| Literature DB >> 31662620 |
Thatsanee Luangharn1,2,3,4, Samantha C Karunarathna1,3,4, Peter E Mortimer1,4, Kevin D Hyde3,5, Jianchu Xu1,3,4.
Abstract
Ganoderma is a cosmopolitan genus of mushrooms, which can cause root and butt rot diseases on many tree species. Members of this genus are particularly diverse in tropical regions. Some Ganoderma spp. are medicinally active and therefore are used to treat human diseases or as a dietary supplement. In this study, three Ganoderma strains were collected in tropical southern Thailand. Phylogenetic analyses of combined ITS, LSU, TEF1α and RPB2 sequence data indicated that the three strains grouped in a distinct lineage within laccate Ganoderma. One strain was collected from Surat Thani Province clustered in the G. casuarinicola clade with high statistical support (MLBS = 100% / MPBS = 98% / PP = 0.96), while the other two strains of Ganoderma, collected from Nakhon Si Thammarat Province, formed a distinct well-supported clade (MLBS = 100% / MPBS = 100% / PP = 1.00) and are described here as a new species. Ganoderma casuarinicola is reported here as a new record to Thailand. Morphological differences of the two taxa and their closely related taxa are discussed. Colour photographs of macro and micro morphological characteristics and a phylogenetic tree to show the placement of the new record and new species are provided. Thatsanee Luangharn, Samantha C. Karunarathna, Peter E. Mortimer, Kevin D. Hyde, Jianchu Xu.Entities:
Keywords: Ganodermataceae ; medicinal mushroom; molecular phylogeny; morphological characteristics; new species; white rot
Year: 2019 PMID: 31662620 PMCID: PMC6811390 DOI: 10.3897/mycokeys.59.36823
Source DB: PubMed Journal: MycoKeys ISSN: 1314-4049 Impact factor: 2.984
Details of the taxa used in the phylogenetic analysis of this study. The newly generated sequences are in bold.
| Fungal species | Voucher | GenBank accession no. | References | |||
|---|---|---|---|---|---|---|
|
|
|
| RPB2 | |||
|
| Cui 13817 |
| – |
|
|
|
|
| Cui 14578 |
| – |
| – |
|
|
| Dai 12588 |
| – |
| – |
|
|
| WD 2028 |
|
|
|
|
|
| WD 2085 |
| – |
|
|
| |
|
| DMC 322 |
| – | – | – |
|
| DMC 513 |
| – | – | – |
| |
|
| Dai16336 |
| – |
|
|
|
| Dai16337 |
| – |
|
|
| |
| Dai16338 |
| – |
|
|
| |
| Dai16339 |
| – |
|
|
| |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
|
| ASL799 |
|
| – | – |
|
| PMC126 |
|
| – | – |
| |
|
| Dai 15970 |
| – |
|
|
|
| Dai 15971 |
| – |
|
|
| |
|
| Dai 11995 |
| – |
|
|
|
| Yuan 6337 |
| – |
|
|
| |
| Cui 13982 |
| – |
|
|
| |
|
| Dai 15601 | – | – | – |
|
|
| GDGM 44303 |
| – | – | – |
| |
| GDGM 40200 |
| – | – | – |
| |
|
| JV 1008/31 |
| – |
|
|
|
| JV 1008/32 |
| – |
|
|
| |
|
| K175217 |
| – |
|
|
|
| Cui 14404 |
| – |
|
|
| |
| Cui 14405 |
| – |
|
|
| |
|
| Wu1006-38 |
| – |
|
|
|
| Cui 14342 |
| – |
|
|
| |
|
| LIP SWMart 08-55 |
| – | – | – |
|
| LIP SWMart 08-44 |
| – | – | – |
| |
|
| UMN7-3 GHA |
|
| – | – |
|
| UMN7-4 GHA |
|
| – | – |
| |
|
| CWN 04670 |
| – |
|
|
|
| Dai 9447 |
| – |
|
|
| |
|
| Cui 13918 |
| – |
|
|
|
|
| HMAS86599 |
| – | – |
| GenBank |
| CBS 194.76 |
| – |
| – |
| |
|
|
| – | – | – |
| |
|
| – | – | – |
| ||
|
| JV1209/9 |
| – |
| - |
|
| JV 1209/27 |
| – |
|
|
| |
|
| HMAS 42798 |
| – | – | – |
|
| CGMCC 5.2175 |
| – | – | – |
| |
|
| Wei5327 |
|
|
|
|
|
|
| Yuan 3490 |
| – |
| – |
|
| Dai 16434 |
| – |
|
|
| |
|
| CBS428.84 |
| – | – | – |
|
|
| Dai 16809 |
| – |
|
|
|
| Wei5032 |
|
| – | – |
| |
|
| FL-02 |
| – |
|
|
|
| FL-03 |
| – |
|
|
| |
|
| Cui 9011 |
| – |
| – |
|
|
| TC-02 |
| – |
|
|
|
Figure 1.Phylogram of , obtained from maximum likelihood (RAxML) of combined ITS, LSU, TEF1α and RPB2 datasets. Bootstrap values (BS) from maximum likelihood (ML, left) and Maximum parsimony (MP, middle) greater than 70% and Bayesian posterior probabilities (PP), greater than 0.95, are indicated above the nodes as MLBS/MPBS/PP. The tree is rooted with Cui 9011 and TC-02. New species and new records are indicated in black bold.
Figure 2.Morphology of (HKAS 104639) A The upper surface of mature basidiocarp B the lower surface of mature basidiocarp C pore characteristics D melanoid bands in the context tissue E, F culture after incubation at 25 °C for 10–14 days on Potato Dextrose Agar (PDA) G–J basidiospores in KOHK clamp connections L thick walled unbranched generative hyphae of context in KOHM, N thin-thick-walled unbranched generative and flexuous skeletal hyphae O thick-walled generative and skeletal hyphae of the tube layers. Scale bars: 2 cm (A, B); 500 µm (C); 2 cm (E, F); 2 µm (G–J); 5 µm (K); 3 µm (L–O).
Figure 3.Morphological characteristics of (HKAS 104640, HKAS 104641). A, B Mature basidiocarps (HKAS 104640) C lower surface of mature basidiocarp (HKAS 104640) D, E development of young to mature fruiting bodies (HKAS 104641) F lower surface (HKAS 104641) G clamp connections H thick-walled unbranched generative hyphae with clamp connections of context in KOHI thick-walled, skeletal hyphae in KOH without septa J thick-walled sparingly branched skeletal hyphae in Melzer’s reagent K hyphae of tube layers L–Q basidiospores in 3% Congo red reagent. Scale bars: 2 cm (A–F); 10 µm (G); 15 µm (H–K); 3 µm (L–P); 5 µm (Q).