Literature DB >> 36059897

Species diversity, systematic revision and molecular phylogeny of Ganodermataceae (Polyporales, Basidiomycota) with an emphasis on Chinese collections.

Y-F Sun1, J-H Xing1, X-L He2, D-M Wu3, C-G Song1, S Liu1, J Vlasák4, G Gates5, T B Gibertoni6, B-K Cui1.   

Abstract

Ganodermataceae is one of the main families of macrofungi since species in the family are both ecologically and economically important. The double-walled basidiospores with ornamented endospore walls are the characteristic features of Ganodermataceae. It is a large and complex family; although many studies have focused on Ganodermataceae, the global diversity, geographic distribution, taxonomy and molecular phylogeny of Ganodermataceae still remained incompletely understood. In this work, taxonomic and phylogenetic studies on worldwide species of Ganodermataceae were carried out by morphological examination and molecular phylogenetic analyses inferred from six gene loci including the internal transcribed spacer regions (ITS), the large subunit of nuclear ribosomal RNA gene (nLSU), the second largest subunit of RNA polymerase II gene (rpb2), the translation elongation factor 1-α gene (tef1), the small subunit mitochondrial rRNA gene (mtSSU) and the small subunit nuclear ribosomal RNA gene (nSSU). A total of 1 382 sequences were used in the phylogenetic analyses, of which 817 were newly generated, including 132 sequences of ITS, 139 sequences of nLSU, 83 sequences of rpb2, 124 sequences of tef1, 150 sequences of mtSSU and 189 sequences of nSSU. The combined six-gene dataset included sequences from 391 specimens representing 146 taxa from Ganodermataceae. Based on morphological and phylogenetic analyses, 14 genera were confirmed in Ganodermataceae: Amauroderma, Amaurodermellus, Cristataspora, Foraminispora, Furtadoella, Ganoderma, Haddowia, Humphreya, Magoderna, Neoganoderma, Sanguinoderma, Sinoganoderma, Tomophagus and Trachydermella. Among these genera, Neoganoderma gen. nov. is proposed for Ganoderma neurosporum; Sinoganoderma gen. nov. is proposed for Ganoderma shandongense; Furtadoella gen. nov. is proposed to include taxa previously belonging to Furtadoa since Furtadoa is a homonym of a plant genus in the Araceae; Trachydermella gen. nov. is proposed to include Trachyderma tsunodae since Trachyderma is a homonym of a lichen genus in the Pannariaceae. Twenty-three new species, viz., Ganoderma acaciicola, G. acontextum, G. alpinum, G. bubalinomarginatum, G. castaneum, G. chuxiongense, G. cocoicola, G. fallax, G. guangxiense, G. puerense, G. subangustisporum, G. subellipsoideum, G. subflexipes, G. sublobatum, G. tongshanense, G. yunlingense, Haddowia macropora, Sanguinoderma guangdongense, Sa. infundibulare, Sa. longistipitum, Sa. melanocarpum, Sa. microsporum and Sa. tricolor are described. In addition, another 33 known species are also described in detail for comparison. Scanning electron micrographs of basidiospores of 10 genera in Ganodermataceae are provided. A key to the accepted genera of Ganodermataceae and keys to the accepted species of Ganoderma, Haddowia, Humphreya, Magoderna, Sanguinoderma and Tomophagus are also provided. In total, 278 species are accepted as members of Ganodermataceae including 59 species distributed in China. Taxonomic novelties: New genera: Furtadoella B.K. Cui & Y.F. Sun, Neoganoderma B.K. Cui & Y.F. Sun, Sinoganoderma B.K. Cui, J.H. Xing & Y.F. Sun and Trachydermella B.K. Cui & Y.F. Sun; New species: Ganoderma acaciicola B.K. Cui, J.H. Xing & Y.F. Sun, G. acontextum B.K. Cui, J.H. Xing & Vlasák, G. alpinum B.K. Cui, J.H. Xing & Y.F. Sun, G. bubalinomarginatum B.K. Cui, J.H. Xing & Y.F. Sun, G. castaneum B.K. Cui, J.H. Xing & Y.F. Sun, G. chuxiongense B.K. Cui, J.H. Xing & Y.F. Sun, G. cocoicola B.K. Cui, J.H. Xing & Y.F. Sun, G. fallax B.K. Cui, J.H. Xing & Vlasák, G. guangxiense B.K. Cui, J.H. Xing & Y.F. Sun, G. puerense B.K. Cui, J.H. Xing & Y.F. Sun, G. subangustisporum B.K. Cui, J.H. Xing & Y.F. Sun, G. subellipsoideum B.K. Cui, J.H. Xing & Y.F. Sun, G. subflexipes B.K. Cui, J.H. Xing & Y.F. Sun, G. sublobatum B.K. Cui, J.H. Xing & Y.F. Sun, G. tongshanense B.K. Cui, J.H. Xing & Y.F. Sun, G. yunlingense B.K. Cui, J.H. Xing & Y.F. Sun, Haddowia macropora B.K. Cui, Vlasák & Y.F. Sun, Sanguinoderma guangdongense B.K. Cui & Y.F. Sun, Sa. infundibulare B.K. Cui & Y.F. Sun, Sa. longistipitum B.K. Cui & Y.F. Sun, Sa. melanocarpum B.K. Cui & Y.F. Sun, Sa. microsporum B.K. Cui & Y.F. Sun and Sa. tricolor B.K. Cui & Y.F. Sun; New combinations: Furtadoella biseptata (Costa-Rezende et al.) B.K. Cui & Y.F. Sun, Fu. brasiliensis (Singer) B.K. Cui & Y.F. Sun, Fu. corneri (Gulaid & Ryvarden) B.K. Cui & Y.F. Sun, Neoganoderma neurosporum (J.S. Furtado) B.K. Cui & Y.F. Sun, Sinoganoderma shandongense (J.D. Zhao & L.W. Xu) B.K. Cui, J.H. Xing & Y.F. Sun and Trachydermella tsunodae (Yasuda ex Lloyd) B.K. Cui & Y.F. Sun. Citation: Sun Y-F, Xing J-H, He X-L, Wu D-M, Song C-G, Liu S, Vlasák J, Gates G, Gibertoni TB, Cui B-K (2022). Species diversity, systematic revision and molecular phylogeny of Ganodermataceae (Polyporales, Basidiomycota) with an emphasis on Chinese collections. Studies in Mycology 101: 287-415. doi: 10.3114/sim.2022.101.05.
© 2022 Westerdijk Fungal Biodiversity Institute.

Entities:  

Keywords:  Ganoderma; macro fungi; medicinal mushrooms; new taxa; phylogeny; ultrastructure; white-rot fungi

Year:  2022        PMID: 36059897      PMCID: PMC9365044          DOI: 10.3114/sim.2022.101.05

Source DB:  PubMed          Journal:  Stud Mycol        ISSN: 0166-0616            Impact factor:   25.731


  42 in total

1.  Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi.

Authors:  Conrad L Schoch; Keith A Seifert; Sabine Huhndorf; Vincent Robert; John L Spouge; C André Levesque; Wen Chen
Journal:  Proc Natl Acad Sci U S A       Date:  2012-03-27       Impact factor: 11.205

2.  A revised family-level classification of the Polyporales (Basidiomycota).

Authors:  Alfredo Justo; Otto Miettinen; Dimitrios Floudas; Beatriz Ortiz-Santana; Elisabet Sjökvist; Daniel Lindner; Karen Nakasone; Tuomo Niemelä; Karl-Henrik Larsson; Leif Ryvarden; David S Hibbett
Journal:  Fungal Biol       Date:  2017-06-16

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Authors:  Li-Wei Zhou; Yun Cao; Sheng-Hua Wu; Josef Vlasák; De-Wei Li; Meng-Jie Li; Yu-Cheng Dai
Journal:  Phytochemistry       Date:  2014-10-25       Impact factor: 4.072

4.  Delimitation of some neotropical laccate Ganoderma (Ganodermataceae): molecular phylogeny and morphology.

Authors:  Nelson Correia De Lima Júnior; Tatiana Baptista Gibertone; Elaine Malosso
Journal:  Rev Biol Trop       Date:  2014-09       Impact factor: 0.723

5.  Fungal Planet description sheets: 785-867.

Authors:  P W Crous; J J Luangsa-Ard; M J Wingfield; A J Carnegie; M Hernández-Restrepo; L Lombard; J Roux; R W Barreto; I G Baseia; J F Cano-Lira; M P Martín; O V Morozova; A M Stchigel; B A Summerell; T E Brandrud; B Dima; D García; A Giraldo; J Guarro; L F P Gusmão; P Khamsuntorn; M E Noordeloos; S Nuankaew; U Pinruan; E Rodríguez-Andrade; C M Souza-Motta; R Thangavel; A L van Iperen; V P Abreu; T Accioly; J L Alves; J P Andrade; M Bahram; H-O Baral; E Barbier; C W Barnes; E Bendiksen; E Bernard; J D P Bezerra; J L Bezerra; E Bizio; J E Blair; T M Bulyonkova; T S Cabral; M V Caiafa; T Cantillo; A A Colmán; L B Conceição; S Cruz; A O B Cunha; B A Darveaux; A L da Silva; G A da Silva; G M da Silva; R M F da Silva; R J V de Oliveira; R L Oliveira; J T De Souza; M Dueñas; H C Evans; F Epifani; M T C Felipe; J Fernández-López; B W Ferreira; C N Figueiredo; N V Filippova; J A Flores; J Gené; G Ghorbani; T B Gibertoni; A M Glushakova; R Healy; S M Huhndorf; I Iturrieta-González; M Javan-Nikkhah; R F Juciano; Ž Jurjević; A V Kachalkin; K Keochanpheng; I Krisai-Greilhuber; Y-C Li; A A Lima; A R Machado; H Madrid; O M C Magalhães; P A S Marbach; G C S Melanda; A N Miller; S Mongkolsamrit; R P Nascimento; T G L Oliveira; M E Ordoñez; R Orzes; M A Palma; C J Pearce; O L Pereira; G Perrone; S W Peterson; T H G Pham; E Piontelli; A Pordel; L Quijada; H A Raja; E Rosas de Paz; L Ryvarden; A Saitta; S S Salcedo; M Sandoval-Denis; T A B Santos; K A Seifert; B D B Silva; M E Smith; A M Soares; S Sommai; J O Sousa; S Suetrong; A Susca; L Tedersoo; M T Telleria; D Thanakitpipattana; N Valenzuela-Lopez; C M Visagie; M Zapata; J Z Groenewald
Journal:  Persoonia       Date:  2018-12-14       Impact factor: 11.051

6.  Fungal Planet description sheets: 371-399.

Authors:  P W Crous; M J Wingfield; J J Le Roux; D M Richardson; D Strasberg; R G Shivas; P Alvarado; J Edwards; G Moreno; R Sharma; M S Sonawane; Y P Tan; A Altés; T Barasubiye; C W Barnes; R A Blanchette; D Boertmann; A Bogo; J R Carlavilla; R Cheewangkoon; R Daniel; Z W de Beer; M de Jesús Yáñez-Morales; T A Duong; J Fernández-Vicente; A D W Geering; D I Guest; B W Held; M Heykoop; V Hubka; A M Ismail; S C Kajale; W Khemmuk; M Kolařík; R Kurli; R Lebeuf; C A Lévesque; L Lombard; D Magista; J L Manjón; S Marincowitz; J M Mohedano; A Nováková; N H Oberlies; E C Otto; N D Paguigan; I G Pascoe; J L Pérez-Butrón; G Perrone; P Rahi; H A Raja; T Rintoul; R M V Sanhueza; K Scarlett; Y S Shouche; L A Shuttleworth; P W J Taylor; R G Thorn; L L Vawdrey; R Solano-Vidal; A Voitk; P T W Wong; A R Wood; J C Zamora; J Z Groenewald
Journal:  Persoonia       Date:  2015-12-04       Impact factor: 11.051

7.  Effectiveness of ITS and sub-regions as DNA barcode markers for the identification of Basidiomycota (Fungi).

Authors:  Fernanda Badotti; Francislon Silva de Oliveira; Cleverson Fernando Garcia; Aline Bruna Martins Vaz; Paula Luize Camargos Fonseca; Laila Alves Nahum; Guilherme Oliveira; Aristóteles Góes-Neto
Journal:  BMC Microbiol       Date:  2017-02-23       Impact factor: 3.605

8.  The Ganoderma weberianum-resinaceum lineage: multilocus phylogenetic analysis and morphology confirm G. mexicanum and G. parvulum in the Neotropics.

Authors:  Milay Cabarroi-Hernández; Alma Rosa Villalobos-Arámbula; Cony Decock; Laura Guzmán-Dávalos
Journal:  MycoKeys       Date:  2019-10-29       Impact factor: 2.984

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