmo D Pereira; Daniel Tward; Benjamin D Pedigo; Jaewon Chung; Randal Burns; Satrajit S Ghosh; Justus M Kebschull; William Silversmith; Joshua T Vogelstein
Journal:  Annu Rev Neurosci       Date:  2020-04-13       Impact factor: 15.553

10.  Dissecting the midlife crisis: disentangling social, personality and demographic determinants in social brain anatomy.

Authors:  Hannah Kiesow; Lucina Q Uddin; Boris C Bernhardt; Joseph Kable; Danilo Bzdok
Journal:  Commun Biol       Date:  2021-06-17
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