Literature DB >> 31591576

An order of magnitude faster DNA-PAINT imaging by optimized sequence design and buffer conditions.

Florian Schueder1,2, Johannes Stein2, Florian Stehr2, Alexander Auer1,2, Bianca Sperl2, Maximilian T Strauss1,2, Petra Schwille2, Ralf Jungmann3,4.   

Abstract

DNA points accumulation in nanoscale topography (DNA-PAINT) is a relatively easy-to-implement super-resolution technique. However, image acquisition is slow compared to most other approaches. Here, we overcome this limitation by designing optimized DNA sequences and buffer conditions. We demonstrate our approach in vitro with DNA origami and in situ using cell samples, and achieve an order of magnitude faster imaging speeds without compromising image quality or spatial resolution. This improvement now makes DNA-PAINT applicable to high-throughput studies.

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Year:  2019        PMID: 31591576     DOI: 10.1038/s41592-019-0584-7

Source DB:  PubMed          Journal:  Nat Methods        ISSN: 1548-7091            Impact factor:   28.547


  33 in total

1.  Tunable DNA Origami Motors Translocate Ballistically Over μm Distances at nm/s Speeds.

Authors:  Alisina Bazrafshan; Travis A Meyer; Hanquan Su; Joshua M Brockman; Aaron T Blanchard; Selma Piranej; Yuxin Duan; Yonggang Ke; Khalid Salaita
Journal:  Angew Chem Int Ed Engl       Date:  2020-04-01       Impact factor: 15.336

2.  The stability and number of nucleating interactions determine DNA hybridization rates in the absence of secondary structure.

Authors:  Sophie Hertel; Richard E Spinney; Stephanie Y Xu; Thomas E Ouldridge; Richard G Morris; Lawrence K Lee
Journal:  Nucleic Acids Res       Date:  2022-08-12       Impact factor: 19.160

3.  MiOS, an integrated imaging and computational strategy to model gene folding with nucleosome resolution.

Authors:  Maria Victoria Neguembor; Juan Pablo Arcon; Diana Buitrago; Rafael Lema; Jürgen Walther; Ximena Garate; Laura Martin; Pablo Romero; Jumana AlHaj Abed; Marta Gut; Julie Blanc; Melike Lakadamyali; Chao-Ting Wu; Isabelle Brun Heath; Modesto Orozco; Pablo D Dans; Maria Pia Cosma
Journal:  Nat Struct Mol Biol       Date:  2022-10-11       Impact factor: 18.361

4.  Live-cell super-resolved PAINT imaging of piconewton cellular traction forces.

Authors:  Joshua M Brockman; Hanquan Su; Aaron T Blanchard; Yuxin Duan; Travis Meyer; M Edward Quach; Roxanne Glazier; Alisina Bazrafshan; Rachel L Bender; Anna V Kellner; Hiroaki Ogasawara; Rong Ma; Florian Schueder; Brian G Petrich; Ralf Jungmann; Renhao Li; Alexa L Mattheyses; Yonggang Ke; Khalid Salaita
Journal:  Nat Methods       Date:  2020-09-14       Impact factor: 28.547

Review 5.  Completing the canvas: advances and challenges for DNA-PAINT super-resolution imaging.

Authors:  Raman van Wee; Mike Filius; Chirlmin Joo
Journal:  Trends Biochem Sci       Date:  2021-07-08       Impact factor: 13.807

6.  Parameter-free rendering of single-molecule localization microscopy data for parameter-free resolution estimation.

Authors:  Adrien C Descloux; Kristin S Grußmayer; Aleksandra Radenovic
Journal:  Commun Biol       Date:  2021-05-11

Review 7.  Technological advances in super-resolution microscopy to study cellular processes.

Authors:  Charles Bond; Adriana N Santiago-Ruiz; Qing Tang; Melike Lakadamyali
Journal:  Mol Cell       Date:  2022-01-20       Impact factor: 17.970

Review 8.  Fluorescence nanoscopy at the sub-10 nm scale.

Authors:  Luciano A Masullo; Alan M Szalai; Lucía F Lopez; Fernando D Stefani
Journal:  Biophys Rev       Date:  2021-12-02

9.  Tracking single particles for hours via continuous DNA-mediated fluorophore exchange.

Authors:  Florian Stehr; Johannes Stein; Julian Bauer; Christian Niederauer; Ralf Jungmann; Kristina Ganzinger; Petra Schwille
Journal:  Nat Commun       Date:  2021-07-21       Impact factor: 14.919

10.  Visualizing Synaptic Multi-Protein Patterns of Neuronal Tissue With DNA-Assisted Single-Molecule Localization Microscopy.

Authors:  Kaarjel K Narayanasamy; Aleksandar Stojic; Yunqing Li; Steffen Sass; Marina R Hesse; Nina S Deussner-Helfmann; Marina S Dietz; Thomas Kuner; Maja Klevanski; Mike Heilemann
Journal:  Front Synaptic Neurosci       Date:  2021-06-17
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