| Literature DB >> 31657512 |
Ravindra Pal Singh1,2, Giulia Pergolizzi1, Sergey A Nepogodiev1, Peterson de Andrade1, Sakonwan Kuhaudomlarp1, Robert A Field1,3.
Abstract
The enzymatic synthesis of oligosaccharides depends on the availability of suitable enzymes, which remains a limitation. Without recourse to enzyme engineering or evolution approaches, herein we demonstrate the ability of wild-type cellodextrin phosphorylase (Entities:
Keywords: enzymatic synthesis; glycans; oligosaccharides; phosphorylases
Mesh:
Substances:
Year: 2019 PMID: 31657512 PMCID: PMC7187349 DOI: 10.1002/cbic.201900440
Source DB: PubMed Journal: Chembiochem ISSN: 1439-4227 Impact factor: 3.164
Figure 1Representative reactions catalysed by CDP and Pro_7066 with glucose‐1‐phosphate (Glc1P) as donor and either cellobiose or laminaribiose as acceptor.
Kinetic parameters of cellodextrin phosphorylase (CDP) and laminarin phosphorylase (Pro_7066)
|
Enzyme |
Donor |
Acceptor |
|
|
|
Relative |
|---|---|---|---|---|---|---|
|
|
|
|
[mm] |
[s−1] |
[s−1 mm−1] |
|
|
CDP |
Glc1P |
|
3.0±0.3 |
15.9±0.4 |
5.3 |
100 |
|
|
3.0±0.6 |
16.4±0.7 |
5.5 |
100 | ||
|
Gal1P |
|
10.7±0.7 |
0.60±0.01 |
0.06 |
1.1 | |
|
|
9.3±1.1 |
0.60±0.02 |
0.06 |
1.1 | ||
|
GlcN1P |
|
5.1±1.2 |
0.14±0.013 |
0.03 |
0.6 | |
|
|
1.6±0.2 |
0.08±0.003 |
0.05 |
0.9 | ||
|
Man1P |
|
n.a. |
n.a. |
n.a. |
n.a. | |
|
|
n.a. |
n.a. |
n.a. |
n.a. | ||
|
Pro_7066 |
Glc1P |
|
3.1±0.7 |
9.3±0.5 |
3.0 |
100 |
|
|
2.5±0.7 |
10.6±0.6 |
4.2 |
100 | ||
|
Gal1P |
|
31.6±2.4 |
0.46±0.02 |
0.015 |
0.5 | |
|
|
136.4±23.6 |
0.77±0.10 |
0.006 |
0.1 | ||
|
GlcN1P |
|
0.05±0.01 |
0.09±0.002 |
1.8 |
60 | |
|
|
0.04±0.01 |
0.04±0.001 |
1.0 |
24 | ||
|
Man1P |
|
2.5±0.2 |
0.15±0.006 |
0.060 |
2 | |
|
|
1.7±0.7 |
0.03±0.004 |
0.018 |
0.4 |
n.a.: not applicable. All the reactions were performed in triplicate.
Figure 2Comparison between the active sites of A) CDP (PDB ID: 5NZ8) and B) Pro_7066 (PDB ID: 6HQ6). C) Superposition of CDP (blue backbone) and Pro_7066 (beige backbone). Both proteins are homodimers; one subunit is shown in blue (for CDP) or beige (in Pro_7066) and the adjacent subunits in grey. Protein backbones are shown in cartoon representation, and ligands and protein side chains in cylinder form. Phosphate is coloured in pink, sulfate in brown, oxygen in red and carbon on cellotetraose and BICINE in green. Catalytic residues are underlined, and the cleavage site in CDP is indicated by asterisk in (A). The binding subsites are indicated by numbers. The amino acids in (C) are labelled in red for Pro_7066 and blue for CDP.
Cellodextrin phosphorylase (CDP)‐catalysed syntheses of oligosaccharides 9–17 using acceptors 1–8 and Gal1P and GlcN1P as glycosyl donors.
|
| ||||
|---|---|---|---|---|
|
Donor |
Acceptor |
R |
Product |
Yield [%] |
|
|
|
|
|
95 |
|
|
|
|
70 | |
|
|
|
|
60 | |
|
|
|
|
81 | |
|
|
|
|
60 | |
|
|
|
|
31 | |
|
|
|
|
19 | |
|
|
|
|
16 | |
|
|
|
|
|
88 |
The structures of all enzymatically synthesised oligosaccharides were confirmed by HRMS (ESI) and 1H and 13C NMR spectroscopy. Only two of these compounds have previously been described in the literature: tri‐ and tetrasaccharides 9 and 11 were synthesised by using the loose acceptor specificity of β‐1,4‐galactosyltransferase.24
Pro_7066‐catalysed syntheses of oligosaccharides 19–25 with acceptors 1–4 and 18 and Gal1P, GlcN1P and Man1P as glycosyl donors.
|
| ||||
|---|---|---|---|---|
|
Donor |
Acceptor |
R |
Product |
Yield [%] |
|
|
|
|
|
38[a] |
|
|
|
|
22[a] | |
|
|
|
|
77 | |
|
|
|
|
47 | |
|
|
|
|
80 | |
|
|
|
|
|
74 |
|
|
|
|
|
94 |
[a] Low yield due to acceptor phosphorolysis. Disaccharide 19 was previously reported as a product of Acetobacter exopolysaccharide fragmentation.23
Figure 3Phosphorylase‐catalysed galactosylation of β‐linked glucose disaccharide substrates by Pro_7066 results in the formation of a series of extended glucans capped with a β‐Gal residue. i) Trisaccharide formation accompanied with release of inorganic phosphate Pi; ii) generation of Glc1P; iii) disproportionation of β‐linked glucose disaccharide, priming the formation of glucose‐based oligosaccharides; iv) galactosylation of extended glucose‐based oligosaccharides with Gal1P.