Literature DB >> 31630085

Decentralized distribution-sampled classification models with application to brain imaging.

Noah Lewis1, Harshvardhan Gazula2, Sergey M Plis2, Vince D Calhoun3.   

Abstract

BACKGROUND: In this age of big data, certain models require very large data stores in order to be informative and accurate. In many cases however, the data are stored in separate locations requiring data transfer between local sites which can cause various practical hurdles, such as privacy concerns or heavy network load. This is especially true for medical imaging data, which can be constrained due to the health insurance portability and accountability act (HIPAA) which provides security protocols for medical data. Medical imaging datasets can also contain many thousands or millions of features, requiring heavy network load. NEW
METHOD: Our research expands upon current decentralized classification research by implementing a new singleshot method for both neural networks and support vector machines. Our approach is to estimate the statistical distribution of the data at each local site and pass this information to the other local sites where each site resamples from the individual distributions and trains a model on both locally available data and the resampled data. The model for each local site produces its own accuracy value which are then averaged together to produce the global average accuracy.
RESULTS: We show applications of our approach to handwritten digit classification as well as to multi-subject classification of brain imaging data collected from patients with schizophrenia and healthy controls. Overall, the results showed comparable classification accuracy to the centralized model with lower network load than multishot methods. COMPARISON WITH EXISTING
METHODS: Many decentralized classifiers are multishot, requiring heavy network traffic. Our model attempts to alleviate this load while preserving prediction accuracy.
CONCLUSIONS: We show that our proposed approach performs comparably to a centralized approach while minimizing network traffic compared to multishot methods.
Copyright © 2019. Published by Elsevier B.V.

Entities:  

Keywords:  Decentralized learning; Deep learning; Neuroimaging; Statistical inference

Mesh:

Year:  2019        PMID: 31630085      PMCID: PMC7246039          DOI: 10.1016/j.jneumeth.2019.108418

Source DB:  PubMed          Journal:  J Neurosci Methods        ISSN: 0165-0270            Impact factor:   2.390


  10 in total

1.  Bilateral hippocampal dysfunction in schizophrenia.

Authors:  Faith M Hanlon; Jon M Houck; Clinton J Pyeatt; S Laura Lundy; Matthew J Euler; Michael P Weisend; Robert J Thoma; Juan R Bustillo; Gregory A Miller; Claudia D Tesche
Journal:  Neuroimage       Date:  2011-07-07       Impact factor: 6.556

2.  Working memory and DLPFC inefficiency in schizophrenia: the FBIRN study.

Authors:  S G Potkin; J A Turner; G G Brown; G McCarthy; D N Greve; G H Glover; D S Manoach; A Belger; M Diaz; C G Wible; J M Ford; D H Mathalon; R Gollub; J Lauriello; D O'Leary; T G M van Erp; A W Toga; A Preda; K O Lim
Journal:  Schizophr Bull       Date:  2008-11-27       Impact factor: 9.306

Review 3.  The ENIGMA Consortium: large-scale collaborative analyses of neuroimaging and genetic data.

Authors:  Paul M Thompson; Jason L Stein; Sarah E Medland; Derrek P Hibar; Alejandro Arias Vasquez; Miguel E Renteria; Roberto Toro; Neda Jahanshad; Gunter Schumann; Barbara Franke; Margaret J Wright; Nicholas G Martin; Ingrid Agartz; Martin Alda; Saud Alhusaini; Laura Almasy; Jorge Almeida; Kathryn Alpert; Nancy C Andreasen; Ole A Andreassen; Liana G Apostolova; Katja Appel; Nicola J Armstrong; Benjamin Aribisala; Mark E Bastin; Michael Bauer; Carrie E Bearden; Orjan Bergmann; Elisabeth B Binder; John Blangero; Henry J Bockholt; Erlend Bøen; Catherine Bois; Dorret I Boomsma; Tom Booth; Ian J Bowman; Janita Bralten; Rachel M Brouwer; Han G Brunner; David G Brohawn; Randy L Buckner; Jan Buitelaar; Kazima Bulayeva; Juan R Bustillo; Vince D Calhoun; Dara M Cannon; Rita M Cantor; Melanie A Carless; Xavier Caseras; Gianpiero L Cavalleri; M Mallar Chakravarty; Kiki D Chang; Christopher R K Ching; Andrea Christoforou; Sven Cichon; Vincent P Clark; Patricia Conrod; Giovanni Coppola; Benedicto Crespo-Facorro; Joanne E Curran; Michael Czisch; Ian J Deary; Eco J C de Geus; Anouk den Braber; Giuseppe Delvecchio; Chantal Depondt; Lieuwe de Haan; Greig I de Zubicaray; Danai Dima; Rali Dimitrova; Srdjan Djurovic; Hongwei Dong; Gary Donohoe; Ravindranath Duggirala; Thomas D Dyer; Stefan Ehrlich; Carl Johan Ekman; Torbjørn Elvsåshagen; Louise Emsell; Susanne Erk; Thomas Espeseth; Jesen Fagerness; Scott Fears; Iryna Fedko; Guillén Fernández; Simon E Fisher; Tatiana Foroud; Peter T Fox; Clyde Francks; Sophia Frangou; Eva Maria Frey; Thomas Frodl; Vincent Frouin; Hugh Garavan; Sudheer Giddaluru; David C Glahn; Beata Godlewska; Rita Z Goldstein; Randy L Gollub; Hans J Grabe; Oliver Grimm; Oliver Gruber; Tulio Guadalupe; Raquel E Gur; Ruben C Gur; Harald H H Göring; Saskia Hagenaars; Tomas Hajek; Geoffrey B Hall; Jeremy Hall; John Hardy; Catharina A Hartman; Johanna Hass; Sean N Hatton; Unn K Haukvik; Katrin Hegenscheid; Andreas Heinz; Ian B Hickie; Beng-Choon Ho; David Hoehn; Pieter J Hoekstra; Marisa Hollinshead; Avram J Holmes; Georg Homuth; Martine Hoogman; L Elliot Hong; Norbert Hosten; Jouke-Jan Hottenga; Hilleke E Hulshoff Pol; Kristy S Hwang; Clifford R Jack; Mark Jenkinson; Caroline Johnston; Erik G Jönsson; René S Kahn; Dalia Kasperaviciute; Sinead Kelly; Sungeun Kim; Peter Kochunov; Laura Koenders; Bernd Krämer; John B J Kwok; Jim Lagopoulos; Gonzalo Laje; Mikael Landen; Bennett A Landman; John Lauriello; Stephen M Lawrie; Phil H Lee; Stephanie Le Hellard; Herve Lemaître; Cassandra D Leonardo; Chiang-Shan Li; Benny Liberg; David C Liewald; Xinmin Liu; Lorna M Lopez; Eva Loth; Anbarasu Lourdusamy; Michelle Luciano; Fabio Macciardi; Marise W J Machielsen; Glenda M Macqueen; Ulrik F Malt; René Mandl; Dara S Manoach; Jean-Luc Martinot; Mar Matarin; Karen A Mather; Manuel Mattheisen; Morten Mattingsdal; Andreas Meyer-Lindenberg; Colm McDonald; Andrew M McIntosh; Francis J McMahon; Katie L McMahon; Eva Meisenzahl; Ingrid Melle; Yuri Milaneschi; Sebastian Mohnke; Grant W Montgomery; Derek W Morris; Eric K Moses; Bryon A Mueller; Susana Muñoz Maniega; Thomas W Mühleisen; Bertram Müller-Myhsok; Benson Mwangi; Matthias Nauck; Kwangsik Nho; Thomas E Nichols; Lars-Göran Nilsson; Allison C Nugent; Lars Nyberg; Rene L Olvera; Jaap Oosterlaan; Roel A Ophoff; Massimo Pandolfo; Melina Papalampropoulou-Tsiridou; Martina Papmeyer; Tomas Paus; Zdenka Pausova; Godfrey D Pearlson; Brenda W Penninx; Charles P Peterson; Andrea Pfennig; Mary Phillips; G Bruce Pike; Jean-Baptiste Poline; Steven G Potkin; Benno Pütz; Adaikalavan Ramasamy; Jerod Rasmussen; Marcella Rietschel; Mark Rijpkema; Shannon L Risacher; Joshua L Roffman; Roberto Roiz-Santiañez; Nina Romanczuk-Seiferth; Emma J Rose; Natalie A Royle; Dan Rujescu; Mina Ryten; Perminder S Sachdev; Alireza Salami; Theodore D Satterthwaite; Jonathan Savitz; Andrew J Saykin; Cathy Scanlon; Lianne Schmaal; Hugo G Schnack; Andrew J Schork; S Charles Schulz; Remmelt Schür; Larry Seidman; Li Shen; Jody M Shoemaker; Andrew Simmons; Sanjay M Sisodiya; Colin Smith; Jordan W Smoller; Jair C Soares; Scott R Sponheim; Emma Sprooten; John M Starr; Vidar M Steen; Stephen Strakowski; Lachlan Strike; Jessika Sussmann; Philipp G Sämann; Alexander Teumer; Arthur W Toga; Diana Tordesillas-Gutierrez; Daniah Trabzuni; Sarah Trost; Jessica Turner; Martijn Van den Heuvel; Nic J van der Wee; Kristel van Eijk; Theo G M van Erp; Neeltje E M van Haren; Dennis van 't Ent; Marie-Jose van Tol; Maria C Valdés Hernández; Dick J Veltman; Amelia Versace; Henry Völzke; Robert Walker; Henrik Walter; Lei Wang; Joanna M Wardlaw; Michael E Weale; Michael W Weiner; Wei Wen; Lars T Westlye; Heather C Whalley; Christopher D Whelan; Tonya White; Anderson M Winkler; Katharina Wittfeld; Girma Woldehawariat; Christiane Wolf; David Zilles; Marcel P Zwiers; Anbupalam Thalamuthu; Peter R Schofield; Nelson B Freimer; Natalia S Lawrence; Wayne Drevets
Journal:  Brain Imaging Behav       Date:  2014-06       Impact factor: 3.978

4.  Multivariate neuroanatomical classification of cognitive subtypes in schizophrenia: a support vector machine learning approach.

Authors:  Ian C Gould; Alana M Shepherd; Kristin R Laurens; Murray J Cairns; Vaughan J Carr; Melissa J Green
Journal:  Neuroimage Clin       Date:  2014-09-18       Impact factor: 4.881

5.  COINSTAC: Decentralizing the future of brain imaging analysis.

Authors:  Jing Ming; Eric Verner; Anand Sarwate; Ross Kelly; Cory Reed; Torran Kahleck; Rogers Silva; Sandeep Panta; Jessica Turner; Sergey Plis; Vince Calhoun
Journal:  F1000Res       Date:  2017-08-18

6.  Multimodal Neuroimaging in Schizophrenia: Description and Dissemination.

Authors:  C J Aine; H J Bockholt; J R Bustillo; J M Cañive; A Caprihan; C Gasparovic; F M Hanlon; J M Houck; R E Jung; J Lauriello; J Liu; A R Mayer; N I Perrone-Bizzozero; S Posse; J M Stephen; J A Turner; V P Clark; Vince D Calhoun
Journal:  Neuroinformatics       Date:  2017-10

7.  Decentralized Analysis of Brain Imaging Data: Voxel-Based Morphometry and Dynamic Functional Network Connectivity.

Authors:  Harshvardhan Gazula; Bradley T Baker; Eswar Damaraju; Sergey M Plis; Sandeep R Panta; Rogers F Silva; Vince D Calhoun
Journal:  Front Neuroinform       Date:  2018-08-27       Impact factor: 3.739

8.  ViPAR: a software platform for the Virtual Pooling and Analysis of Research Data.

Authors:  Kim W Carter; Richard W Francis; K W Carter; R W Francis; M Bresnahan; M Gissler; T K Grønborg; R Gross; N Gunnes; G Hammond; M Hornig; C M Hultman; J Huttunen; A Langridge; H Leonard; S Newman; E T Parner; G Petersson; A Reichenberg; S Sandin; D E Schendel; L Schalkwyk; A Sourander; C Steadman; C Stoltenberg; A Suominen; P Surén; E Susser; A Sylvester Vethanayagam; Z Yusof
Journal:  Int J Epidemiol       Date:  2015-10-08       Impact factor: 7.196

9.  COINSTAC: A Privacy Enabled Model and Prototype for Leveraging and Processing Decentralized Brain Imaging Data.

Authors:  Sergey M Plis; Anand D Sarwate; Dylan Wood; Christopher Dieringer; Drew Landis; Cory Reed; Sandeep R Panta; Jessica A Turner; Jody M Shoemaker; Kim W Carter; Paul Thompson; Kent Hutchison; Vince D Calhoun
Journal:  Front Neurosci       Date:  2016-08-19       Impact factor: 4.677

10.  The MCIC collection: a shared repository of multi-modal, multi-site brain image data from a clinical investigation of schizophrenia.

Authors:  Randy L Gollub; Jody M Shoemaker; Margaret D King; Tonya White; Stefan Ehrlich; Scott R Sponheim; Vincent P Clark; Jessica A Turner; Bryon A Mueller; Vince Magnotta; Daniel O'Leary; Beng C Ho; Stefan Brauns; Dara S Manoach; Larry Seidman; Juan R Bustillo; John Lauriello; Jeremy Bockholt; Kelvin O Lim; Bruce R Rosen; S Charles Schulz; Vince D Calhoun; Nancy C Andreasen
Journal:  Neuroinformatics       Date:  2013-07
  10 in total
  3 in total

Review 1.  Federated Analysis of Neuroimaging Data: A Review of the Field.

Authors:  Kelly Rootes-Murdy; Harshvardhan Gazula; Eric Verner; Ross Kelly; Thomas DeRamus; Sergey Plis; Anand Sarwate; Jessica Turner; Vince Calhoun
Journal:  Neuroinformatics       Date:  2021-11-22

2.  NeuroCrypt: Machine Learning Over Encrypted Distributed Neuroimaging Data.

Authors:  Nipuna Senanayake; Robert Podschwadt; Daniel Takabi; Vince D Calhoun; Sergey M Plis
Journal:  Neuroinformatics       Date:  2021-05-04

3.  Deep learning methods and applications in neuroimaging.

Authors:  Jing Sui; MingXia Liu; Jong-Hwan Lee; Jun Zhang; Vince Calhoun
Journal:  J Neurosci Methods       Date:  2020-04-06       Impact factor: 2.987

  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.