Literature DB >> 31624207

An oxyl/oxo mechanism for oxygen-oxygen coupling in PSII revealed by an x-ray free-electron laser.

Michihiro Suga1,2, Fusamichi Akita3,2, Keitaro Yamashita4, Yoshiki Nakajima3, Go Ueno4, Hongjie Li3,5, Takahiro Yamane3, Kunio Hirata4, Yasufumi Umena3, Shinichiro Yonekura3, Long-Jiang Yu3, Hironori Murakami6, Takashi Nomura4,5, Tetsunari Kimura7, Minoru Kubo4,5, Seiki Baba6, Takashi Kumasaka6, Kensuke Tono4,6, Makina Yabashi4,6, Hiroshi Isobe3, Kizashi Yamaguchi8,9, Masaki Yamamoto4, Hideo Ago10, Jian-Ren Shen1.   

Abstract

Photosynthetic water oxidation is catalyzed by the Mn4CaO5 cluster of photosystem II (PSII) with linear progression through five S-state intermediates (S0 to S4). To reveal the mechanism of water oxidation, we analyzed structures of PSII in the S1, S2, and S3 states by x-ray free-electron laser serial crystallography. No insertion of water was found in S2, but flipping of D1 Glu189 upon transition to S3 leads to the opening of a water channel and provides a space for incorporation of an additional oxygen ligand, resulting in an open cubane Mn4CaO6 cluster with an oxyl/oxo bridge. Structural changes of PSII between the different S states reveal cooperative action of substrate water access, proton release, and dioxygen formation in photosynthetic water oxidation.
Copyright © 2019 The Authors, some rights reserved; exclusive licensee American Association for the Advancement of Science. No claim to original U.S. Government Works.

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Year:  2019        PMID: 31624207     DOI: 10.1126/science.aax6998

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  35 in total

1.  Dynamic Structural Biology Experiments at XFEL or Synchrotron Sources.

Authors:  Pierre Aller; Allen M Orville
Journal:  Methods Mol Biol       Date:  2021

2.  Untangling the sequence of events during the S2 → S3 transition in photosystem II and implications for the water oxidation mechanism.

Authors:  Mohamed Ibrahim; Thomas Fransson; Ruchira Chatterjee; Mun Hon Cheah; Rana Hussein; Louise Lassalle; Kyle D Sutherlin; Iris D Young; Franklin D Fuller; Sheraz Gul; In-Sik Kim; Philipp S Simon; Casper de Lichtenberg; Petko Chernev; Isabel Bogacz; Cindy C Pham; Allen M Orville; Nicholas Saichek; Trent Northen; Alexander Batyuk; Sergio Carbajo; Roberto Alonso-Mori; Kensuke Tono; Shigeki Owada; Asmit Bhowmick; Robert Bolotovsky; Derek Mendez; Nigel W Moriarty; James M Holton; Holger Dobbek; Aaron S Brewster; Paul D Adams; Nicholas K Sauter; Uwe Bergmann; Athina Zouni; Johannes Messinger; Jan Kern; Vittal K Yachandra; Junko Yano
Journal:  Proc Natl Acad Sci U S A       Date:  2020-05-20       Impact factor: 11.205

3.  Elucidating the role of adsorption during artificial photosynthesis: H2O and CO2 adsorption isotherms over TiO2 reveal thermal effects under UV illumination.

Authors:  Deniz Uner; Begum Yilmaz
Journal:  Photosynth Res       Date:  2022-06-10       Impact factor: 3.573

4.  Pulsed Multifrequency Electron Paramagnetic Resonance Spectroscopy Reveals Key Branch Points for One- vs Two-Electron Reactivity in Mn/Fe Proteins.

Authors:  Effie C Kisgeropoulos; Yunqiao J Gan; Samuel M Greer; Joseph M Hazel; Hannah S Shafaat
Journal:  J Am Chem Soc       Date:  2022-07-05       Impact factor: 16.383

5.  Predicting the oxidation states of Mn ions in the oxygen-evolving complex of photosystem II using supervised and unsupervised machine learning.

Authors:  Muhamed Amin
Journal:  Photosynth Res       Date:  2022-07-27       Impact factor: 3.429

6.  A theoretical framework of the hybrid mechanism of photosystem II photodamage.

Authors:  Alonso Zavafer
Journal:  Photosynth Res       Date:  2021-08-02       Impact factor: 3.573

7.  Do crystallographic XFEL data support binding of a water molecule to the oxygen-evolving complex of photosystem II exposed to two flashes of light?

Authors:  Jimin Wang; William H Armstrong; Victor S Batista
Journal:  Proc Natl Acad Sci U S A       Date:  2021-06-15       Impact factor: 11.205

8.  Reply to Wang et al.: Clear evidence of binding of Ox to the oxygen-evolving complex of photosystem II is best observed in the omit map.

Authors:  Mohamed Ibrahim; Nigel W Moriarty; Jan Kern; James M Holton; Aaron S Brewster; Asmit Bhowmick; Uwe Bergmann; Athina Zouni; Johannes Messinger; Vittal K Yachandra; Junko Yano; Holger Dobbek; Nicholas K Sauter; Paul D Adams
Journal:  Proc Natl Acad Sci U S A       Date:  2021-06-15       Impact factor: 11.205

9.  Structural insights into photosystem II assembly.

Authors:  Jure Zabret; Stefan Bohn; Sandra K Schuller; Oliver Arnolds; Madeline Möller; Jakob Meier-Credo; Pasqual Liauw; Aaron Chan; Emad Tajkhorshid; Julian D Langer; Raphael Stoll; Anja Krieger-Liszkay; Benjamin D Engel; Till Rudack; Jan M Schuller; Marc M Nowaczyk
Journal:  Nat Plants       Date:  2021-04-12       Impact factor: 15.793

10.  Short-lived intermediate in N2O generation by P450 NO reductase captured by time-resolved IR spectroscopy and XFEL crystallography.

Authors:  Takashi Nomura; Tetsunari Kimura; Yusuke Kanematsu; Daichi Yamada; Keitaro Yamashita; Kunio Hirata; Go Ueno; Hironori Murakami; Tamao Hisano; Raika Yamagiwa; Hanae Takeda; Chai Gopalasingam; Ryota Kousaka; Sachiko Yanagisawa; Osami Shoji; Takashi Kumasaka; Masaki Yamamoto; Yu Takano; Hiroshi Sugimoto; Takehiko Tosha; Minoru Kubo; Yoshitsugu Shiro
Journal:  Proc Natl Acad Sci U S A       Date:  2021-05-25       Impact factor: 11.205

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