| Literature DB >> 31636716 |
Parnian Jamshidi1, Saba Hasanzadeh1, Azin Tahvildari1, Yeganeh Farsi1, Mahta Arbabi1, João Felipe Mota2, Leonardo A Sechi3, Mohammad Javad Nasiri4.
Abstract
INTRODUCTION: Type 1 diabetes (T1D) is the second most common autoimmune disease among children. There is evidence suggesting that dysbiosis of some gut colonizing bacteria are associated with the pathogenesis of T1D. However, these studies are still controversial and a systematic review was conducted to evaluate the association between gut microbiota and T1D.Entities:
Keywords: Dysbiosis; Microbiota; Type 1 diabetes
Year: 2019 PMID: 31636716 PMCID: PMC6791003 DOI: 10.1186/s13099-019-0332-7
Source DB: PubMed Journal: Gut Pathog ISSN: 1757-4749 Impact factor: 4.181
Fig. 1Flow chart of study selection for inclusion in the systematic review
Characteristics of included studies
| Authors | Year | Country | Type of study | Study population (control and case) | Age (mean) | Microbiota analysis technique |
|---|---|---|---|---|---|---|
| Rozanova et al. [ | 2002 | Russia | Cohort | 38 T1D | 3 years | Not mentioned |
| Brown et al. [ | 2011 | Finland | Case–control | 8 T1D | Children | DNA sequencing |
| Giongo et al. [ | 2011 | USA | Case–control | Control: 4, case: 4 | 5 months | 16s rRNA sequencing |
| Murri et al. [ | 2013 | Spain | Case–control | Control: 16, case: 16 | 7 years | Real time quantitative PCR |
| Richardson et al. [ | 2014 | Finland | Cohort | Control: 47, case: 29 | 2 years | 16s rRNA sequencing |
| de Goffau et al. [ | 2014 | Netherlands | Case–control | Control: 27, case: 28 | 3 years | Microarray analysis |
| Endesfelder et al. [ | 2014 | Germany | Cohort | Control: 22, case: 22 | 19.5 months | 16s rRNA sequencing |
| Mejia et al. [ | 2014 | Mexico | Case–control | Control: 8, case: 21 | 12.5 years | 16s rRNA pyrosequencing |
| Soyucen et al. [ | 2014 | Turkey | Case–control | Control: 35, case: 35 | 10 years | Quantitative cultures on selective and non-selective media |
| Kostic et al. [ | 2015 | Finland | Cohort | Control: 22, case: 11b | Infants | 16s rRNA sequencing |
| Alkanani et al. [ | 2015 | USA | Cross-sectional | Control: 23, casea: 88 | 11 years | 16s rRNA sequencing |
| Cui et al. [ | 2016 | China | Case–control | Control: 15, case: 15 | 11 years | 16s rRNA sequencing |
| Maffeis et al. [ | 2016 | Italy | Case–control | Control: 10, case: 10 | 11 years | Semi-quantitative PCR |
| Stewart et al. [ | 2017 | UK | Case–control | Control: 10, case: 10 | 27 years | 16s rRNA sequencing |
| Pinto et al. [ | 2017 | Portugal | Cohort | Control: 3, case: 3 | 9 years | Real time quantitative PCR |
| Pellegrini et al. [ | 2017 | Italy | Case–control | Control: 35c, case: 19 | 36 years | Real time quantitative PCR |
| Traversi et al. [ | 2017 | Italy | Case–control | Control: 13, case: 13 | 8 years | Real time quantitative PCR |
| Gao et al. [ | 2018 | France | Cohort | 33 genetically predisposed to T1D | 1.5 years | 16s rRNA sequencing |
| Vatanen et al. [ | 2018 | USA | Nested case–control | Control: 415, case: 368d | 3 month | 16s rRNA sequencing |
| Stewart et al. [ | 2018 | USA | Nested case–control | 903 children | 24.5 month | 16s rRNA sequencing |
| Huang et al. [ | 2018 | China | Case–control | Control: 10, case: 12 | 23.5 | 16s rRNA sequencing |
| Gavin et al. [ | 2018 | Australia | Cross-sectional | Control: 22, case: 69e | 10.8 | Proteomics and 16S rRNA sequencing |
| Leiva-Gea et al. [ | 2018 | Spain | Case–control | Control: 13, case: 15 T1D | 12.6 | 16S rRNA pyrosequencing |
| Higuchi et al. [ | 2018 | Brazil | Case–control | Control: 28, case: 20 | 23.1 | 16s rRNA sequencing |
| Salamon et al. [ | 2018 | Poland | Case–control | Control: 23, case: 22 | 42.5 | 16s rRNA sequencing |
| Cinek et al. [ | 2018 | Czech federation | Case–control | Control: 103, case: 73f | 11.8 | 16s rRNA sequencing |
a35 new-onset patients; 21 seropositive; 32 seronegative FDRs (first degree relatives)
bSeroconverters
c16 healthy control; 19 gut inflammatory disease as the second control
d267 seroconverters and 101 diagnosed with T1D
e23 recent onset type 1 diabetes; 17 islet autoantibody–positive subjects; 29 low-risk autoantibody-negative subjects
fAzerbaijan: 19, Jordan: 20, Nigeria: 14, Sudan: 20
Association of gut microbiota and type 1 diabetes
| Authors | Year | Country | Type of study | Association between diabetes and microbiome |
|---|---|---|---|---|
| Rozanova et al. [ | 2002 | Russia | Cohort | Yes |
| Brown et al. [ | 2011 | Finland | Case–control | May |
| Giongo et al. [ | 2011 | USA | Case–control | Yes |
| Murri et al. [ | 2013 | Spain | Case–control | Yes |
| Richardson et al. [ | 2014 | Finland | Cohort | Yes |
| de Goffau et al. [ | 2014 | Netherlands | Case–control | Yes |
| Endesfelder et al. [ | 2014 | Germany | Cohort | Yes |
| Mejia et al. [ | 2014 | Mexico | Case–control | Yes |
| Soyucen et al. [ | 2014 | Turkey | Case–control | Yes |
| Kostic et al. [ | 2015 | Finland | Cohort | Yes |
| Alkanani et al. [ | 2015 | USA | Cross-sectional | Yes |
| Cui et al. [ | 2016 | China | Case–control | Yes |
| Maffeis et al. [ | 2016 | Italy | Case–control | Yes |
| Stewart et al. [ | 2017 | UK | Case–control | Yes |
| Pinto et al. [ | 2017 | Portugal | Cohort | Yes |
| Pellegrini et al. [ | 2017 | Italy | Case–control | Yes |
| Traversi et al. [ | 2017 | Italy | Case–control | Not mentioned |
| Gao et al. [ | 2018 | France | Cohort | Yes |
| Vatanen et al. [ | 2018 | USA | Nested case–control | Yes |
| Stewart et al. [ | 2018 | USA | Nested case–control | Yes |
| Huang et al. [ | 2018 | China | Case–control | Yes |
| Gavin et al. [ | 2018 | Australia | Cross-sectional | Yes |
| Leiva-Gea et al. [ | 2018 | Spain | Case–control | Yes |
| Higuchi et al. [ | 2018 | Brazil | Case–control | Yes |
| Salamon et al. [ | 2018 | Poland | Case–control | Yes |
| Cinek et al. [ | 2018 | Czech federation | Case–control | Yes |
Intestinal microbiota modifications
| Authors | Intestinal microbiota modifications |
|---|---|
| Rozanova et al. [ | |
| Increased | Lactose-negative Enterobacteriaceae, |
| Decreased | |
| Brown et al. [ | |
| Increased | |
| Decreased | |
| Giongo et al. [ | |
| Increased | Bacteroidetes |
| Decreased | Firmicutes |
| Murri et al. [ | |
| Increased | |
| Decreased | |
| Richardson et al. [ | |
| Increased | |
| Decreased | – |
| de Goffau et al. [ | |
| Increased | |
| Decreased | – |
| de Goffau et al. [ | |
| Increased | Non butyrate producing species of Clostridium cluster |
| Decreased | – |
| Endesfelder et al. [ | |
| Increased | |
| Decreased | – |
| Endesfelder et al. [ | |
| Increased | |
| Decreased | |
| Mejia et al. [ | |
| Increased | |
| Decreased | |
| Soyucen et al. [ | |
| Increased | Enterobacteriaceae, |
| Decreased | |
| Kostic et al. [ | |
| Increased | – |
| Decreased | |
| Alkanani et al. [ | |
| Increased | |
| Decreased | Prevotellaceae |
| Cui et al. [ | |
| Increased | |
| Decreased | |
| Maffeis et al. [ | |
| Increased | |
| Decreased | – |
| Stewart et al. [ | |
| Increased | |
| Decreased | – |
| Pinto et al. [ | |
| Increased | |
| Decreased | |
| Pellegrini et al. [ | |
| Increased | Firmicutes |
| Decreased | |
| Traversi et al. [ | |
| Increased | |
| Decreased | |
| Gao et al. [ | This study emphasizes on interactions between gut microbiota rather than quantitative changes |
| Vatanen et al. [ | |
| Increased | |
| Decreased | |
| Stewart et al. [ | |
| Increased | – |
| Decreased | |
| Huang et al. [ | |
| Increased | Bacteroidetes/Firmicutes ratio, Porphyromonadaceae |
| Decreased | |
| Gavin et al. [ | |
| Increased | |
| Decreased | |
| Leiva-Gea et al. [ | |
| Increased | |
| Decreased | |
| Higuchi et al. [ | |
| Increased | |
| Decreased | – |
| Salamon et al. [ | |
| Increased | |
| Decreased | |
| Cinek et al. [ | |
| Increased |
|
| Decreased | |
aIn cases with < 2.9 years
bIn cases with > 2.9 years
cEigenvector centrality (EC) at age 0.5 years
dEC at age 2 years