Literature DB >> 31600508

Computational Neuroethology: A Call to Action.

Sandeep Robert Datta1, David J Anderson2, Kristin Branson3, Pietro Perona4, Andrew Leifer5.   

Abstract

The brain is worthy of study because it is in charge of behavior. A flurry of recent technical advances in measuring and quantifying naturalistic behaviors provide an important opportunity for advancing brain science. However, the problem of understanding unrestrained behavior in the context of neural recordings and manipulations remains unsolved, and developing approaches to addressing this challenge is critical. Here we discuss considerations in computational neuroethology-the science of quantifying naturalistic behaviors for understanding the brain-and propose strategies to evaluate progress. We point to open questions that require resolution and call upon the broader systems neuroscience community to further develop and leverage measures of naturalistic, unrestrained behavior, which will enable us to more effectively probe the richness and complexity of the brain.
Copyright © 2019 Elsevier Inc. All rights reserved.

Entities:  

Year:  2019        PMID: 31600508      PMCID: PMC6981239          DOI: 10.1016/j.neuron.2019.09.038

Source DB:  PubMed          Journal:  Neuron        ISSN: 0896-6273            Impact factor:   17.173


  112 in total

1.  Mapping Sub-Second Structure in Mouse Behavior.

Authors:  Alexander B Wiltschko; Matthew J Johnson; Giuliano Iurilli; Ralph E Peterson; Jesse M Katon; Stan L Pashkovski; Victoria E Abraira; Ryan P Adams; Sandeep Robert Datta
Journal:  Neuron       Date:  2015-12-16       Impact factor: 17.173

2.  Dynamic sensory cues shape song structure in Drosophila.

Authors:  Philip Coen; Jan Clemens; Andrew J Weinstein; Diego A Pacheco; Yi Deng; Mala Murthy
Journal:  Nature       Date:  2014-03-05       Impact factor: 49.962

3.  Automated measurement of mouse social behaviors using depth sensing, video tracking, and machine learning.

Authors:  Weizhe Hong; Ann Kennedy; Xavier P Burgos-Artizzu; Moriel Zelikowsky; Santiago G Navonne; Pietro Perona; David J Anderson
Journal:  Proc Natl Acad Sci U S A       Date:  2015-09-09       Impact factor: 11.205

4.  Dynamic structure of locomotor behavior in walking fruit flies.

Authors:  Alexander Y Katsov; Limor Freifeld; Mark Horowitz; Seppe Kuehn; Thomas R Clandinin
Journal:  Elife       Date:  2017-07-25       Impact factor: 8.140

Review 5.  The Mauthner-cell circuit of fish as a model system for startle plasticity.

Authors:  Violeta Medan; Thomas Preuss
Journal:  J Physiol Paris       Date:  2014-08-07

6.  The touchscreen operant platform for assessing executive function in rats and mice.

Authors:  Adam C Mar; Alexa E Horner; Simon R O Nilsson; Johan Alsiö; Brianne A Kent; Chi Hun Kim; Andrew Holmes; Lisa M Saksida; Timothy J Bussey
Journal:  Nat Protoc       Date:  2013-09-19       Impact factor: 13.491

7.  Computations underlying Drosophila photo-taxis, odor-taxis, and multi-sensory integration.

Authors:  Ruben Gepner; Mirna Mihovilovic Skanata; Natalie M Bernat; Margarita Kaplow; Marc Gershow
Journal:  Elife       Date:  2015-05-06       Impact factor: 8.140

8.  Drosophila melanogaster grooming possesses syntax with distinct rules at different temporal scales.

Authors:  Joshua M Mueller; Primoz Ravbar; Julie H Simpson; Jean M Carlson
Journal:  PLoS Comput Biol       Date:  2019-06-26       Impact factor: 4.475

9.  A GAL4-driver line resource for Drosophila neurobiology.

Authors:  Arnim Jenett; Gerald M Rubin; Teri-T B Ngo; David Shepherd; Christine Murphy; Heather Dionne; Barret D Pfeiffer; Amanda Cavallaro; Donald Hall; Jennifer Jeter; Nirmala Iyer; Dona Fetter; Joanna H Hausenfluck; Hanchuan Peng; Eric T Trautman; Robert R Svirskas; Eugene W Myers; Zbigniew R Iwinski; Yoshinori Aso; Gina M DePasquale; Adrianne Enos; Phuson Hulamm; Shing Chun Benny Lam; Hsing-Hsi Li; Todd R Laverty; Fuhui Long; Lei Qu; Sean D Murphy; Konrad Rokicki; Todd Safford; Kshiti Shaw; Julie H Simpson; Allison Sowell; Susana Tae; Yang Yu; Christopher T Zugates
Journal:  Cell Rep       Date:  2012-10-11       Impact factor: 9.423

10.  Dimensionality and dynamics in the behavior of C. elegans.

Authors:  Greg J Stephens; Bethany Johnson-Kerner; William Bialek; William S Ryu
Journal:  PLoS Comput Biol       Date:  2008-04-25       Impact factor: 4.475

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  75 in total

1.  Systems Neuroscience of Natural Behaviors in Rodents.

Authors:  Emily Jane Dennis; Ahmed El Hady; Angie Michaiel; Ann Clemens; Dougal R Gowan Tervo; Jakob Voigts; Sandeep Robert Datta
Journal:  J Neurosci       Date:  2020-12-18       Impact factor: 6.167

2.  Sniff-synchronized, gradient-guided olfactory search by freely moving mice.

Authors:  Teresa M Findley; David G Wyrick; Jennifer L Cramer; Morgan A Brown; Blake Holcomb; Robin Attey; Dorian Yeh; Eric Monasevitch; Nelly Nouboussi; Isabelle Cullen; Jeremea O Songco; Jared F King; Yashar Ahmadian; Matthew C Smear
Journal:  Elife       Date:  2021-05-04       Impact factor: 8.140

Review 3.  Rage Against the Machine: Advancing the study of aggression ethology via machine learning.

Authors:  Nastacia L Goodwin; Simon R O Nilsson; Sam A Golden
Journal:  Psychopharmacology (Berl)       Date:  2020-07-09       Impact factor: 4.530

4.  High-resolution Fourier light-field microscopy for volumetric multi-color live-cell imaging.

Authors:  Xuanwen Hua; Wenhao Liu; Shu Jia
Journal:  Optica       Date:  2021-04-29       Impact factor: 11.104

5.  Context-dependent modulation of natural approach behaviour in mice.

Authors:  Nicole M Procacci; Kelsey M Allen; Gael E Robb; Rebecca Ijekah; Hudson Lynam; Jennifer L Hoy
Journal:  Proc Biol Sci       Date:  2020-09-02       Impact factor: 5.349

6.  Real-time, low-latency closed-loop feedback using markerless posture tracking.

Authors:  Gary A Kane; Gonçalo Lopes; Jonny L Saunders; Alexander Mathis; Mackenzie W Mathis
Journal:  Elife       Date:  2020-12-08       Impact factor: 8.140

Review 7.  Movement-Related Signals in Sensory Areas: Roles in Natural Behavior.

Authors:  Philip R L Parker; Morgan A Brown; Matthew C Smear; Cristopher M Niell
Journal:  Trends Neurosci       Date:  2020-06-22       Impact factor: 13.837

8.  anTraX, a software package for high-throughput video tracking of color-tagged insects.

Authors:  Asaf Gal; Jonathan Saragosti; Daniel Jc Kronauer
Journal:  Elife       Date:  2020-11-19       Impact factor: 8.140

Review 9.  Using Language Processing and Speech Analysis for the Identification of Psychosis and Other Disorders.

Authors:  Cheryl Mary Corcoran; Guillermo A Cecchi
Journal:  Biol Psychiatry Cogn Neurosci Neuroimaging       Date:  2020-06-14

10.  Oxytocin, vasopressin and social behavior in the age of genome editing: A comparative perspective.

Authors:  Arjen J Boender; Larry J Young
Journal:  Horm Behav       Date:  2020-06-18       Impact factor: 3.587

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