Literature DB >> 23760817

The MCIC collection: a shared repository of multi-modal, multi-site brain image data from a clinical investigation of schizophrenia.

Randy L Gollub1, Jody M Shoemaker, Margaret D King, Tonya White, Stefan Ehrlich, Scott R Sponheim, Vincent P Clark, Jessica A Turner, Bryon A Mueller, Vince Magnotta, Daniel O'Leary, Beng C Ho, Stefan Brauns, Dara S Manoach, Larry Seidman, Juan R Bustillo, John Lauriello, Jeremy Bockholt, Kelvin O Lim, Bruce R Rosen, S Charles Schulz, Vince D Calhoun, Nancy C Andreasen.   

Abstract

Expertly collected, well-curated data sets consisting of comprehensive clinical characterization and raw structural, functional and diffusion-weighted DICOM images in schizophrenia patients and sex and age-matched controls are now accessible to the scientific community through an on-line data repository (coins.mrn.org). The Mental Illness and Neuroscience Discovery Institute, now the Mind Research Network (MRN, http://www.mrn.org/ ), comprised of investigators at the University of New Mexico, the University of Minnesota, Massachusetts General Hospital, and the University of Iowa, conducted a cross-sectional study to identify quantitative neuroimaging biomarkers of schizophrenia. Data acquisition across multiple sites permitted the integration and cross-validation of clinical, cognitive, morphometric, and functional neuroimaging results gathered from unique samples of schizophrenia patients and controls using a common protocol across sites. Particular effort was made to recruit patients early in the course of their illness, at the onset of their symptoms. There is a relatively even sampling of illness duration in chronic patients. This data repository will be useful to 1) scientists who can study schizophrenia by further analysis of this cohort and/or by pooling with other data; 2) computer scientists and software algorithm developers for testing and validating novel registration, segmentation, and other analysis software; and 3) educators in the fields of neuroimaging, medical image analysis and medical imaging informatics who need exemplar data sets for courses and workshops. Sharing provides the opportunity for independent replication of already published results from this data set and novel exploration. This manuscript describes the inclusion/exclusion criteria, imaging parameters and other information that will assist those wishing to use this data repository.

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Year:  2013        PMID: 23760817      PMCID: PMC3727653          DOI: 10.1007/s12021-013-9184-3

Source DB:  PubMed          Journal:  Neuroinformatics        ISSN: 1539-2791


  112 in total

1.  Cortical volume, surface area, and thickness in schizophrenia and bipolar disorder.

Authors:  Lars M Rimol; Ragnar Nesvåg; Don J Hagler; Orjan Bergmann; Christine Fennema-Notestine; Cecilie B Hartberg; Unn K Haukvik; Elisabeth Lange; Chris J Pung; Andres Server; Ingrid Melle; Ole A Andreassen; Ingrid Agartz; Anders M Dale
Journal:  Biol Psychiatry       Date:  2012-01-26       Impact factor: 13.382

Review 2.  Artifacts and pitfalls in diffusion MRI.

Authors:  Denis Le Bihan; Cyril Poupon; Alexis Amadon; Franck Lethimonnier
Journal:  J Magn Reson Imaging       Date:  2006-09       Impact factor: 4.813

3.  Sparse bayesian learning for identifying imaging biomarkers in AD prediction.

Authors:  Li Shen; Yuan Qi; Sungeun Kim; Kwangsik Nho; Jing Wan; Shannon L Risacher; Andrew J Saykin
Journal:  Med Image Comput Comput Assist Interv       Date:  2010

Review 4.  The effects of antipsychotics on the brain: what have we learnt from structural imaging of schizophrenia?--a systematic review.

Authors:  R Smieskova; P Fusar-Poli; P Allen; K Bendfeldt; R D Stieglitz; J Drewe; E W Radue; P K McGuire; A Riecher-Rössler; S J Borgwardt
Journal:  Curr Pharm Des       Date:  2009       Impact factor: 3.116

5.  Altered small-world brain networks in temporal lobe in patients with schizophrenia performing an auditory oddball task.

Authors:  Qingbao Yu; Jing Sui; Srinivas Rachakonda; Hao He; Godfrey Pearlson; Vince D Calhoun
Journal:  Front Syst Neurosci       Date:  2011-02-08

6.  A classification of hand preference by association analysis.

Authors:  M Annett
Journal:  Br J Psychol       Date:  1970-08

7.  Schizophrenic subjects activate dorsolateral prefrontal cortex during a working memory task, as measured by fMRI.

Authors:  D S Manoach; D Z Press; V Thangaraj; M M Searl; D C Goff; E Halpern; C B Saper; S Warach
Journal:  Biol Psychiatry       Date:  1999-05-01       Impact factor: 13.382

8.  Antipsychotic drug effects on motor activation measured by functional magnetic resonance imaging in schizophrenic patients.

Authors:  D F Braus; G Ende; W Weber-Fahr; A Sartorius; A Krier; P Hubrich-Ungureanu; M Ruf; S Stuck; F A Henn
Journal:  Schizophr Res       Date:  1999-08-23       Impact factor: 4.939

9.  Neuropsychological testing and structural magnetic resonance imaging as diagnostic biomarkers early in the course of schizophrenia and related psychoses.

Authors:  Elissaios Karageorgiou; S Charles Schulz; Randy L Gollub; Nancy C Andreasen; Beng-Choon Ho; John Lauriello; Vince D Calhoun; H Jeremy Bockholt; Scott R Sponheim; Apostolos P Georgopoulos
Journal:  Neuroinformatics       Date:  2011-12

10.  Temporal lobe and "default" hemodynamic brain modes discriminate between schizophrenia and bipolar disorder.

Authors:  Vince D Calhoun; Paul K Maciejewski; Godfrey D Pearlson; Kent A Kiehl
Journal:  Hum Brain Mapp       Date:  2008-11       Impact factor: 5.038

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  60 in total

1.  Relevant feature set estimation with a knock-out strategy and random forests.

Authors:  Melanie Ganz; Douglas N Greve; Bruce Fischl; Ender Konukoglu
Journal:  Neuroimage       Date:  2015-08-10       Impact factor: 6.556

2.  Clinical prediction from structural brain MRI scans: a large-scale empirical study.

Authors:  Mert R Sabuncu; Ender Konukoglu
Journal:  Neuroinformatics       Date:  2015-01

3.  MB-COMT promoter DNA methylation is associated with working-memory processing in schizophrenia patients and healthy controls.

Authors:  Esther Walton; Jingyu Liu; Johanna Hass; Tonya White; Markus Scholz; Veit Roessner; Randy Gollub; Vince D Calhoun; Stefan Ehrlich
Journal:  Epigenetics       Date:  2014-05-16       Impact factor: 4.528

4.  Morphometricity as a measure of the neuroanatomical signature of a trait.

Authors:  Mert R Sabuncu; Tian Ge; Avram J Holmes; Jordan W Smoller; Randy L Buckner; Bruce Fischl
Journal:  Proc Natl Acad Sci U S A       Date:  2016-09-09       Impact factor: 11.205

5.  The Canadian Biomarker Integration Network in Depression (CAN-BIND): magnetic resonance imaging protocols

Authors:  Glenda M. MacQueen; Stefanie Hassel; Stephen R. Arnott; Addington Jean; Christopher R. Bowie; Signe L. Bray; Andrew D. Davis; Jonathan Downar; Jane A. Foster; Benicio N. Frey; Benjamin I. Goldstein; Geoffrey B. Hall; Kate L. Harkness; Jacqueline Harris; Raymond W. Lam; Catherine Lebel; Roumen Milev; Daniel J. Müller; Sagar V. Parikh; Sakina Rizvi; Susan Rotzinger; Gulshan B. Sharma; Claudio N. Soares; Gustavo Turecki; Fidel Vila-Rodriguez; Joanna Yu; Mojdeh Zamyadi; Stephen C. Strother; Sidney H. Kennedy
Journal:  J Psychiatry Neurosci       Date:  2019-07-01       Impact factor: 6.186

6.  A Bayesian Approach for Estimating Dynamic Functional Network Connectivity in fMRI Data.

Authors:  Ryan Warnick; Michele Guindani; Erik Erhardt; Elena Allen; Vince Calhoun; Marina Vannucci
Journal:  J Am Stat Assoc       Date:  2018-05-16       Impact factor: 5.033

7.  Unsupervised Deep Learning for Bayesian Brain MRI Segmentation.

Authors:  Adrian V Dalca; Evan Yu; Polina Golland; Bruce Fischl; Mert R Sabuncu; Juan Eugenio Iglesias
Journal:  Med Image Comput Comput Assist Interv       Date:  2019-10-10

Review 8.  Psychoradiology: The Frontier of Neuroimaging in Psychiatry.

Authors:  Su Lui; Xiaohong Joe Zhou; John A Sweeney; Qiyong Gong
Journal:  Radiology       Date:  2016-11       Impact factor: 11.105

9.  Brain Imaging Genomics: Integrated Analysis and Machine Learning.

Authors:  Li Shen; Paul M Thompson
Journal:  Proc IEEE Inst Electr Electron Eng       Date:  2019-10-29       Impact factor: 10.961

10.  Biomarker Identification Through Integrating fMRI and Epigenetics.

Authors:  Yuntong Bai; Zille Pascal; Wenxing Hu; Vince D Calhoun; Yu-Ping Wang
Journal:  IEEE Trans Biomed Eng       Date:  2019-08-02       Impact factor: 4.538

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