| Literature DB >> 31671703 |
Yogesh Yadav1,2,3, Deepti Sharma4,5, Kumar Kaushik6, Vineet Kumar7,8,9, Amitabh Jha10, Ashok K Prasad11, Christophe Len12, Sanjay V Malhotra13,14, Jesper Wengel15, Virinder S Parmar16,17,18.
Abstract
The synthesis of novel pyrazolylnucleosides 3a-e, 4a-e, 5a-e, and 6a-e are described. The structures of the regioisomers were elucidated by using extensive NMR studies. The pyrazolylnucleosides 5a-e and 6a-e were screened for anticancer activities on sixty human tumor cell lines. The compound 6e showed good activity against 39 cancer cell lines. In particular, it showed significant inhibition against the lung cancer cell line Hop-92 (GI50 9.3 µM) and breast cancer cell line HS 578T (GI50 3.0 µM).Entities:
Keywords: NCI-60; NOESY study; anticancer; modified nucleosides; pyrazolylnucleosides
Mesh:
Substances:
Year: 2019 PMID: 31671703 PMCID: PMC6864788 DOI: 10.3390/molecules24213922
Source DB: PubMed Journal: Molecules ISSN: 1420-3049 Impact factor: 4.411
Figure 1Selected nucleoside analogues with antiviral and/or antitumoral activities: 3’-azidothymidine (AZT or ZDV), showdomycin, ribavirin, pyrazofurin, formycin A and formycin B.
Scheme 1Synthesis of pyrazolylnucleoside analogues 5a–e and 6a–e.
Scheme 2Mechanistic explanation for the regioisomeric alkylation of pyrazole derivatives 1a–e. The IUPAC numbering scheme of 3a–e is retained in 4a–e (and in 5a–e and 6a–e) for easy comparison.
Chemical shift values of the anomeric protons in the 1H NMR spectra and chemical shift values of the Ar- and CH2CN bearing carbons of the pyrazole ring in the 13C NMR spectra of the isomeric pyrazolyl nucleosides 3a–e, 4a–e, 5a–e, and 6a–e in CDCl3 on a Bruker Avance 300 spectrometer.
| Compound | C-1′ H Shift in the 1H NMR Spectrum (ppm) | Ar- Bearing C Shifts in the 13C NMR Spectrum (ppm) | –CH2CN Bearing C Shifts in the 13C NMR Spectrum (ppm) | |||
|---|---|---|---|---|---|---|
| Series 3 | Series 5 | Series 3 | Series 5 | Series 3 | Series 5 | |
|
| 6.13 | 5.99 | 144.6 | 145.9 | 141.7 | 142.0 |
|
| 6.10 | 6.02 | 146.2 | 145.8 | 144.0 | 141.8 |
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| 6.05 | 5.97 | 145.4 | 144.9 | 141.9 | 141.9 |
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| 6.05 | 6.00 | 145.2 | 144.7 | 143.7 | 141.9 |
|
| 6.05 | 6.00 | 145.6 | 143.9 | 142.3 | 141.1 |
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| |
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| 6.17 | 6.13 | 151.0 | 150.2 | 137.9 | 137.7 |
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| 6.16 | 6.19 | 150.8 | 150.7 | 133.0 | 133.7 |
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| 6.17 | 6.16 | 152.5 | 149.8 | 135.8 | 135.8 |
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| 6.19 | 6.17 | 144.1 | 149.6 | 134.3 | 134.6 |
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| 6.17 | 6.18 | 149.8 | 149.2 | 133.5 | 134.9 |
Chemical shift and coupling constants from the 1H-NMR of compounds 3d, 4d, 5d, and 6d in acetone-d6.a Please refer to structures in Table 4 for skeleton numbering.
| Proton | Chemical Shifts (δ) | Coupling Constants (Hz) | ||||||
|---|---|---|---|---|---|---|---|---|
| 3d | 4d | 5d | 6d | 3d | 4d | 5d | 6d | |
| H1′ | 6.29 | 6.48 | 6.09 | 6.29 | dd 5.7, 6.5 | dd 6.5, 5.2 | t* 6.4 | t* 6.2 |
| H2′α | 2.72 | 2.79 | 2.31 | 2.42 | ddd | ddd | ddd | ddd |
| H2′β | 3.54 | 3.63 | 3.01 | 3.00 | ddd | ddd | dt* | dt* |
| H3′ | 5.93 | 5.97 | 4.66 | 4.70 | m | m | m | m |
| H4′ | 4.62 | 4.65 | 4.02 | 4.07 | m | m | m | m |
| H5′α | 4.54 | 4.45 | 3.61 | 3.59 | m | dd 13.2, 6.4 | ddd 11.8, 4.8, 7.7 | ddd 11.9, 4.1, 8.1 |
| H5′β | 4.63 | 4.63 | 3.70 | 3.71 | m | m | dt* 11.9, 4.7 | dt* 11.9,4.1 |
| H4 | 6.50 | 6.82 | 6.46 | 6.83 | brs, 1H | t* 0.8 | t* 0.5 | t 0.8 |
| H6 | 3.90 | 4.29 | 3.96 | 4.31 | brs, 2H | 19.0, 0.8 | d 0.5 | 18.9, 0.8 |
| H2″ | 7.67 | 7.87 | 7.60 | 7.87 | ||||
| H3″ | 7.57 | 7.46 | ||||||
a The chemical shift values presented in Table 2 were all measured in acetone-d6 (on an Bruker Avance 400 instrument) and may therefore differ from those in Table 1, which were measured in CDCl3 (on Bruker Avance 300 instrument). * Due to the spatial interactions between different protons as explicitly shown in Table 4, these protons exhibited multiplicities as shown here when the spectra were recorded in acetone-d6 on a Bruker Avance 400 instrument as against those recorded in CDCl3, CD3CN or DMSO-d6 as given in the Experimental section for the corresponding protons where they appeared as broad singlets or ill resolved multiplets when their spectra were recorded on a Bruker Avance 300 instrument.
Chemical shift values from the 13C-NMR of compounds 3d, 4d, 5d, and 6d in acetone-d6.a Please refer to the structures in Table 4 for skeleton numbering.
| Chemical Shifts (δ) (Carbon Position) | |||
|---|---|---|---|
| 3d | 5d | 4d | 6d |
| 87.6 (C1′) | 87.4 (C1′) | 87.6 (C1′) | 88.0 (C1′) |
| 37.1 (C2′) | 40.5 (C2′) | 37.0 (C2′) | 41.1 (C2′) |
| 76.6 (C3′) | 73.2 (C3′) | 76.1 (C3′) | 73.0 (C3′) |
| 83.5 (C4′) | 89.8 (C4′) | 83.7 (C4′) | 90.0 (C4′) |
| 65.1 (C5′) | 64.2 (C5′) | 64.7 (C5′) | 63.9 (C5′) |
| 143.8 (C3) | 143.6 (C3) | 136.3 (C3) | 136.1 (C3) |
| 107.2 (C4) | 106.7 (C4) | 105.4 (C4) | 104.9 (C4) |
| 146.0 (C5) | 145.8 (C5) | 150.6 (C5) | 150.5 (C5) |
| 17.6 (C6) | 17.6 (C6) | 15.3 (C6) | 15.2 (C6) |
| 118.1 (CN) | 118.0 (CN) | 117.0 (CN) | 117.1 (CN) |
| 166.4 (C6′′′) | 166.5 (C6′′′) | ||
| 166.5 (C6′′′′) | 166.5 (C6′′′′) | ||
| * | 129.3 (C1′′) | # | 134.2 (C1′′) |
| * | 131.6 (C2′′) | # | 127.9 (C2′′) |
| * | 129.9 (C3′′) | # | 129.7 (C3′′) |
| * | 135.6 (C4′′) | # | 132.6 (C4′′) |
a The chemical shift values presented in Table 3 were all measured in acetone-d6 (on an Bruker Avance 400 instrument) and may therefore differ from those in Table 1, which were measured in CDCl3 (on Bruker Avance 300 instrument). * Benzene ring Carbons: Quaternary C: 145.0, 144.7, 135.6, 129.3, 128.3, 128.1; CHs: 131.6, 130.5, 130.5, 130.0, 130.0, 129.9. # Benzene ring Carbons: Quaternary C: 145.0, 144.5, 134.1, 132.7, 128.1; CHs: 130.5, 130.4, 130.1, 129.9, 129.5.
Results from the NOESY and HMBC spectra of the pairs 3d–4d and 5d–6d *.
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|
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| NOESY H1′-H6 | o |
| o |
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| NOESY H1′-H2′′ |
| o |
| o |
| NOESY H4-H2′′ | x | x | x | x |
| HMBC H1′-C5 |
| o |
| o |
| HMBC H1′-C3 | o |
| o |
|
* The presence of a cross peak is indicated by (x). When it contributes to the positional verification, it is underlined (x). See Table 1, Table 2 and Table 3 for positions of the relevant protons and carbons in the NMR spectra of the compounds 3d, 4d, 5d and 6d.
Antitumor activity (GI50/µM) a and toxicity (LC50/µM) b data of 6d and 6e with the anticancer drug dasatinib as a positive control.
| Panels/Cell Lines | 6d | 6e | Dasatinib | |||
|---|---|---|---|---|---|---|
| GI50 | LC50 | GI50 | LC50 | GI50 | LC50 | |
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| CCRF-CEM | >67.5 | >67.5 | 46.3 | >57.5 | 5.3 | >100 |
| K-562 | >67.5 | >67.5 | 40.0 | >57.5 | 0.01 | >100 |
| MOLT-4 | >67.5 | >67.5 | 30.9 | >57.5 | 4.1 | >100 |
| RPMI-8226 | >67.5 | >67.5 | 34.0 | >57.5 | 4.8 | 99.5 |
| SR | >67.5 | >67.5 | 25.5 | >57.5 | 3.1 | 89.3 |
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| A549/ATCC | 44.8 | >67.5 | 29.3 | >57.5 | 0.05 | 75.5 |
| HOP-92 | >67.5 | >67.5 | 9.3 | >57.5 | 0.01 | >100 |
| NCI-H322M | 29.8 | >67.5 | 30.2 | >57.5 | 0.04 | 27.0 |
| NCI-H522 | >67.5 | >67.5 | 25.7 | >57.5 | 0.06 | 55.1 |
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| HCT-116 | >67.5 | >67.5 | 47.7 | >57.5 | 11.8 | 69.8 |
| HCT-15 | >67.5 | >67.5 | 45.1 | >57.5 | 0.6 | 71.1 |
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| ||||||
| SF-268 | 33.5 | >67.5 | 20.5 | >57.5 | 0.07 | 75.5 |
| SF-295 | >67.5 | >67.5 | 24.8 | >57.5 | 1.1 | 46.8 |
| SNB-19 | 24.6 | >67.5 | 18.5 | >57.5 | 11.9 | 76.4 |
| SNB-75 | 53.5 | >67.5 | 10.5 | >57.5 | 0.01 | 46.3 |
| U251 | >67.5 | >67.5 | 36.4 | >57.5 | 3.2 | 52.4 |
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| LOX IMVI | >67.5 | >67.5 | 49.7 | >57.5 | 0.01 | 2.8 |
| M14 | >67.5 | >67.5 | 57.1 | >57.5 | 3.1 | 51.5 |
| MDA-MB-435 | >67.5 | >67.5 | 53.0 | >57.5 | 4.1 | 65.5 |
| SK-MEL-2 | >67.5 | >67.5 | 39.6 | >57.5 | 1.1 | 71.8 |
| SK-MEL-5 | 60.9 | >67.5 | 11.8 | >57.5 | 4.5 | 44.3 |
| UACC-62 | 37.8 | >67.5 | 10.5 | >57.5 | 2.8 | 47.0 |
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| IGROV1 | 32.6 | >67.5 | 21.5 | >57.5 | 0.01 | 80.0 |
| OVCAR-3 | >67.5 | >67.5 | 39.1 | >57.5 | 0.2 | 74.6 |
| OVCAR-5 | >67.5 | >67.5 | 44.4 | >57.5 | 0.02 | 86.3 |
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| A498 | 22.6 | >67.5 | 18.8 | >57.5 | 0.03 | 16.0 |
| ACHN | >67.5 | >67.5 | 45.1 | >57.5 | 0.01 | 520 |
| CAK-1 | 22.9 | >67.5 | 18.8 | >57.5 | 0.01 | 5.1 |
| RXF 393 | 38.0 | >67.5 | 34.6 | >57.5 | 0.03 | 10.4 |
| SN12C | 48.4 | >67.5 | 24.3 | >57.5 | 0.05 | 44.4 |
| UO-31 | 19.4 | >67.5 | 16.6 | >57.5 | 0.01 | 82.0 |
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| PC-3 | 37.4 | >67.5 | 20.0 | >57.5 | 0.2 | 92.5 |
| DU-145 | >67.5 | >67.5 | 45.1 | >57.5 | 0.1 | 4.9 |
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| MCF7 | 48.0 | >67.5 | 32.8 | >57.5 | 12.6 | 71.4 |
| MDA-MB-231ATCC | >67.5 | >67.5 | 55.8 | >57.5 | 0.01 | 38.0 |
| HS 578T | 16.6 | >67.5 | 3.0 | >57.5 | 0.01 | >100 |
| BT-549 | 49.9 | >67.5 | 30.0 | >57.5 | 5.9 | 49.8 |
| T-47D | 26.6 | >67.5 | 19.4 | >57.5 | 0.2 | 91.4 |
| MDA-MB-468 | 31.6 | >67.5 | 13.8 | >57.5 | 0.09 | 8.4 |
a GI50: 50% Growth inhibition, concentration of drug resulting in a 50% reduction in net protein increase when compared with the control cells. b LC50: Lethal concentration, concentration of drug lethal to 50% of cells.