| Literature DB >> 31636969 |
Rohit B Manawar1, Mitesh B Gondaliya1, Manish K Shah1, Mukesh M Jotani2, Edward R T Tiekink3.
Abstract
The title Schiff base compound, C14H10Cl2N2O, features an E configuration about each of the C=N imine bonds. Overall, the mol-ecule is approximately planar with the dihedral angle between the central C2N2 residue (r.m.s. deviation = 0.0371 Å) and the peripheral hy-droxy-benzene and chloro-benzene rings being 4.9 (3) and 7.5 (3)°, respectively. Nevertheless, a small twist is evident about the central N-N bond [the C-N-N-C torsion angle = -172.7 (2)°]. An intra-molecular hy-droxy-O-H⋯N(imine) hydrogen bond closes an S(6) loop. In the crystal, π-π stacking inter-actions between hy-droxy- and chloro-benzene rings [inter-centroid separation = 3.6939 (13) Å] lead to a helical supra-molecular chain propagating along the b-axis direction; the chains pack without directional inter-actions between them. The calculated Hirshfeld surfaces point to the importance of H⋯H and Cl⋯H/H⋯Cl contacts to the overall surface, each contributing approximately 29% of all contacts. However, of these only Cl⋯H contacts occur at separations less than the sum of the van der Waals radii. The aforementioned π-π stacking inter-actions contribute 12.0% to the overall surface contacts. The calculation of the inter-action energies in the crystal indicates significant contributions from the dispersion term. © Manawar et al. 2019.Entities:
Keywords: Hirshfeld surface analysis; Schiff base; computational chemistry; crystal structure
Year: 2019 PMID: 31636969 PMCID: PMC6775727 DOI: 10.1107/S2056989019012349
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1The molecular structure of (I) showing the atom-labelling scheme and displacement ellipsoids at the 35% probability level.
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| O1—H1O⋯N1 | 0.87 (3) | 1.87 (3) | 2.632 (2) | 147 (3) |
Figure 2Molecular packing in the crystal of (I): (a) supramolecular chain sustained by π(hydroxybenzene)–π(chlorobenzene) interactions shown as purple dashed lines and (b) a view of the unit-cell contents in a projection down the b axis.
Figure 3A view of the Hirshfeld surface for (I) mapped over d norm in the range −0.001 to + 1.301 (arbitrary units), highlighting diminutive red spots near the C2 and C12 atoms owing to their participation in C⋯C contacts.
Summary of short interatomic contacts (Å) in (I)
| Contact | Distance | Symmetry operation |
|---|---|---|
| Cl1⋯H6 | 2.86 | − |
| Cl2⋯H4 | 2.85 |
|
| O1⋯H7 | 2.68 |
|
| C2⋯C12 | 3.399 (3) | 1 − |
Note: (a) The interatomic distances were calculated using Crystal Explorer 17 (Turner et al., 2017 ▸) whereby the X—H bond lengths are adjusted to their neutron values.
Figure 4A view of the Hirshfeld surface mapped over the electrostatic potential (the red and blue regions represent negative and positive electrostatic potentials, respectively) in the range −0.065 to + 0.039 atomic units, with short interatomic Cl⋯H and O⋯H contacts highlighted with red and black dashed dashed lines, respectively.
Figure 5A view of Hirshfeld surface mapped with curvedness showing edge-to-edge π–π overlap through black dashed lines.
Figure 6(a) A comparison of the full two-dimensional fingerprint plot for (I) and those delineated into (b) H⋯H, (c) O⋯H/H⋯O, (d) Cl⋯H/H⋯Cl, (e) C⋯C and (f) C⋯H/H⋯C contacts.
Percentage contributions of interatomic contacts to the Hirshfeld surface for (I)
| Contact | Percentage contribution |
|---|---|
| H⋯H | 29.4 |
| Cl⋯H/H⋯Cl | 29.1 |
| O⋯H/H⋯O | 7.4 |
| C⋯H/H⋯C | 12.0 |
| C⋯C | 12.0 |
| N⋯H/H⋯N | 4.5 |
| C⋯N/N⋯C | 3.9 |
| C⋯Cl/Cl⋯C | 0.6 |
| Cl⋯Cl | 0.4 |
| Cl⋯N/N⋯Cl | 0.4 |
| Cl⋯O/O⋯Cl | 0.1 |
| C⋯O/O⋯C | 0.1 |
Summary of interaction energies (kJ mol−1) calculated for (I)
| Contact |
|
|
|
|
|
|
|---|---|---|---|---|---|---|
| C2⋯C12i | 4.00 | −13.1 | −1.4 | −77.2 | 42.7 | −55.8 |
|
| 8.58 | −5.9 | −0.9 | −40.1 | 20.6 | −29.2 |
| Cl1⋯H6iii + | ||||||
| Cl2⋯H4iv + | 8.53 | −10.4 | −1.8 | −20.9 | 19.1 | −18.7 |
| O1⋯H7iv |
Symmetry codes: (i) 1 − x, −y, 1 − z; (ii) − x, + y, − z; (iii) − + x, − y, − + z; (iv) + x, − y, + z.
Figure 7The energy frameworks calculated for (I) showing the (a) electrostatic potential force, (b) dispersion force and (c) total energy. The energy frameworks were adjusted to the same scale factor of 50 with a cut-off value of 5 kJ mol−1 within 4 × 4 × 4 unit cells
Geometric data (°) for related 2-OH—C6—C(H)=N—N=C(H)—C6 molecules, i.e. R 1—C(H)=N—N=C(H)—R 2
| Compound |
|
| C—N—N—C | C2N2/ | C2N2/ |
| REFCODE |
|---|---|---|---|---|---|---|---|
| (I) | 2-OH—C6H4 | 2,6-Cl2—C6H3 | −172.7 (2) | 4.9 (3) | 7.5 (3) | 4.83 (13) | – |
| (II) | 2-OH—C6H4 | anthracen-9-yl | 179.1 (2) | 2.84 (13) | 29.03 (16) | 31.35 (8) | KOBXAD |
| (III) | 2-OH—C6H4 | 2-EtOC(=O)CH2—C6H4 | 173.32 (14) | 7.25 (9) | 20.02 (9) | 27.26 (5) | LOSJIO |
| (IV) | 2,3-(OH)2-4,6-( | 4-Me2NC6H4 | −178.09 (12) | 10.58 (4) | 4.61 (4) | 15.03 (3) | EDIQOA |
| (V) | 2-naphthol | 4-Me2N—C6H4 | −179.8 (2) | 2.27 (9) | 6.49 (13) | 7.84 (6) | EZUYEF |
| (VI) | 2-naphthol | 4-OH—C6H4 | 179.30 (16) | 3.93 (12) | 8.44 (12) | 11.91 (6) | RUTGEU |
| (VII) | 2-naphthol | 4-Me2N—C6H4 | 177.98 (15) | 4.90 (10) | 2.32 (12) | 3.82 (6) | RUTFET |
| (VIII* | 2-naphthol | 4-OH-3-MeO-C6H4 | 178.73 (14) | 5.78 (10) | 15.06 (7) | 13.14 (5) | POMNIQ |
| 177.74 (15) | 6.65 (9) | 12.05 (11) | 18.46 (6) | ||||
| (IX)* | 2-naphthol | pyren-1-yl | −173 (1) | 2.6 (8) | 4.4 (7) | 6.9 (4) | APACEB |
| 173 (1) | 5.3 (7) | 4.7 (7) | 7.9 (4) |
* Two independent molecules in the asymmetric unit. References: (a) This work; (b) Patil & Das (2017 ▸); (c) Akkurt et al. (2015 ▸); (d) Arsenyev et al. (2016 ▸); (e) Ghosh, Adhikari et al. (2016 ▸); (f) Ghosh, Ta et al. (2016 ▸); (g) Ghosh, Ta et al. (2016 ▸); (h) Kumari et al. (2014 ▸); (i) Ghosh, Ganguly et al. (2016 ▸)
Experimental details
| Crystal data | |
| Chemical formula | C14H10Cl2N2O |
|
| 293.14 |
| Crystal system, space group | Monoclinic, |
| Temperature (K) | 296 |
|
| 8.5614 (8), 15.6055 (12), 10.0527 (9) |
| β (°) | 95.031 (3) |
|
| 1337.9 (2) |
|
| 4 |
| Radiation type | Mo |
| μ (mm−1) | 0.48 |
| Crystal size (mm) | 0.35 × 0.30 × 0.30 |
| Data collection | |
| Diffractometer | Bruker Kappa APEXII CCD |
| Absorption correction | Multi-scan ( |
|
| 0.846, 0.867 |
| No. of measured, independent and observed [ | 10171, 3185, 2244 |
|
| 0.023 |
| (sin θ/λ)max (Å−1) | 0.666 |
| Refinement | |
|
| 0.044, 0.138, 1.05 |
| No. of reflections | 3185 |
| No. of parameters | 175 |
| H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
| Δρmax, Δρmin (e Å−3) | 0.37, −0.28 |
Computer programs: APEX2 and SAINT (Bruker, 2004 ▸), SIR92 (Altomare et al., 1994 ▸), SHELXL2014 (Sheldrick, 2015 ▸), ORTEP-3 for Windows (Farrugia, 2012 ▸), DIAMOND (Brandenburg, 2006 ▸) and publCIF (Westrip, 2010 ▸).
| C14H10Cl2N2O | |
| Monoclinic, | Mo |
| Cell parameters from 4447 reflections | |
| θ = 4.8–56.3° | |
| µ = 0.48 mm−1 | |
| β = 95.031 (3)° | |
| Block, light-yellow | |
| 0.35 × 0.30 × 0.30 mm |
| Bruker Kappa APEXII CCD diffractometer | 2244 reflections with |
| Radiation source: X-ray tube | |
| ω and φ scan | θmax = 28.3°, θmin = 2.6° |
| Absorption correction: multi-scan (SADABS; Bruker, 2004) | |
| 10171 measured reflections | |
| 3185 independent reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: mixed | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 3185 reflections | (Δ/σ)max < 0.001 |
| 175 parameters | Δρmax = 0.37 e Å−3 |
| 0 restraints | Δρmin = −0.28 e Å−3 |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Cl1 | 0.37913 (8) | −0.06610 (4) | 0.23254 (7) | 0.0669 (2) | |
| Cl2 | 0.90894 (8) | −0.10632 (4) | 0.57108 (7) | 0.0646 (2) | |
| O1 | 0.8423 (2) | 0.25607 (11) | 0.52671 (19) | 0.0636 (5) | |
| H3O | 0.808 (4) | 0.206 (2) | 0.501 (3) | 0.095* | |
| N1 | 0.66249 (19) | 0.14415 (10) | 0.39038 (17) | 0.0395 (4) | |
| N2 | 0.6061 (2) | 0.06313 (10) | 0.34827 (19) | 0.0462 (5) | |
| C1 | 0.7508 (2) | 0.31651 (12) | 0.4623 (2) | 0.0406 (5) | |
| C2 | 0.6261 (2) | 0.29483 (12) | 0.36883 (19) | 0.0343 (4) | |
| C3 | 0.5366 (3) | 0.36160 (13) | 0.3082 (2) | 0.0449 (5) | |
| H3 | 0.4534 | 0.3486 | 0.2457 | 0.054* | |
| C4 | 0.5688 (3) | 0.44563 (15) | 0.3390 (2) | 0.0555 (6) | |
| H4 | 0.5073 | 0.4890 | 0.2984 | 0.067* | |
| C5 | 0.6932 (3) | 0.46555 (14) | 0.4305 (3) | 0.0590 (7) | |
| H5 | 0.7160 | 0.5226 | 0.4505 | 0.071* | |
| C6 | 0.7839 (3) | 0.40175 (14) | 0.4924 (3) | 0.0535 (6) | |
| H6 | 0.8671 | 0.4158 | 0.5543 | 0.064* | |
| C7 | 0.5859 (2) | 0.20707 (12) | 0.3350 (2) | 0.0378 (4) | |
| H7 | 0.5026 | 0.1960 | 0.2716 | 0.045* | |
| C8 | 0.6741 (2) | 0.00413 (12) | 0.4161 (2) | 0.0397 (5) | |
| H8 | 0.7496 | 0.0206 | 0.4834 | 0.048* | |
| C9 | 0.6461 (2) | −0.08822 (11) | 0.39956 (18) | 0.0333 (4) | |
| C10 | 0.5215 (2) | −0.12658 (13) | 0.3210 (2) | 0.0389 (5) | |
| C11 | 0.5039 (3) | −0.21481 (14) | 0.3119 (2) | 0.0453 (5) | |
| H11 | 0.4196 | −0.2381 | 0.2594 | 0.054* | |
| C12 | 0.6111 (3) | −0.26778 (13) | 0.3805 (2) | 0.0487 (5) | |
| H12 | 0.5998 | −0.3269 | 0.3734 | 0.058* | |
| C13 | 0.7354 (3) | −0.23366 (13) | 0.4599 (2) | 0.0459 (5) | |
| H13 | 0.8080 | −0.2694 | 0.5064 | 0.055* | |
| C14 | 0.7504 (2) | −0.14562 (12) | 0.4692 (2) | 0.0387 (5) |
| Cl1 | 0.0580 (4) | 0.0514 (4) | 0.0850 (5) | −0.0036 (3) | −0.0299 (3) | 0.0108 (3) |
| Cl2 | 0.0631 (4) | 0.0443 (3) | 0.0800 (5) | 0.0068 (3) | −0.0304 (3) | −0.0017 (3) |
| O1 | 0.0630 (11) | 0.0375 (8) | 0.0835 (13) | 0.0107 (8) | −0.0322 (9) | −0.0042 (8) |
| N1 | 0.0445 (9) | 0.0262 (8) | 0.0470 (10) | 0.0012 (7) | −0.0009 (8) | 0.0012 (7) |
| N2 | 0.0586 (11) | 0.0274 (8) | 0.0503 (11) | −0.0011 (8) | −0.0076 (9) | −0.0015 (7) |
| C1 | 0.0429 (11) | 0.0321 (10) | 0.0461 (12) | 0.0060 (8) | 0.0000 (9) | −0.0012 (8) |
| C2 | 0.0393 (10) | 0.0284 (9) | 0.0356 (10) | 0.0048 (8) | 0.0047 (8) | 0.0015 (8) |
| C3 | 0.0543 (12) | 0.0381 (11) | 0.0414 (11) | 0.0098 (9) | −0.0003 (10) | 0.0031 (9) |
| C4 | 0.0782 (17) | 0.0357 (11) | 0.0520 (14) | 0.0177 (11) | 0.0023 (12) | 0.0066 (10) |
| C5 | 0.0847 (18) | 0.0287 (10) | 0.0629 (15) | 0.0041 (11) | 0.0026 (13) | −0.0043 (10) |
| C6 | 0.0620 (15) | 0.0364 (11) | 0.0598 (14) | −0.0004 (10) | −0.0085 (12) | −0.0088 (10) |
| C7 | 0.0413 (10) | 0.0338 (10) | 0.0373 (10) | 0.0012 (8) | −0.0020 (8) | 0.0001 (8) |
| C8 | 0.0389 (10) | 0.0315 (9) | 0.0478 (12) | −0.0012 (8) | −0.0020 (9) | 0.0005 (9) |
| C9 | 0.0376 (10) | 0.0292 (9) | 0.0333 (10) | 0.0001 (7) | 0.0051 (8) | 0.0013 (7) |
| C10 | 0.0419 (11) | 0.0359 (10) | 0.0381 (10) | −0.0009 (8) | −0.0005 (8) | 0.0033 (8) |
| C11 | 0.0551 (13) | 0.0380 (11) | 0.0424 (12) | −0.0082 (9) | 0.0017 (10) | −0.0042 (9) |
| C12 | 0.0688 (15) | 0.0285 (10) | 0.0496 (13) | −0.0054 (10) | 0.0106 (11) | −0.0019 (9) |
| C13 | 0.0608 (14) | 0.0309 (10) | 0.0459 (12) | 0.0078 (9) | 0.0041 (10) | 0.0041 (9) |
| C14 | 0.0444 (11) | 0.0331 (10) | 0.0382 (11) | 0.0016 (8) | 0.0021 (9) | 0.0006 (8) |
| Cl1—C10 | 1.725 (2) | C5—C6 | 1.377 (3) |
| Cl2—C14 | 1.739 (2) | C5—H5 | 0.9300 |
| O1—C1 | 1.354 (2) | C6—H6 | 0.9300 |
| O1—H3O | 0.87 (3) | C7—H7 | 0.9300 |
| N1—C7 | 1.281 (2) | C8—C9 | 1.468 (3) |
| N1—N2 | 1.405 (2) | C8—H8 | 0.9300 |
| N2—C8 | 1.258 (3) | C9—C14 | 1.407 (3) |
| C1—C6 | 1.388 (3) | C9—C10 | 1.405 (3) |
| C1—C2 | 1.401 (3) | C10—C11 | 1.387 (3) |
| C2—C3 | 1.401 (3) | C11—C12 | 1.375 (3) |
| C2—C7 | 1.445 (3) | C11—H11 | 0.9300 |
| C3—C4 | 1.370 (3) | C12—C13 | 1.379 (3) |
| C3—H3 | 0.9300 | C12—H12 | 0.9300 |
| C4—C5 | 1.380 (4) | C13—C14 | 1.382 (3) |
| C4—H4 | 0.9300 | C13—H13 | 0.9300 |
| C1—O1—H3O | 109 (2) | C2—C7—H7 | 119.3 |
| C7—N1—N2 | 114.17 (16) | N2—C8—C9 | 126.41 (18) |
| C8—N2—N1 | 111.38 (17) | N2—C8—H8 | 116.8 |
| O1—C1—C6 | 117.72 (19) | C9—C8—H8 | 116.8 |
| O1—C1—C2 | 121.84 (17) | C14—C9—C10 | 115.23 (17) |
| C6—C1—C2 | 120.44 (19) | C14—C9—C8 | 118.56 (17) |
| C3—C2—C1 | 117.91 (18) | C10—C9—C8 | 126.20 (17) |
| C3—C2—C7 | 119.52 (18) | C11—C10—C9 | 122.19 (18) |
| C1—C2—C7 | 122.57 (17) | C11—C10—Cl1 | 116.18 (16) |
| C4—C3—C2 | 121.5 (2) | C9—C10—Cl1 | 121.61 (15) |
| C4—C3—H3 | 119.3 | C12—C11—C10 | 120.0 (2) |
| C2—C3—H3 | 119.3 | C12—C11—H11 | 120.0 |
| C3—C4—C5 | 119.6 (2) | C10—C11—H11 | 120.0 |
| C3—C4—H4 | 120.2 | C13—C12—C11 | 120.35 (18) |
| C5—C4—H4 | 120.2 | C13—C12—H12 | 119.8 |
| C6—C5—C4 | 120.7 (2) | C11—C12—H12 | 119.8 |
| C6—C5—H5 | 119.7 | C12—C13—C14 | 119.0 (2) |
| C4—C5—H5 | 119.7 | C12—C13—H13 | 120.5 |
| C5—C6—C1 | 119.9 (2) | C14—C13—H13 | 120.5 |
| C5—C6—H6 | 120.1 | C13—C14—C9 | 123.19 (19) |
| C1—C6—H6 | 120.1 | C13—C14—Cl2 | 117.00 (16) |
| N1—C7—C2 | 121.47 (18) | C9—C14—Cl2 | 119.80 (14) |
| N1—C7—H7 | 119.3 | ||
| C7—N1—N2—C8 | −172.7 (2) | N2—C8—C9—C14 | 169.6 (2) |
| O1—C1—C2—C3 | 179.3 (2) | N2—C8—C9—C10 | −11.4 (4) |
| C6—C1—C2—C3 | −0.3 (3) | C14—C9—C10—C11 | −0.6 (3) |
| O1—C1—C2—C7 | 0.3 (3) | C8—C9—C10—C11 | −179.6 (2) |
| C6—C1—C2—C7 | −179.4 (2) | C14—C9—C10—Cl1 | 178.08 (15) |
| C1—C2—C3—C4 | −0.2 (3) | C8—C9—C10—Cl1 | −0.9 (3) |
| C7—C2—C3—C4 | 178.9 (2) | C9—C10—C11—C12 | −0.4 (3) |
| C2—C3—C4—C5 | 0.8 (4) | Cl1—C10—C11—C12 | −179.23 (18) |
| C3—C4—C5—C6 | −0.9 (4) | C10—C11—C12—C13 | 0.8 (3) |
| C4—C5—C6—C1 | 0.3 (4) | C11—C12—C13—C14 | 0.0 (3) |
| O1—C1—C6—C5 | −179.4 (2) | C12—C13—C14—C9 | −1.1 (3) |
| C2—C1—C6—C5 | 0.3 (4) | C12—C13—C14—Cl2 | 179.81 (17) |
| N2—N1—C7—C2 | 178.69 (18) | C10—C9—C14—C13 | 1.4 (3) |
| C3—C2—C7—N1 | −178.4 (2) | C8—C9—C14—C13 | −179.5 (2) |
| C1—C2—C7—N1 | 0.6 (3) | C10—C9—C14—Cl2 | −179.53 (15) |
| N1—N2—C8—C9 | −179.54 (19) | C8—C9—C14—Cl2 | −0.5 (3) |
| H··· | ||||
| O1—H1O···N1 | 0.87 (3) | 1.87 (3) | 2.632 (2) | 147 (3) |