Literature DB >> 31677956

Contact Mapping to Unravel Chromosome Folding.

Tiffany Ge1, Celeste D Rosencrance1, Kyle P Eagen2.   

Abstract

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Year:  2019        PMID： 31677956      PMCID： PMC7105279          DOI： 10.1016/j.tibs.2019.09.006

Source DB:  PubMed          Journal:  Trends Biochem Sci        ISSN： 0968-0004            Impact factor:   13.807


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  10 in total

1.  Deletion of DXZ4 on the human inactive X chromosome alters higher-order genome architecture.

Authors:  Emily M Darrow; Miriam H Huntley; Olga Dudchenko; Elena K Stamenova; Neva C Durand; Zhuo Sun; Su-Chen Huang; Adrian L Sanborn; Ido Machol; Muhammad Shamim; Andrew P Seberg; Eric S Lander; Brian P Chadwick; Erez Lieberman Aiden
Journal:  Proc Natl Acad Sci U S A       Date:  2016-07-18       Impact factor: 11.205

2.  Higher-Order Inter-chromosomal Hubs Shape 3D Genome Organization in the Nucleus.

Authors:  Sofia A Quinodoz; Noah Ollikainen; Barbara Tabak; Ali Palla; Jan Marten Schmidt; Elizabeth Detmar; Mason M Lai; Alexander A Shishkin; Prashant Bhat; Yodai Takei; Vickie Trinh; Erik Aznauryan; Pamela Russell; Christine Cheng; Marko Jovanovic; Amy Chow; Long Cai; Patrick McDonel; Manuel Garber; Mitchell Guttman
Journal:  Cell       Date:  2018-06-07       Impact factor: 41.582

3.  Capturing pairwise and multi-way chromosomal conformations using chromosomal walks.

Authors:  Pedro Olivares-Chauvet; Zohar Mukamel; Aviezer Lifshitz; Omer Schwartzman; Noa Oded Elkayam; Yaniv Lubling; Gintaras Deikus; Robert P Sebra; Amos Tanay
Journal:  Nature       Date:  2016-11-30       Impact factor: 49.962

4.  Enhancer hubs and loop collisions identified from single-allele topologies.

Authors:  Amin Allahyar; Carlo Vermeulen; Britta A M Bouwman; Peter H L Krijger; Marjon J A M Verstegen; Geert Geeven; Melissa van Kranenburg; Mark Pieterse; Roy Straver; Judith H I Haarhuis; Kees Jalink; Hans Teunissen; Ivo J Renkens; Wigard P Kloosterman; Benjamin D Rowland; Elzo de Wit; Jeroen de Ridder; Wouter de Laat
Journal:  Nat Genet       Date:  2018-07-09       Impact factor: 38.330

5.  Capturing chromosome conformation.

Authors:  Job Dekker; Karsten Rippe; Martijn Dekker; Nancy Kleckner
Journal:  Science       Date:  2002-02-15       Impact factor: 47.728

6.  Multiplex chromatin interactions with single-molecule precision.

Authors:  Meizhen Zheng; Simon Zhongyuan Tian; Daniel Capurso; Minji Kim; Rahul Maurya; Byoungkoo Lee; Emaly Piecuch; Liang Gong; Jacqueline Jufen Zhu; Zhihui Li; Chee Hong Wong; Chew Yee Ngan; Ping Wang; Xiaoan Ruan; Chia-Lin Wei; Yijun Ruan
Journal:  Nature       Date:  2019-02-18       Impact factor: 49.962

7.  A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping.

Authors:  Suhas S P Rao; Miriam H Huntley; Neva C Durand; Elena K Stamenova; Ivan D Bochkov; James T Robinson; Adrian L Sanborn; Ido Machol; Arina D Omer; Eric S Lander; Erez Lieberman Aiden
Journal:  Cell       Date:  2014-12-11       Impact factor: 41.582

8.  Comprehensive mapping of long-range interactions reveals folding principles of the human genome.

Authors:  Erez Lieberman-Aiden; Nynke L van Berkum; Louise Williams; Maxim Imakaev; Tobias Ragoczy; Agnes Telling; Ido Amit; Bryan R Lajoie; Peter J Sabo; Michael O Dorschner; Richard Sandstrom; Bradley Bernstein; M A Bender; Mark Groudine; Andreas Gnirke; John Stamatoyannopoulos; Leonid A Mirny; Eric S Lander; Job Dekker
Journal:  Science       Date:  2009-10-09       Impact factor: 47.728

9.  Complex multi-enhancer contacts captured by genome architecture mapping.

Authors:  Robert A Beagrie; Antonio Scialdone; Markus Schueler; Dorothee C A Kraemer; Mita Chotalia; Sheila Q Xie; Mariano Barbieri; Inês de Santiago; Liron-Mark Lavitas; Miguel R Branco; James Fraser; Josée Dostie; Laurence Game; Niall Dillon; Paul A W Edwards; Mario Nicodemi; Ana Pombo
Journal:  Nature       Date:  2017-03-08       Impact factor: 49.962

10.  Single-allele chromatin interactions identify regulatory hubs in dynamic compartmentalized domains.

Authors:  A Marieke Oudelaar; James O J Davies; Lars L P Hanssen; Jelena M Telenius; Ron Schwessinger; Yu Liu; Jill M Brown; Damien J Downes; Andrea M Chiariello; Simona Bianco; Mario Nicodemi; Veronica J Buckle; Job Dekker; Douglas R Higgs; Jim R Hughes
Journal:  Nat Genet       Date:  2018-10-29       Impact factor: 38.330
  10 in total
  1 in total

Review 1.  The 3D Genome: From Structure to Function.

Authors:  Tapan Kumar Mohanta; Awdhesh Kumar Mishra; Ahmed Al-Harrasi
Journal:  Int J Mol Sci       Date:  2021-10-27       Impact factor: 5.923
  1 in total

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