Literature DB >> 32089111

Analysing brain networks in population neuroscience: a case for the Bayesian philosophy.

Danilo Bzdok1,2,3, Dorothea L Floris4, Andre F Marquand4,5.   

Abstract

Network connectivity fingerprints are among today's best choices to obtain a faithful sampling of an individual's brain and cognition. Widely available MRI scanners can provide rich information tapping into network recruitment and reconfiguration that now scales to hundreds and thousands of humans. Here, we contemplate the advantages of analysing such connectome profiles using Bayesian strategies. These analysis techniques afford full probability estimates of the studied network coupling phenomena, provide analytical machinery to separate epistemological uncertainty and biological variability in a coherent manner, usher us towards avenues to go beyond binary statements on existence versus non-existence of an effect, and afford credibility estimates around all model parameters at play which thus enable single-subject predictions with rigorous uncertainty intervals. We illustrate the brittle boundary between healthy and diseased brain circuits by autism spectrum disorder as a recurring theme where, we argue, network-based approaches in neuroscience will require careful probabilistic answers. This article is part of the theme issue 'Unifying the essential concepts of biological networks: biological insights and philosophical foundations'.

Entities:  

Keywords:  confounding influences; connectome-based prediction; statistical learning; uncertainty

Mesh:

Year:  2020        PMID: 32089111      PMCID: PMC7061951          DOI: 10.1098/rstb.2019.0661

Source DB:  PubMed          Journal:  Philos Trans R Soc Lond B Biol Sci        ISSN: 0962-8436            Impact factor:   6.237


  75 in total

1.  Linked independent component analysis for multimodal data fusion.

Authors:  Adrian R Groves; Christian F Beckmann; Steve M Smith; Mark W Woolrich
Journal:  Neuroimage       Date:  2010-10-14       Impact factor: 6.556

Review 2.  Autism and abnormal development of brain connectivity.

Authors:  Matthew K Belmonte; Greg Allen; Andrea Beckel-Mitchener; Lisa M Boulanger; Ruth A Carper; Sara J Webb
Journal:  J Neurosci       Date:  2004-10-20       Impact factor: 6.167

3.  Structurally-informed Bayesian functional connectivity analysis.

Authors:  Max Hinne; Luca Ambrogioni; Ronald J Janssen; Tom Heskes; Marcel A J van Gerven
Journal:  Neuroimage       Date:  2013-10-10       Impact factor: 6.556

4.  Advances in Variational Inference.

Authors:  Cheng Zhang; Judith Butepage; Hedvig Kjellstrom; Stephan Mandt
Journal:  IEEE Trans Pattern Anal Mach Intell       Date:  2018-12-25       Impact factor: 6.226

5.  Functional connectivity-based subtypes of individuals with and without autism spectrum disorder.

Authors:  Amanda K Easson; Zainab Fatima; Anthony R McIntosh
Journal:  Netw Neurosci       Date:  2019-02-01

6.  A DCM for resting state fMRI.

Authors:  Karl J Friston; Joshua Kahan; Bharat Biswal; Adeel Razi
Journal:  Neuroimage       Date:  2013-12-15       Impact factor: 6.556

7.  The autism brain imaging data exchange: towards a large-scale evaluation of the intrinsic brain architecture in autism.

Authors:  A Di Martino; C-G Yan; Q Li; E Denio; F X Castellanos; K Alaerts; J S Anderson; M Assaf; S Y Bookheimer; M Dapretto; B Deen; S Delmonte; I Dinstein; B Ertl-Wagner; D A Fair; L Gallagher; D P Kennedy; C L Keown; C Keysers; J E Lainhart; C Lord; B Luna; V Menon; N J Minshew; C S Monk; S Mueller; R-A Müller; M B Nebel; J T Nigg; K O'Hearn; K A Pelphrey; S J Peltier; J D Rudie; S Sunaert; M Thioux; J M Tyszka; L Q Uddin; J S Verhoeven; N Wenderoth; J L Wiggins; S H Mostofsky; M P Milham
Journal:  Mol Psychiatry       Date:  2013-06-18       Impact factor: 15.992

Review 8.  Classical Statistics and Statistical Learning in Imaging Neuroscience.

Authors:  Danilo Bzdok
Journal:  Front Neurosci       Date:  2017-10-06       Impact factor: 4.677

9.  Network-specific sex differentiation of intrinsic brain function in males with autism.

Authors:  Dorothea L Floris; Meng-Chuan Lai; Tanmay Nath; Michael P Milham; Adriana Di Martino
Journal:  Mol Autism       Date:  2018-03-06       Impact factor: 6.476

10.  Shared endo-phenotypes of default mode dsfunction in attention deficit/hyperactivity disorder and autism spectrum disorder.

Authors:  Julius M Kernbach; Theodore D Satterthwaite; Danielle S Bassett; Jonathan Smallwood; Daniel Margulies; Sarah Krall; Philip Shaw; Gaël Varoquaux; Bertrand Thirion; Kerstin Konrad; Danilo Bzdok
Journal:  Transl Psychiatry       Date:  2018-07-17       Impact factor: 6.222

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  9 in total

1.  Population variability in social brain morphology for social support, household size and friendship satisfaction.

Authors:  Arezoo Taebi; Hannah Kiesow; Kai Vogeley; Leonhard Schilbach; Boris C Bernhardt; Danilo Bzdok
Journal:  Soc Cogn Affect Neurosci       Date:  2020-07-30       Impact factor: 3.436

2.  Unifying the essential concepts of biological networks: biological insights and philosophical foundations.

Authors:  Daniel Kostić; Claus C Hilgetag; Marc Tittgemeyer
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2020-02-24       Impact factor: 6.237

3.  Association of Stroke Lesion Pattern and White Matter Hyperintensity Burden With Stroke Severity and Outcome.

Authors:  Anna K Bonkhoff; Sungmin Hong; Martin Bretzner; Markus D Schirmer; Robert W Regenhardt; E Murat Arsava; Kathleen Donahue; Marco Nardin; Adrian Dalca; Anne-Katrin Giese; Mark R Etherton; Brandon L Hancock; Steven J T Mocking; Elissa McIntosh; John Attia; Oscar Benavente; John W Cole; Amanda Donatti; Christoph Griessenauer; Laura Heitsch; Lukas Holmegaard; Katarina Jood; Jordi Jimenez-Conde; Steven Kittner; Robin Lemmens; Christopher Levi; Caitrin W McDonough; James Meschia; Chia-Ling Phuah; Arndt Rolfs; Stefan Ropele; Jonathan Rosand; Jaume Roquer; Tatjana Rundek; Ralph L Sacco; Reinhold Schmidt; Pankaj Sharma; Agnieszka Slowik; Martin Soederholm; Alessandro Sousa; Tara M Stanne; Daniel Strbian; Turgut Tatlisumak; Vincent Thijs; Achala Vagal; Johan Wasselius; Daniel Woo; Ramin Zand; Patrick McArdle; Bradford B Worrall; Christina Jern; Arne G Lindgren; Jane Maguire; Polina Golland; Danilo Bzdok; Ona Wu; Natalia S Rost
Journal:  Neurology       Date:  2022-07-08       Impact factor: 11.800

4.  Population heterogeneity in clinical cohorts affects the predictive accuracy of brain imaging.

Authors:  Oualid Benkarim; Casey Paquola; Bo-Yong Park; Valeria Kebets; Seok-Jun Hong; Reinder Vos de Wael; Shaoshi Zhang; B T Thomas Yeo; Michael Eickenberg; Tian Ge; Jean-Baptiste Poline; Boris C Bernhardt; Danilo Bzdok
Journal:  PLoS Biol       Date:  2022-04-29       Impact factor: 9.593

5.  The default network of the human brain is associated with perceived social isolation.

Authors:  R Nathan Spreng; Emile Dimas; Laetitia Mwilambwe-Tshilobo; Alain Dagher; Philipp Koellinger; Gideon Nave; Anthony Ong; Julius M Kernbach; Thomas V Wiecki; Tian Ge; Yue Li; Avram J Holmes; B T Thomas Yeo; Gary R Turner; Robin I M Dunbar; Danilo Bzdok
Journal:  Nat Commun       Date:  2020-12-15       Impact factor: 14.919

6.  Loneliness is linked to specific subregional alterations in hippocampus-default network covariation.

Authors:  Chris Zajner; R Nathan Spreng; Danilo Bzdok
Journal:  J Neurophysiol       Date:  2021-11-24       Impact factor: 2.974

7.  Connectivity alterations in autism reflect functional idiosyncrasy.

Authors:  Oualid Benkarim; Casey Paquola; Bo-Yong Park; Seok-Jun Hong; Jessica Royer; Reinder Vos de Wael; Sara Lariviere; Sofie Valk; Danilo Bzdok; Laurent Mottron; Boris C Bernhardt
Journal:  Commun Biol       Date:  2021-09-15

Review 8.  Decision Models and Technology Can Help Psychiatry Develop Biomarkers.

Authors:  Daniel S Barron; Justin T Baker; Kristin S Budde; Danilo Bzdok; Simon B Eickhoff; Karl J Friston; Peter T Fox; Paul Geha; Stephen Heisig; Avram Holmes; Jukka-Pekka Onnela; Albert Powers; David Silbersweig; John H Krystal
Journal:  Front Psychiatry       Date:  2021-09-09       Impact factor: 4.157

9.  Dissecting the midlife crisis: disentangling social, personality and demographic determinants in social brain anatomy.

Authors:  Hannah Kiesow; Lucina Q Uddin; Boris C Bernhardt; Joseph Kable; Danilo Bzdok
Journal:  Commun Biol       Date:  2021-06-17
  9 in total

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