Literature DB >> 32647898

Rage Against the Machine: Advancing the study of aggression ethology via machine learning.

Nastacia L Goodwin1,2, Simon R O Nilsson1, Sam A Golden3,4,5.   

Abstract

RATIONALE: Aggression, comorbid with neuropsychiatric disorders, exhibits with diverse clinical presentations and places a significant burden on patients, caregivers, and society. This diversity is observed because aggression is a complex behavior that can be ethologically demarcated as either appetitive (rewarding) or reactive (defensive), each with its own behavioral characteristics, functionality, and neural basis that may transition from adaptive to maladaptive depending on genetic and environmental factors. There has been a recent surge in the development of preclinical animal models for studying appetitive aggression-related behaviors and identifying the neural mechanisms guiding their progression and expression. However, adoption of these procedures is often impeded by the arduous task of manually scoring complex social interactions. Manual observations are generally susceptible to observer drift, long analysis times, and poor inter-rater reliability, and are further incompatible with the sampling frequencies required of modern neuroscience methods.
OBJECTIVES: In this review, we discuss recent advances in the preclinical study of appetitive aggression in mice, paired with our perspective on the potential for machine learning techniques in producing automated, robust scoring of aggressive social behavior. We discuss critical considerations for implementing valid computer classifications within behavioral pharmacological studies. KEY
RESULTS: Open-source automated classification platforms can match or exceed the performance of human observers while removing the confounds of observer drift, bias, and inter-rater reliability. Furthermore, unsupervised approaches can identify previously uncharacterized aggression-related behavioral repertoires in model species. DISCUSSION AND
CONCLUSIONS: Advances in open-source computational approaches hold promise for overcoming current manual annotation caveats while also introducing and generalizing computational neuroethology to the greater behavioral neuroscience community. We propose that currently available open-source approaches are sufficient for overcoming the main limitations preventing wide adoption of machine learning within the context of preclinical aggression behavioral research.

Entities:  

Keywords:  Aggression; Machine learning; Mice; Motivation; Reward

Mesh:

Year:  2020        PMID: 32647898      PMCID: PMC7502501          DOI: 10.1007/s00213-020-05577-x

Source DB:  PubMed          Journal:  Psychopharmacology (Berl)        ISSN: 0033-3158            Impact factor:   4.530


  126 in total

1.  Mapping Sub-Second Structure in Mouse Behavior.

Authors:  Alexander B Wiltschko; Matthew J Johnson; Giuliano Iurilli; Ralph E Peterson; Jesse M Katon; Stan L Pashkovski; Victoria E Abraira; Ryan P Adams; Sandeep Robert Datta
Journal:  Neuron       Date:  2015-12-16       Impact factor: 17.173

2.  Species differences in the winner effect disappear in response to post-victory testosterone manipulations.

Authors:  Matthew J Fuxjager; Jon L Montgomery; Catherine A Marler
Journal:  Proc Biol Sci       Date:  2011-04-13       Impact factor: 5.349

3.  Escalated Aggression in Animal Models: Shedding New Light on Mesocorticolimbic Circuits.

Authors:  Klaus A Miczek; Aki Takahashi; Kyle L Gobrogge; Lara S Hwa; Rosa M M de Almeida
Journal:  Curr Opin Behav Sci       Date:  2015-06-01

4.  Deep Learning: Current and Emerging Applications in Medicine and Technology.

Authors:  Altug Akay; Henry Hess
Journal:  IEEE J Biomed Health Inform       Date:  2019-01-23       Impact factor: 5.772

5.  Persistent conditioned place preference to aggression experience in adult male sexually-experienced CD-1 mice.

Authors:  S A Golden; H Aleyasin; R Heins; M Flanigan; M Heshmati; A Takahashi; S J Russo; Y Shaham
Journal:  Genes Brain Behav       Date:  2016-08-18       Impact factor: 3.449

6.  Intruder-evoked aggression in isolated and nonisolated mice: effects of psychomotor stimulants and L-dopa.

Authors:  K A Miczek; J M O'Donnell
Journal:  Psychopharmacology (Berl)       Date:  1978-04-14       Impact factor: 4.530

7.  Aggressive behavior as a reinforcer in mice: activation by allopregnanolone.

Authors:  Eric W Fish; Joseph F De Bold; Klaus A Miczek
Journal:  Psychopharmacology (Berl)       Date:  2002-08-27       Impact factor: 4.530

8.  Automated behavioural analysis reveals the basic behavioural repertoire of the urochordate Ciona intestinalis.

Authors:  Jerneja Rudolf; Daniel Dondorp; Louise Canon; Sonia Tieo; Marios Chatzigeorgiou
Journal:  Sci Rep       Date:  2019-02-20       Impact factor: 4.379

9.  DeepPoseKit, a software toolkit for fast and robust animal pose estimation using deep learning.

Authors:  Jacob M Graving; Daniel Chae; Hemal Naik; Liang Li; Benjamin Koger; Blair R Costelloe; Iain D Couzin
Journal:  Elife       Date:  2019-10-01       Impact factor: 8.140

10.  DeepFly3D, a deep learning-based approach for 3D limb and appendage tracking in tethered, adult Drosophila.

Authors:  Pavan Ramdya; Pascal Fua; Semih Günel; Helge Rhodin; Daniel Morales; João Campagnolo
Journal:  Elife       Date:  2019-10-04       Impact factor: 8.140

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  6 in total

Review 1.  Neural circuits regulating prosocial behaviors.

Authors:  Jessica J Walsh; Daniel J Christoffel; Robert C Malenka
Journal:  Neuropsychopharmacology       Date:  2022-06-14       Impact factor: 7.853

Review 2.  Neural circuit mechanisms that govern inter-male attack in mice.

Authors:  Xi Zha; Xiao-Hong Xu
Journal:  Cell Mol Life Sci       Date:  2021-10-23       Impact factor: 9.261

3.  To fight or not to fight: activation of the mPFC during decision to engage in aggressive behavior after ethanol consumption in a novel murine model.

Authors:  Klaus A Miczek; Naz Akdilek; Vania M M Ferreira; Michael Z Leonard; Lillian R Marinelli; Herbert E Covington
Journal:  Psychopharmacology (Berl)       Date:  2022-08-11       Impact factor: 4.415

4.  Waving Through the Window: A Model of Volitional Social Interaction in Female Mice.

Authors:  Leslie A Ramsey; Fernanda M Holloman; Bruce T Hope; Yavin Shaham; Marco Venniro
Journal:  Biol Psychiatry       Date:  2021-11-09       Impact factor: 12.810

Review 5.  Toward the explainability, transparency, and universality of machine learning for behavioral classification in neuroscience.

Authors:  Nastacia L Goodwin; Simon R O Nilsson; Jia Jie Choong; Sam A Golden
Journal:  Curr Opin Neurobiol       Date:  2022-04-26       Impact factor: 7.070

6.  Automated procedure to assess pup retrieval in laboratory mice.

Authors:  Carmen Winters; Wim Gorssen; Victoria A Ossorio-Salazar; Simon Nilsson; Sam Golden; Rudi D'Hooge
Journal:  Sci Rep       Date:  2022-01-31       Impact factor: 4.379

  6 in total

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